Tan0019174 (gene) Snake gourd v1

Overview


Name	Tan0019174
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ankyrin repeat-containing protein ITN1-like
Location	LG04: 86161140 .. 86161526 (-)
RNA-Seq Expression	Tan0019174
Synteny	Tan0019174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATAAATTCCGAGAACAAGGAAGGGCTGACAGCCCTTGACATGTTGGACGAGCTCGCCGTCAATGGCACCGAGGAATTTCAAGTTCTTGAAGACATGTTGAAAAATGTCGGCGGCGAAAGAAGAAGATCAAAACGGACACCCAATTTCACAGCAATTAATGAGGAAGAGGAGTCGATTCCTTCTTTGGATCCAAACTCGGAGCATCATTCACCAGGAGGTCCCTTAGATGATAGGAAGGAAGATAGAGTTGAAAAAGAAAACGAAAATGAAAGTGAGAATGAGAATGAAATTGAAAATGAAAATGTGGGGGACGATATTAATCAAGTTGAGGATGAAGTTGAAAGACAATCCGATATCATCGGATCAATGGCAAGTCATTAA

mRNA sequence

ATGCCTATAAATTCCGAGAACAAGGAAGGGCTGACAGCCCTTGACATGTTGGACGAGCTCGCCGTCAATGGCACCGAGGAATTTCAAGTTCTTGAAGACATGTTGAAAAATGTCGGCGGCGAAAGAAGAAGATCAAAACGGACACCCAATTTCACAGCAATTAATGAGGAAGAGGAGTCGATTCCTTCTTTGGATCCAAACTCGGAGCATCATTCACCAGGAGGTCCCTTAGATGATAGGAAGGAAGATAGAGTTGAAAAAGAAAACGAAAATGAAAGTGAGAATGAGAATGAAATTGAAAATGAAAATGTGGGGGACGATATTAATCAAGTTGAGGATGAAGTTGAAAGACAATCCGATATCATCGGATCAATGGCAAGTCATTAA

Coding sequence (CDS)

ATGCCTATAAATTCCGAGAACAAGGAAGGGCTGACAGCCCTTGACATGTTGGACGAGCTCGCCGTCAATGGCACCGAGGAATTTCAAGTTCTTGAAGACATGTTGAAAAATGTCGGCGGCGAAAGAAGAAGATCAAAACGGACACCCAATTTCACAGCAATTAATGAGGAAGAGGAGTCGATTCCTTCTTTGGATCCAAACTCGGAGCATCATTCACCAGGAGGTCCCTTAGATGATAGGAAGGAAGATAGAGTTGAAAAAGAAAACGAAAATGAAAGTGAGAATGAGAATGAAATTGAAAATGAAAATGTGGGGGACGATATTAATCAAGTTGAGGATGAAGTTGAAAGACAATCCGATATCATCGGATCAATGGCAAGTCATTAA

Protein sequence

MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEEEESIPSLDPNSEHHSPGGPLDDRKEDRVEKENENESENENEIENENVGDDINQVEDEVERQSDIIGSMASH

Homology

[Close]

BLAST of Tan0019174 vs. NCBI nr
Match: XP_022153605.1 (ankyrin repeat-containing protein At2g01680-like [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 1   MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEE--- 60
           M IN +N+EGLTALDMLD LAVNGTEEFQ LEDMLKN GG+R+             E   
Sbjct: 298 MWINCQNEEGLTALDMLDNLAVNGTEEFQTLEDMLKNAGGKRKIELTDSKIIVPTSEKGE 357

Query: 61  --EESIPSLDPNSEHHSPGGPLDDRKEDRVEKENENESENENEIENENVGD-DINQVEDE 119
             +E I SLDPN           D   D+ E+E +  S + N +E + +   D++  + E
Sbjct: 358 WIQEWINSLDPNVLEEDHLQKSIDLDHDKKEEEKKIHSLDPNLLEEDGLQKIDLDHGKKE 417

[Close]

