Tan0019135 (gene) Snake gourd v1

Overview


Name	Tan0019135
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Location	LG01: 3853650 .. 3857882 (-)
RNA-Seq Expression	Tan0019135
Synteny	Tan0019135

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGTCTAGGGTTCGATTCTCACATTTTATCTTTTTTCGCAGTTTTTTTTTTTCCATTTCCCTCTGTCATCTTCAACCTCGAGCTCATGAAGAATCCCGATCCATCTCCTCCACGCAGAAAGGTAATCTAATTTTAAAATTACAGTTAAATCAAGTTTTCTTCTTCTTCAGCTTCAACTCGATTTAGATCTAAACCCTTCTCTCTCCCTTTCTTTTCCATTCGCAGGTTAAATTCGCCCCAAAATCCACGCCGCGCAGGAAGCCACCTCCCACTCCAAAAACGTACTCCTCTCAATCTCATCTTCTTCCACATTTTCGTTTCGGAATTTGTCAAAACTTACAGTCAACTTCTAGTTATCCCTATTTTGTTTGGCGAATTGCAGTGAAGACGAAGATGGCGATCGCAATGTTGCGCAAACTCGGTACCTCCTACGCCGTGCCACTGTAAGCTTCTTTGTTGTTTCTGTGGCTTTTCGAATTCTTCTGCGTGTTTTTGGTTTGTGTTTGGACGATTTTCTGTTTTGTGACTTCATTTTTATTTGCGTTTGAAAAATTTTCCTGAACTTGTGAGAGATGCTATTACCGACTGGTTTCTGTTTGGTTCCCGAGAAAAAAAATGTTGAATGGAAATGATAATTAATTTCGTTTTCGGGCAGCGTTTGGGGTTTTGGGTTTCACTTTTAGGTTGTTTCGAGCACATTGTTATAATAACTTTGATTTTAAATACGAACTATTATAATACAAACTAGCAATTCTATATTTTAAATAATATTATATAATTTCACAACTATTATAATTCGTTATTATAACTCACTCAGCGCCTCAAACAACATTTGTTGTTATATGAAAATGAAATTAATTTTTGGAGGAAATTCGTGTGTTTGGTTTACACGTGTGTGGCTCAATTTTAGGACCTTTTTCAAATTAGCTTTGAACGACTTGTGATATGATATGAGCATGTGGCATACACTAATACTAGTTTTTACAAACTCATTATTATTATATTAGATTAAATTACAAATTTAGTTTTGAATATTTGTGTCTATTTAATTTTTAAAACTTTCAAAATTACAAAATTTAGTCTCTAAACTTTCAAATTTTTTAAAATTCACGGATCTACTAAGCACATATGACATAATTGAAATTTTATGGTTTAATTAAACATAAAATTCAAATTTATATCTATTAGATCAATTAATTTTTAAAAAATTTGAATTCTTCGTGAATCTATTAGACACAAAATTGAAAGTTTAAGACTAATTAGACACCAAGTTCAGGAATCTATTAGACACTTCAACTAGCATGAAGTATGACTTATGACTAAGAGATTATATGTTTGAAACCCCTCGTCTCTAAATGTTGTTGAGCTCAAAAAAAAAAAAGACCTATTAGACACCTTTGAATTTTGTAAAGTTTTTTTTTGTTTTTTTGAAGGAATTTGTACTTAACTTAATATCTCAAATTGAGTAATGAATTGATTTTTTTGACCTGTAACCTGTTGAGTTAATGCTCATGAGTCAAGTAAGCATGTGACATTAGTTTCTGTAACTATATTAAATGTTTTGTGTTTTGTTGCTTTTTTTTTTTTTTTTTTTTGCATTTTGACTTTGTAGATGAGTATTAGATATCTTTTAACTAGATTTGAACATTTTCTTTACTCAGGTTTATTTTATTTTATATTTAGTTCAAACATATAAAGATGGAAATCTGAATATTTGTTCCGTCGGTCGAGTATATTATGCATTCATCAATTTGAGCTGGCTTCTTACTTAATTATGGATACTTATGATAATCGAAATAATTTCATATTGTTTTCAGCCTCGTGGATTCATTTTTCCTCTGTCAAATAACCATTTTATCCACGTGTAAATATATCGACATAGATTGAAAATATCTCATGTAAGTGATGGTTATGTAATGAAACTATTGTTTGATTTTTCACTTTGTCTACGTATTGAAAGAGCGATGAGTAGTATATATCCAACACAAGCTACATATTCGAGTTAAAAAGCAAAAGTCGATTAACATAACAGTGAGAATTGATTTGGTTTTCTTTCCCTTTTGCAGGAGAATCTTGGAAAACGTGGGAACAGGGTCGAGAAAAAATGTAAAGTCTTTCTCGAAATTTTGAACTTATATCAATAACTCTTTATTCTCCAAGTAATTTGGACGTTCTAATCGATATAAACGAATTTCTTTTCATTCATAAAATTCACAGAGGAGGACGGTATAAGATTGACAAGAGAAAATCCAAAGTTTCTAGCAAGAGAAGATGAAGTAAACATGAGTTTACTTGCTAACATTAATCAAACAGAGATGAAGATAAGATGAAGTTTCCATTGTTGCCTTATCATGATCTCTATTTCCATGTTCATACGTGCAGCTTCAGTGCAAGTCGCATTCGGTCCGGGTGCAGCATCATCATCATCTTCTATTAGAACATATGGACTTCCCAAAGTAGGAACCAGTAGTAAAAAGAATAACATTGAGCCTGATGATTCAGATGATGAGGAATCTATCTTTCCTCTGCCTATGGATGTTGAAGAAGATGGGAAACCTGTCGATAAAAAAGCCAAAGATGGAATAGCCGAAACCTCTATGGCTAGCAATGCTGCTATTGCAACCAAAACTAGAAAGAATTACAAAGAACCTTGGGTAATCTCTCTCTTTCTTTGTCTCACATATGGCACGCACATAGATTAACACCCTGATTTTATGACACTTTTTCAGGACTACCATAGTTCTTACTATCCTACAACGCTTCCTATGCGAATGCCTTATTCAGGAGATCCTAGTATGTCTCTATTCTTTTTTAGAGAAGAATAGCAAAAGTATCGCATTGTTTACCTTTAGGGCATATTTGGGAGTGATTTTAAAATGACCAAAGTCACTTTTGTCATATCCTTTTTAGTAATTTTGAGCATGAAAAAAGTGATTTTGGTCCTTCTCAAGCATGCTCTTAAGTTTTTGGTTTGTGAAAAGTGGTTTCTGGTACACAATGGTCTTAACCTTTACAAAGTCACTCATGAGCTTAAAATCAATCTTGAAAACAAAAGCAGACCCCTACTAGTCTAGATAAGTGCTTGCTTATCTATGCTGAAATAAAATTCTTAACTTGGTGGAGGATCATTCTGGCTTTGTTCTGTAATTGCTTACTCTCCTGCCTCTTTGTTGGATTTTAGAACTACTTGATGAAGCTGAGTTCAGGCAGGATGCCACGGATAGGGAGTATGATGAGAACGCTGAAGTTCCTGCCTTGGATCTTGGATTGCTGGTTTGTGAATGGATTGATTACTGTGGATTGTTTCATATATTAATCGCTAGCCTTTCTTCATGAAGAATCTTGTTACAGTATAGTGGCATTTTGGTACAGGAGGAAAATGTGGAGAATACCAGGTACTTTTTTCAGCTTCCTGTCCGTCTTCCTTTACCCAAACAATCATCTACTGCAAGAGGAAAGGAGAAAGTAGGAAGTTCGAGATCTTCAAACAGCACGGGCACATCAGCGCTCGGTGATTTGGAGAAACTGCCTGGTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGATACTCTTTACGACGTGAGTAATGTTGCTAACTTCTACAATCAAAATAGAGCAATGTCGAGTTTGTTTTTGTTACTGTTCTTGTTCTTTTGAGATCAGACCTTTTGGTTTTTATTTTGGGGCTGTTGCAGGTTTCCTCTGGTTCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGCGATCTCGGAGACATCGGTAAACGAGTCGTCGTGACACCGGATATTAGTTCCCTCTTGAATTCAATGGCTGATTGACTTGGAATGAATGTGAAGAAAAGAAAAGCCCGTGGATAGAACAACCAACAAAAGAAACAGAAAAAAGGACAGATCCTTGCAATGTCAAAATGGAATTGATAGCTGGCTGTGAACTTGTGACTGGAACTGCTGAAGATGATAACTTGGTGTGGAAAGTTGCATTTGGCTGCTCTTAGGATGTAAGATTCTTGACTAGACTGCCTCCTTTGTTAATTTTGATATGACAAGAACAGATTCATTCTCTCTGATTTCTAGCTGTGGAATAGGTTGTCATCAAAACAATGTTGATATTGTAAATGCTTTTTCTATCAAGAATGCAAATTGAGGAGAAGAGTTTTACTTTATTCATTAATAAAATTCCTG

