Tan0019237 (gene) Snake gourd v1

Overview
NameTan0019237
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionconserved peptide upstream open reading frame 14
LocationLG01: 1822694 .. 1822852 (+)
RNA-Seq ExpressionTan0019237
SyntenyTan0019237
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAATGGAAAGGTTGTGGAAAACTAGGACGACTGGTGCGAAGAGGTGGTTCTATGACTTCTTACAAATACGCTCTTCTGTTGTCACCTGTTGTCTCTTTCTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGGTGTAG

mRNA sequence

ATGGGAAAATGGAAAGGTTGTGGAAAACTAGGACGACTGGTGCGAAGAGGTGGTTCTATGACTTCTTACAAATACGCTCTTCTGTTGTCACCTGTTGTCTCTTTCTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGGTGTAG

Coding sequence (CDS)

ATGGGAAAATGGAAAGGTTGTGGAAAACTAGGACGACTGGTGCGAAGAGGTGGTTCTATGACTTCTTACAAATACGCTCTTCTGTTGTCACCTGTTGTCTCTTTCTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGGTGTAG

Protein sequence

MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV
Homology
[Close]
BLAST of Tan0019237 vs. NCBI nr
Match: KAG7013257.1 (hypothetical protein SDJN02_26015, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          MGKWKGCGKLGRLV RGGSMTSYKY+LLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 40 MGKWKGCGKLGRLVPRGGSMTSYKYSLLLSPVVSVWDCIVRKMRYSYRPEWV 91

[Close]
BLAST of Tan0019237 vs. NCBI nr
Match: KAA0033697.1 (uncharacterized protein E6C27_scaffold239G001680 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 5.2e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1   MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
           M KWKG GKLGRLV RGGSMTSYKYALLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 50  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 101

[Close]
BLAST of Tan0019237 vs. NCBI nr
Match: XP_008439287.1 (PREDICTED: uncharacterized protein LOC103484116 [Cucumis melo] >XP_016899083.1 PREDICTED: uncharacterized protein LOC103484116 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 5.2e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          M KWKG GKLGRLV RGGSMTSYKYALLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 4  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 55

[Close]
BLAST of Tan0019237 vs. NCBI nr
Match: XP_016650179.1 (PREDICTED: uncharacterized protein LOC103333726 isoform X2 [Prunus mume] >XP_016650180.1 PREDICTED: uncharacterized protein LOC103333726 isoform X2 [Prunus mume])

HSP 1 Score: 94.7 bits (234), Expect = 2.4e-16
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR++ RGGS+++Y+++LLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 10 MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 61

[Close]
BLAST of Tan0019237 vs. NCBI nr
Match: KAB2598673.1 (hypothetical protein D8674_001593 [Pyrus ussuriensis x Pyrus communis] >ONI25398.1 hypothetical protein PRUPE_2G300500 [Prunus persica])

HSP 1 Score: 94.7 bits (234), Expect = 2.4e-16
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR++ RGGS+++Y+++LLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 1  MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 52

[Close]
BLAST of Tan0019237 vs. ExPASy TrEMBL
Match: A0A1S3AY20 (uncharacterized protein LOC103484116 OS=Cucumis melo OX=3656 GN=LOC103484116 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          M KWKG GKLGRLV RGGSMTSYKYALLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 4  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 55

[Close]
BLAST of Tan0019237 vs. ExPASy TrEMBL
Match: A0A5A7SWR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001680 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1   MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
           M KWKG GKLGRLV RGGSMTSYKYALLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 50  MDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWV 101

[Close]
BLAST of Tan0019237 vs. ExPASy TrEMBL
Match: A0A6J5WRR2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17860 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR++ RGGS+++Y+++LLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 44 MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 95

[Close]
BLAST of Tan0019237 vs. ExPASy TrEMBL
Match: A0A498KSB3 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_042840 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR++ RGGS+++Y+++LLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 4  MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 55

[Close]
BLAST of Tan0019237 vs. ExPASy TrEMBL
Match: A0A251QNM1 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G300500 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          MGK KGCGKLGR++ RGGS+++Y+++LLLSPVVS WDCIVRKMRYSYRPEWV
Sbjct: 1  MGKCKGCGKLGRMMPRGGSVSAYQFSLLLSPVVSVWDCIVRKMRYSYRPEWV 52

[Close]
BLAST of Tan0019237 vs. TAIR 10
Match: AT5G52552.1 (conserved peptide upstream open reading frame 14 )

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-15
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          MG+ KGC KLGR++ +  S  SY  +LLLSPVVS WDCIVRKMRY+Y PEWV
Sbjct: 1  MGEVKGCWKLGRMLSKDNSANSYNVSLLLSPVVSVWDCIVRKMRYTYIPEWV 52

[Close]
BLAST of Tan0019237 vs. TAIR 10
Match: AT4G25672.1 (conserved peptide upstream open reading frame 12 )

HSP 1 Score: 77.4 bits (189), Expect = 3.7e-15
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          MG+ KGCG +GR++ +  S  SY  +L LSPVVSFWDCIVR MRYSY PEWV
Sbjct: 1  MGESKGCGNVGRMISKNKSANSYNLSLQLSPVVSFWDCIVRTMRYSYIPEWV 52

[Close]
BLAST of Tan0019237 vs. TAIR 10
Match: AT4G25692.1 (conserved peptide upstream open reading frame 13 )

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-09
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1  MGKWKGCGKLGRLVRRGGSMTSYKYALLLSPVVSFWDCIVRKMRYSYRPEWV 53
          MG+  GCGK G ++    S  SY  +L LS V S WDC VR MRYSY PEW+
Sbjct: 4  MGESTGCGKGGLMIPNHKSANSYNLSLELSLVDSVWDCNVRTMRYSYIPEWL 55

The following BLAST results are available for this feature:
BLAST of Tan0019237 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0019237 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013257.11.2e-2094.23hypothetical protein SDJN02_26015, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0033697.15.2e-1992.31uncharacterized protein E6C27_scaffold239G001680 [Cucumis melo var. makuwa][more]
XP_008439287.15.2e-1992.31PREDICTED: uncharacterized protein LOC103484116 [Cucumis melo] >XP_016899083.1 P... [more]
XP_016650179.12.4e-1678.85PREDICTED: uncharacterized protein LOC103333726 isoform X2 [Prunus mume] >XP_016... [more]
KAB2598673.12.4e-1678.85hypothetical protein D8674_001593 [Pyrus ussuriensis x Pyrus communis] >ONI25398... [more]
BLAST of Tan0019237 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AY202.5e-1992.31uncharacterized protein LOC103484116 OS=Cucumis melo OX=3656 GN=LOC103484116 PE=... [more]
A0A5A7SWR12.5e-1992.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J5WRR21.2e-1678.85Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17860 PE=4 S... [more]
A0A498KSB31.2e-1678.85Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_042840 PE=4 SV=1[more]
A0A251QNM11.2e-1678.85Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G300500 PE=4 SV=1[more]
BLAST of Tan0019237 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G52552.12.9e-1567.31conserved peptide upstream open reading frame 14 [more]
AT4G25672.13.7e-1565.38conserved peptide upstream open reading frame 12 [more]
AT4G25692.15.2e-0953.85conserved peptide upstream open reading frame 13 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019237.1Tan0019237.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane