Tan0019216 (gene) Snake gourd v1

Overview
NameTan0019216
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPentatricopeptide repeat-containing protein
LocationLG09: 62381933 .. 62383813 (-)
RNA-Seq ExpressionTan0019216
SyntenyTan0019216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTAAATCAACCTATTTTTTTCTAAACTTCACAACTTATAAATTTTCCAATCTGTTACTTTATATTCAAATTTACACATTCCTACACCAATTTTAACAAAATCCACCCTGATTTTTTTTTTTTAAAACTCTCTTTATCAAAAGCATAACAGAAAAAACCTGTTTTCTCGTTCCTGTTTTCTTGTTCCTTAACATACTAATGGAGTCCACTCTCTAATGGAGGCTCTGAAATGCGCTGGTCCATTTCCCTCATCTGTAAATCGTCTCCTTCCTTCATCAAACCCACCATTTTCACAACTCCCCTCGCATTTACTTCCCTTCTAAGCAACTGCCGCGACCCTTGTCACATTTATCAAATCCATGGCTTCATGTTGCACAGAGCTCTCGATCAAGACAATCTCTTCCTCAGCAGATTCATCGACGCTTGTTCTTCTCTCGGCCTCTCTTTATACGCCTTTTCCGTCTTCTCAAACAAAACCCACCCGGATCTTCGTCTCTACAACACCGCAATTAAAGCCCTCTGTCAGACATCCTCTCCTGTTGACGCCATTTCGCTTTACACCAGGATTCGAATTGAGGGTTGCGGCCGGATTCCTACTCTATTCCCTTTGTTTTGAAGGTCGTCGTTCAGTTATCCGCCGTTGAAGTGGGGCGACAGATTCATACCCAGACGGTTCCTTCGGCTTTGGATACGGATGTGAATGTTGTCACTTCGTTGATTCAAATGTATTCTTCTTGTGGGTGTGTTTCTGATGCTCGTAAGCTGTTTGATTTTGTTGCTTTTAGGGATGTGGCTTTGTGGAATGCCATGGTTGCTGGGTATGTTAAAGTTGCTGAGAACTTAATAGTGCGCGTAAGGTGTTCGACACGAAATGCCTCAAAGGAATGTGATCTCTGGATCGCTTTGATTCTTTGGGTATGCACGGACCAATAGCCACGATGAAGCGATTGCATTTGCTCGTGAAGATGCACTTGAAGAAGTGGAGCTGATGAAATTGCAATGTTGGTTGTGCTCTCTCTGCGCTTCTTTCCTGGGGCTCTTGAGCTTGGGAGTGGATCCATAACTATATTGAAAAGCATGGTTTGTGCAGGATTGTTCCATTGTACAATGCCCTTATAGATATGTATGCAAAATCAGGCAACATAAGAAGAGCACTGGAAGTTTTTGAGAACATGAAGCATAAAAGTGTCATAACTTGGTCCACCATGGTTGCTGCCTTGGCTCTTCACGGGCTTGGAGGAGAAGCCATTGACACGTTCCTTCGAATGGAGAAGGCAAGAGTTAGGCCAAATGAAGTAACTTTCATAGCAATCCTATCTGCTTGCAGTCATGTTGGAATGGTGGATGTGGGTCGTTATTATTTTGATCGAATGCAATCAATGTACAAAATTGAGCCAAAAATTGAGCATTATGGCTGCATGATTGATCTGCTGGCTCGTGCTGGTTATCTTCAAGAGGCACAAAAACTGATTCAGGACATGCCATTTGAAGCAAATGCAGCGATATGAGGGTCTCTTCTTGCTGCTTCCAATATTTATAGGGATGCTGAGCTTGCAGAGCAGGCTTTGAGGCATCTTGCAAAGCTGGAGCCTGAAAATAGTGGGAATTATACACTCTTATCCAACACATATGCTGCTCTTGGCAGGTGGAATGAATCTGGGATGGTGAGGAAGGTGATGAGAAATGCGGGTGTGAAGAAGGCTCCGGGTGGAAGCTTTATTGAAATTAATAACAGAGTATATGAATTTCTTGCTGGAGATAAGTCAGGTTCTCAGTTACAAGGGATCTATCAAGTCTTGTGCAAGATAATTGTGCAGTTGAAAATGGTCGGATTGTTACAGGAGGAATGGAGTAAGTTTCTTGACTACGATGAGTGA

mRNA sequence

ATGTTGGATGCTGAGCTTGCAGAGCAGGCTTTGAGGCATCTTGCAAAGCTGGAGCCTGAAAATAGTGGGAATTATACACTCTTATCCAACACATATGCTGCTCTTGGCAGGTGGAATGAATCTGGGATGGTGAGGAAGGTGATGAGAAATGCGGGTGTGAAGAAGGCTCCGGGTGGAAGCTTTATTGAAATTAATAACAGAGTATATGAATTTCTTGCTGGAGATAAGTCAGGTTCTCAGTTACAAGGGATCTATCAAGTCTTGTGCAAGATAATTGTGCAGTTGAAAATGGTCGGATTGTTACAGGAGGAATGGAGTAAGTTTCTTGACTACGATGAGTGA

Coding sequence (CDS)

ATGTTGGATGCTGAGCTTGCAGAGCAGGCTTTGAGGCATCTTGCAAAGCTGGAGCCTGAAAATAGTGGGAATTATACACTCTTATCCAACACATATGCTGCTCTTGGCAGGTGGAATGAATCTGGGATGGTGAGGAAGGTGATGAGAAATGCGGGTGTGAAGAAGGCTCCGGGTGGAAGCTTTATTGAAATTAATAACAGAGTATATGAATTTCTTGCTGGAGATAAGTCAGGTTCTCAGTTACAAGGGATCTATCAAGTCTTGTGCAAGATAATTGTGCAGTTGAAAATGGTCGGATTGTTACAGGAGGAATGGAGTAAGTTTCTTGACTACGATGAGTGA

Protein sequence

MLDAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFIEINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE
Homology
[Close]
BLAST of Tan0019216 vs. ExPASy Swiss-Prot
Match: Q9FMA1 (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E13 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.7e-21
Identity = 48/94 (51.06%), Postives = 70/94 (74.47%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           D EL E+AL  L KLEP NSGNY LL+N Y+ LGRW+ES M+R +M+  GVKK  G S I
Sbjct: 434 DLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSI 493

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLK 97
           E+ NRVY+F++GD +  Q++ I+++L ++ +Q++
Sbjct: 494 EVENRVYKFISGDLTHPQVERIHEILQEMDLQIQ 527

[Close]
BLAST of Tan0019216 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           D++LAE A   + +LEP +SG+Y LLSN YA+  RW++   +RK M   GVKK PG S +
Sbjct: 407 DSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 466

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           E+ NRV+EFL GDKS  Q   IY  L ++  +L+  G + +  + ++D +E
Sbjct: 467 EVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEE 517

[Close]
BLAST of Tan0019216 vs. ExPASy Swiss-Prot
Match: Q9SR82 (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-17
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           D +LAE  L+ L  LEP N+GNY  LSN Y+  GRW+E+  VR +M   G+KK PG S+I
Sbjct: 497 DTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWI 556

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           E+  +V+EFLA DKS      IY  L  +  +++++G +      F D +E
Sbjct: 557 ELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEE 607

[Close]
BLAST of Tan0019216 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.0e-17
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           + EL E    +L K+EPEN G+Y LLSN YA+ GRWNE    R ++ + G+KK PG S I
Sbjct: 553 NVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSI 612

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGL----------LQEEWSK 108
           EI++ V+EF+ GDK   + + IY +L ++ V L+  G           ++EEW +
Sbjct: 613 EIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKE 667

[Close]
BLAST of Tan0019216 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           D +  E AL+ L +L+P NSG Y LLSN YA  GRW E   +R  M   G+ K PG S++
Sbjct: 385 DIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYV 444

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           E+   V+EF+ GD+S  + + IY +L +I+ +L+  G + +     LD +E
Sbjct: 445 EVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNE 495

[Close]
BLAST of Tan0019216 vs. NCBI nr
Match: XP_022147643.1 (pentatricopeptide repeat-containing protein At5g56310 [Momordica charantia] >XP_022147644.1 pentatricopeptide repeat-containing protein At5g56310 [Momordica charantia] >XP_022147645.1 pentatricopeptide repeat-containing protein At5g56310 [Momordica charantia])

HSP 1 Score: 203.8 bits (517), Expect = 8.1e-49
Identity = 100/111 (90.09%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DAELAEQALRHLA+LEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI
Sbjct: 438 DAELAEQALRHLAELEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 497

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINN+VYEFLAGDKS SQL  I+ VLCK IVQLKM GLLQ+EWSKFLD+DE
Sbjct: 498 EINNKVYEFLAGDKSDSQLHEIFHVLCKTIVQLKMAGLLQDEWSKFLDFDE 548

[Close]
BLAST of Tan0019216 vs. NCBI nr
Match: XP_023515616.1 (pentatricopeptide repeat-containing protein At5g56310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 4.0e-48
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI
Sbjct: 438 DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 497