mRNA sequence

CTTGTCTAGGGTTCGATTCTCACATTTTATCTTTTTTCGCAGTTTTTTTTTTTCCATTTCCCTCTGTCATCTTCAACCTCGAGCTCATGAAGAATCCCGATCCATCTCCTCCACGCAGAAAGGTTAAATTCGCCCCAAAATCCACGCCGCGCAGGAAGCCACCTCCCACTCCAAAAACTGAAGACGAAGATGGCGATCGCAATGTTGCGCAAACTCGGTACCTCCTACGCCGTGCCACTGAGAATCTTGGAAAACGTGGGAACAGGGTCGAGAAAAAATCTTCAGTGCAAGTCGCATTCGGTCCGGGTGCAGCATCATCATCATCTTCTATTAGAACATATGGACTTCCCAAAGTAGGAACCAGTAGTAAAAAGAATAACATTGAGCCTGATGATTCAGATGATGAGGAATCTATCTTTCCTCTGCCTATGGATGTTGAAGAAGATGGGAAACCTGTCGATAAAAAAGCCAAAGATGGAATAGCCGAAACCTCTATGGCTAGCAATGCTGCTATTGCAACCAAAACTAGAAAGAATTACAAAGAACCTTGGGACTACCATAGTTCTTACTATCCTACAACGCTTCCTATGCGAATGCCTTATTCAGGAGATCCTAAACTACTTGATGAAGCTGAGTTCAGGCAGGATGCCACGGATAGGGAGTATGATGAGAACGCTGAAGTTCCTGCCTTGGATCTTGGATTGCTGGAGGAAAATGTGGAGAATACCAGGTACTTTTTTCAGCTTCCTGTCCGTCTTCCTTTACCCAAACAATCATCTACTGCAAGAGGAAAGGAGAAAGTAGGAAGTTCGAGATCTTCAAACAGCACGGGCACATCAGCGCTCGGTGATTTGGAGAAACTGCCTGGTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGATACTCTTTACGACGTTTCCTCTGGTTCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGCGATCTCGGAGACATCGGTAAACGAGTCGTCGTGACACCGGATATTAGTTCCCTCTTGAATTCAATGGCTGATTGACTTGGAATGAATGTGAAGAAAAGAAAAGCCCGTGGATAGAACAACCAACAAAAGAAACAGAAAAAAGGACAGATCCTTGCAATGTCAAAATGGAATTGATAGCTGGCTGTGAACTTGTGACTGGAACTGCTGAAGATGATAACTTGGTGTGGAAAGTTGCATTTGGCTGCTCTTAGGATGTAAGATTCTTGACTAGACTGCCTCCTTTGTTAATTTTGATATGACAAGAACAGATTCATTCTCTCTGATTTCTAGCTGTGGAATAGGTTGTCATCAAAACAATGTTGATATTGTAAATGCTTTTTCTATCAAGAATGCAAATTGAGGAGAAGAGTTTTACTTTATTCATTAATAAAATTCCTG