BLAST of Tan0019174 vs. NCBI nr
Match: XP_022153622.1 (ankyrin repeat-containing protein ITN1-like [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 9.6e-06
Identity = 49/128 (38.28%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 1   MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEEE-- 60
           MPIN +N EGLT LDMLD LA    E+FQ+LEDMLKN GG+R+           N+ E  
Sbjct: 291 MPINRQNTEGLTPLDMLDNLAATDIEKFQILEDMLKNAGGKRKIELTNSTVPTSNKGELV 350

Query: 61  -ESIPSLDPNSEHHSPGGPLDDRKEDRVEKEN-ENESENENEIENENVGDD----INQVE 120
            E + SLDPN             +ED ++K + ++  + E++I++EN+G +     N  +
Sbjct: 351 QEWVHSLDPNL-----------FEEDGLQKTDLDHNEKEEDKIDHENLGSNNVIRANDEQ 407

[Close]

BLAST of Tan0019174 vs. NCBI nr
Match: XP_022153567.1 (ankyrin repeat-containing protein ITN1-like [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-05
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 1   MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEEE-- 60
           M IN +N EGLT LDMLD LA + T++F++LEDML+N GG+R+           N+ E  
Sbjct: 300 MMINRQNSEGLTPLDMLDNLAASDTKKFKILEDMLRNAGGKRKIELTNSTIPTSNKGELV 359

Query: 61  -ESIPSLDPNSEHHSPGGPLDDRKEDRVEKENENESENENEIENENVG-DDINQVEDEVE 120
            E + SLDPN         +D    DR EKE+E       EIE+EN+G +++    DE  
Sbjct: 360 REWVHSLDPNLLEEDGLQKID---LDRDEKEDE-------EIEHENLGSNNVIHAHDEQV 413

[Close]

BLAST of Tan0019174 vs. NCBI nr
Match: XP_022153623.1 (ankyrin repeat-containing protein ITN1-like [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 1   MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEEE-- 60
           MPIN  N EGLT LDMLD +A    ++ Q+LEDMLKNVGG+R+           N+ E  
Sbjct: 153 MPINRHNTEGLTPLDMLDNIAATDIKKLQILEDMLKNVGGKRKIELTNSTIPTSNKGELV 212

Query: 61  -ESIPSLDPNSEHHSPGGPLDDRKEDRVEKEN-ENESENENEIENENVGDD----INQVE 120
            E + SLDPN             +ED ++K + ++  + E++I++EN+G +     N  +
Sbjct: 213 QEWVHSLDPNL-----------FEEDGLQKTDLDHNEKEEDKIDHENLGSNNVIRANDEQ 269

[Close]

BLAST of Tan0019174 vs. ExPASy TrEMBL
Match: A0A6J1DH91 (ankyrin repeat-containing protein At2g01680-like OS=Momordica charantia OX=3673 GN=LOC111021072 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 1   MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEE--- 60
           M IN +N+EGLTALDMLD LAVNGTEEFQ LEDMLKN GG+R+             E   
Sbjct: 298 MWINCQNEEGLTALDMLDNLAVNGTEEFQTLEDMLKNAGGKRKIELTDSKIIVPTSEKGE 357

Query: 61  --EESIPSLDPNSEHHSPGGPLDDRKEDRVEKENENESENENEIENENVGD-DINQVEDE 119
             +E I SLDPN           D   D+ E+E +  S + N +E + +   D++  + E
Sbjct: 358 WIQEWINSLDPNVLEEDHLQKSIDLDHDKKEEEKKIHSLDPNLLEEDGLQKIDLDHGKKE 417

[Close]

BLAST of Tan0019174 vs. ExPASy TrEMBL
Match: A0A6J1DJF7 (ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LOC111021084 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-06
Identity = 49/128 (38.28%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 1   MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEEE-- 60
           MPIN +N EGLT LDMLD LA    E+FQ+LEDMLKN GG+R+           N+ E  
Sbjct: 291 MPINRQNTEGLTPLDMLDNLAATDIEKFQILEDMLKNAGGKRKIELTNSTVPTSNKGELV 350

Query: 61  -ESIPSLDPNSEHHSPGGPLDDRKEDRVEKEN-ENESENENEIENENVGDD----INQVE 120
            E + SLDPN             +ED ++K + ++  + E++I++EN+G +     N  +
Sbjct: 351 QEWVHSLDPNL-----------FEEDGLQKTDLDHNEKEEDKIDHENLGSNNVIRANDEQ 407