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINNRV+EFLAGD+S SQL GIY VLC IIVQLKM G   EEWSKFL+YDE
Sbjct: 498 EINNRVHEFLAGDRSESQLHGIYPVLCNIIVQLKMAGSYPEEWSKFLNYDE 548

[Close]
BLAST of Tan0019216 vs. NCBI nr
Match: XP_022960640.1 (pentatricopeptide repeat-containing protein At5g56310 [Cucurbita moschata])

HSP 1 Score: 200.7 bits (509), Expect = 6.8e-48
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DA+LAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI
Sbjct: 435 DADLAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 494

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINNRV+EFLAGD+S SQL GIY VLC IIVQLKM G   EEWSKFL+YDE
Sbjct: 495 EINNRVHEFLAGDRSDSQLHGIYPVLCNIIVQLKMAGSYPEEWSKFLNYDE 545

[Close]
BLAST of Tan0019216 vs. NCBI nr
Match: KAG7023735.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 6.8e-48
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DA+LAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI
Sbjct: 438 DADLAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 497

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINNRV+EFLAGD+S SQL GIY VLC IIVQLKM G   EEWSKFL+YDE
Sbjct: 498 EINNRVHEFLAGDRSDSQLHGIYPVLCNIIVQLKMAGSYPEEWSKFLNYDE 548

[Close]
BLAST of Tan0019216 vs. NCBI nr
Match: KAG6590068.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 98/111 (88.29%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DA+LAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI
Sbjct: 438 DADLAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 497

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINNRV+EFLAGD+S SQ+ GIY VLC IIVQLKM G   EEWSKFL+YDE
Sbjct: 498 EINNRVHEFLAGDRSESQIHGIYPVLCNIIVQLKMAGSYPEEWSKFLNYDE 548

[Close]
BLAST of Tan0019216 vs. ExPASy TrEMBL
Match: A0A6J1D0Q9 (pentatricopeptide repeat-containing protein At5g56310 OS=Momordica charantia OX=3673 GN=LOC111016516 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.9e-49
Identity = 100/111 (90.09%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DAELAEQALRHLA+LEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI
Sbjct: 438 DAELAEQALRHLAELEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 497

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINN+VYEFLAGDKS SQL  I+ VLCK IVQLKM GLLQ+EWSKFLD+DE
Sbjct: 498 EINNKVYEFLAGDKSDSQLHEIFHVLCKTIVQLKMAGLLQDEWSKFLDFDE 548

[Close]
BLAST of Tan0019216 vs. ExPASy TrEMBL
Match: A0A6J1H9N0 (pentatricopeptide repeat-containing protein At5g56310 OS=Cucurbita moschata OX=3662 GN=LOC111461370 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.3e-48
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DA+LAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI
Sbjct: 435 DADLAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 494

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINNRV+EFLAGD+S SQL GIY VLC IIVQLKM G   EEWSKFL+YDE
Sbjct: 495 EINNRVHEFLAGDRSDSQLHGIYPVLCNIIVQLKMAGSYPEEWSKFLNYDE 545

[Close]
BLAST of Tan0019216 vs. ExPASy TrEMBL
Match: A0A6J1JID8 (pentatricopeptide repeat-containing protein At5g56310 OS=Cucurbita maxima OX=3661 GN=LOC111484870 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.7e-47
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DA+LAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI
Sbjct: 438 DADLAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 497

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINNRVYEFLAGD+S SQL GIY VLC IIVQLKM G   EE SKFL+YDE
Sbjct: 498 EINNRVYEFLAGDRSDSQLHGIYPVLCNIIVQLKMAGSYPEEVSKFLNYDE 548

[Close]
BLAST of Tan0019216 vs. ExPASy TrEMBL
Match: A0A5D3CFJ6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001140 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-44
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DA LA+QAL+HLAKLEPENSGNY LLSNTYAALGRWNESG VRK+MRNAGVKKAPGGS I
Sbjct: 438 DAGLAQQALKHLAKLEPENSGNYVLLSNTYAALGRWNESGTVRKLMRNAGVKKAPGGSVI 497

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINNRVYEFLAGDKS S +  IY VLCKII+QLKM G  QEEWSKFL+YDE
Sbjct: 498 EINNRVYEFLAGDKSDSHVHEIYHVLCKIILQLKMAGSYQEEWSKFLNYDE 548

[Close]
BLAST of Tan0019216 vs. ExPASy TrEMBL
Match: A0A5A7UQ55 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001200 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.0e-44
Identity = 91/111 (81.98%), Postives = 98/111 (88.29%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           DA LA+QAL+HLAKLEPENSGNY LLSNTYAALGRWNESG VRK+MRNAGVKKAPGGS I
Sbjct: 438 DAGLAQQALKHLAKLEPENSGNYVLLSNTYAALGRWNESGTVRKLMRNAGVKKAPGGSVI 497