[Close]

BLAST of Tan0019174 vs. ExPASy TrEMBL
Match: A0A6J1DJA0 (ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LOC111021038 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 1   MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEEE-- 60
           M IN +N EGLT LDMLD LA + T++F++LEDML+N GG+R+           N+ E  
Sbjct: 300 MMINRQNSEGLTPLDMLDNLAASDTKKFKILEDMLRNAGGKRKIELTNSTIPTSNKGELV 359

Query: 61  -ESIPSLDPNSEHHSPGGPLDDRKEDRVEKENENESENENEIENENVG-DDINQVEDEVE 120
            E + SLDPN         +D    DR EKE+E       EIE+EN+G +++    DE  
Sbjct: 360 REWVHSLDPNLLEEDGLQKID---LDRDEKEDE-------EIEHENLGSNNVIHAHDEQV 413

[Close]

BLAST of Tan0019174 vs. ExPASy TrEMBL
Match: A0A6J1DHZ0 (ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LOC111021085 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 1   MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEEE-- 60
           MPIN  N EGLT LDMLD +A    ++ Q+LEDMLKNVGG+R+           N+ E  
Sbjct: 153 MPINRHNTEGLTPLDMLDNIAATDIKKLQILEDMLKNVGGKRKIELTNSTIPTSNKGELV 212

Query: 61  -ESIPSLDPNSEHHSPGGPLDDRKEDRVEKEN-ENESENENEIENENVGDD----INQVE 120
            E + SLDPN             +ED ++K + ++  + E++I++EN+G +     N  +
Sbjct: 213 QEWVHSLDPNL-----------FEEDGLQKTDLDHNEKEEDKIDHENLGSNNVIRANDEQ 269

[Close]

BLAST of Tan0019174 vs. ExPASy TrEMBL
Match: A0A6J1DJ89 (ankyrin repeat-containing protein At2g01680-like OS=Momordica charantia OX=3673 GN=LOC111021033 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-04
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 1   MPINSENKEGLTALDMLDELAVNGTEEFQVLEDMLKNVGGERRRSKRTPNFTAINEE--- 60
           M IN +N EGLTALDML+ L  N +EEFQ+LEDMLKN GG+R+             E   
Sbjct: 300 MWINYQNTEGLTALDMLNNLTGNDSEEFQILEDMLKNAGGKRKIELTDSTIIVSTSEKGE 359

Query: 61  --EESIPSLDPNSEHHSPGGPLDDRKEDRVEKENENESENENEIEN---ENVGDDINQVE 120
             +E I SLDPN           D   D+ E+E +  S + N +E    +N+  D  + E
Sbjct: 360 WIQEWINSLDPNLLEEDHLQNSIDLNHDKKEEEKKIHSLDPNLLEEDDLQNIDLDHGKKE 419

The following BLAST results are available for this feature:

BLAST of Tan0019174 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019174 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153605.1	3.3e-06	41.94	ankyrin repeat-containing protein At2g01680-like [Momordica charantia]	[more]
XP_022153622.1	9.6e-06	38.28	ankyrin repeat-containing protein ITN1-like [Momordica charantia]	[more]
XP_022153567.1	2.1e-05	40.32	ankyrin repeat-containing protein ITN1-like [Momordica charantia]	[more]
XP_022153623.1	1.1e-04	36.72	ankyrin repeat-containing protein ITN1-like [Momordica charantia]	[more]

BLAST of Tan0019174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DH91	1.6e-06	41.94	ankyrin repeat-containing protein At2g01680-like OS=Momordica charantia OX=3673 ...	[more]
A0A6J1DJF7	4.6e-06	38.28	ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1DJA0	1.0e-05	40.32	ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1DHZ0	5.1e-05	36.72	ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1DJ89	5.7e-04	39.37	ankyrin repeat-containing protein At2g01680-like OS=Momordica charantia OX=3673 ...	[more]

BLAST of Tan0019174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019174.1	Tan0019174.1	mRNA