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           EINNRVYEFLAGDKS S +  +Y VLCKII+QLKM G  QEEW KFL+YDE
Sbjct: 498 EINNRVYEFLAGDKSDSHVHEVYHVLCKIILQLKMAGSYQEEWCKFLNYDE 548

[Close]
BLAST of Tan0019216 vs. TAIR 10
Match: AT5G56310.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-22
Identity = 48/94 (51.06%), Postives = 70/94 (74.47%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           D EL E+AL  L KLEP NSGNY LL+N Y+ LGRW+ES M+R +M+  GVKK  G S I
Sbjct: 434 DLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSI 493

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLK 97
           E+ NRVY+F++GD +  Q++ I+++L ++ +Q++
Sbjct: 494 EVENRVYKFISGDLTHPQVERIHEILQEMDLQIQ 527

[Close]
BLAST of Tan0019216 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-19
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           D++LAE A   + +LEP +SG+Y LLSN YA+  RW++   +RK M   GVKK PG S +
Sbjct: 407 DSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 466

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           E+ NRV+EFL GDKS  Q   IY  L ++  +L+  G + +  + ++D +E
Sbjct: 467 EVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEE 517

[Close]
BLAST of Tan0019216 vs. TAIR 10
Match: AT4G21065.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-19
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           D++LAE A   + +LEP +SG+Y LLSN YA+  RW++   +RK M   GVKK PG S +
Sbjct: 274 DSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLV 333

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           E+ NRV+EFL GDKS  Q   IY  L ++  +L+  G + +  + ++D +E
Sbjct: 334 EVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEE 384

[Close]
BLAST of Tan0019216 vs. TAIR 10
Match: AT3G08820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-18
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           D +LAE  L+ L  LEP N+GNY  LSN Y+  GRW+E+  VR +M   G+KK PG S+I
Sbjct: 497 DTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWI 556

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGLLQEEWSKFLDYDE 114
           E+  +V+EFLA DKS      IY  L  +  +++++G +      F D +E
Sbjct: 557 ELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEE 607

[Close]
BLAST of Tan0019216 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-18
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 0 

Query: 3   DAELAEQALRHLAKLEPENSGNYTLLSNTYAALGRWNESGMVRKVMRNAGVKKAPGGSFI 62
           + EL E    +L K+EPEN G+Y LLSN YA+ GRWNE    R ++ + G+KK PG S I
Sbjct: 553 NVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSI 612

Query: 63  EINNRVYEFLAGDKSGSQLQGIYQVLCKIIVQLKMVGL----------LQEEWSK 108
           EI++ V+EF+ GDK   + + IY +L ++ V L+  G           ++EEW +
Sbjct: 613 EIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKE 667

The following BLAST results are available for this feature:
BLAST of Tan0019216 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FMA15.7e-2151.06Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana OX... [more]
A8MQA32.6e-1843.24Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX... [more]
Q9SR822.2e-1742.34Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th... [more]
Q9LN015.0e-1740.87Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q683I91.1e-1639.64Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX... [more]
BLAST of Tan0019216 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147643.18.1e-4990.09pentatricopeptide repeat-containing protein At5g56310 [Momordica charantia] >XP_... [more]
XP_023515616.14.0e-4890.09pentatricopeptide repeat-containing protein At5g56310 [Cucurbita pepo subsp. pep... [more]
XP_022960640.16.8e-4889.19pentatricopeptide repeat-containing protein At5g56310 [Cucurbita moschata][more]
KAG7023735.16.8e-4889.19Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6590068.11.5e-4788.29Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of Tan0019216 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D0Q93.9e-4990.09pentatricopeptide repeat-containing protein At5g56310 OS=Momordica charantia OX=... [more]
A0A6J1H9N03.3e-4889.19pentatricopeptide repeat-containing protein At5g56310 OS=Cucurbita moschata OX=3... [more]
A0A6J1JID83.7e-4789.19pentatricopeptide repeat-containing protein At5g56310 OS=Cucurbita maxima OX=366... [more]
A0A5D3CFJ61.0e-4483.78Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7UQ555.0e-4481.98Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of Tan0019216 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G56310.14.0e-2251.06Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G21065.11.9e-1943.24Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G21065.21.9e-1943.24Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G08820.11.6e-1842.34Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G08070.13.5e-1840.87Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 3..107
NoneNo IPR availablePANTHERPTHR47928:SF80PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 3..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019216.1Tan0019216.1mRNA