Coding sequence (CDS)

ATGAAGAATCCCGATCCATCTCCTCCACGCAGAAAGGTTAAATTCGCCCCAAAATCCACGCCGCGCAGGAAGCCACCTCCCACTCCAAAAACTGAAGACGAAGATGGCGATCGCAATGTTGCGCAAACTCGGTACCTCCTACGCCGTGCCACTGAGAATCTTGGAAAACGTGGGAACAGGGTCGAGAAAAAATCTTCAGTGCAAGTCGCATTCGGTCCGGGTGCAGCATCATCATCATCTTCTATTAGAACATATGGACTTCCCAAAGTAGGAACCAGTAGTAAAAAGAATAACATTGAGCCTGATGATTCAGATGATGAGGAATCTATCTTTCCTCTGCCTATGGATGTTGAAGAAGATGGGAAACCTGTCGATAAAAAAGCCAAAGATGGAATAGCCGAAACCTCTATGGCTAGCAATGCTGCTATTGCAACCAAAACTAGAAAGAATTACAAAGAACCTTGGGACTACCATAGTTCTTACTATCCTACAACGCTTCCTATGCGAATGCCTTATTCAGGAGATCCTAAACTACTTGATGAAGCTGAGTTCAGGCAGGATGCCACGGATAGGGAGTATGATGAGAACGCTGAAGTTCCTGCCTTGGATCTTGGATTGCTGGAGGAAAATGTGGAGAATACCAGGTACTTTTTTCAGCTTCCTGTCCGTCTTCCTTTACCCAAACAATCATCTACTGCAAGAGGAAAGGAGAAAGTAGGAAGTTCGAGATCTTCAAACAGCACGGGCACATCAGCGCTCGGTGATTTGGAGAAACTGCCTGGTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGATACTCTTTACGACGTTTCCTCTGGTTCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGCGATCTCGGAGACATCGGTAAACGAGTCGTCGTGACACCGGATATTAGTTCCCTCTTGAATTCAATGGCTGATTGA

Protein sequence

MKNPDPSPPRRKVKFAPKSTPRRKPPPTPKTEDEDGDRNVAQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVEEDGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKLLDEAEFRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEKVGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD

Homology

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BLAST of Tan0019135 vs. ExPASy Swiss-Prot
Match: Q91WD1 (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-08
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 256 LEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLG 315
           L  L  G +GKLLI KSG ++L LG    DV+ G+ CSFLQ +V++   ++  G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLG 377

Query: 316 DIGKRVVVTPDISSLLN 330
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

[Close]

BLAST of Tan0019135 vs. ExPASy Swiss-Prot
Match: P05423 (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-07
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 256 LEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAI---NTEEGQCCDLG 315
           L  L  G +GKLLI KSG ++L LG    DV+ G+ CSFLQ +V++   ++  G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLG 377

Query: 316 DIGKRVVVTPDISSLLN 330
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

[Close]

BLAST of Tan0019135 vs. ExPASy Swiss-Prot
Match: Q5E9Z7 (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-07
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 236 KEKVGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFL 295
           +EK   +R + +T T     L  L  G +GKLLI KSG ++L LG    DV+ G+ CSFL
Sbjct: 303 QEKDREARLAENTCT-----LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFL 362

Query: 296 QHVVAI---NTEEGQCCDLGDIGKRVVVTPDISSLLN 330
           Q +V++   ++  G    LG I  ++V +P+  SLL+
Sbjct: 363 QELVSVGLGDSRTGDMTVLGHIKHKLVCSPNFESLLD 394

[Close]

BLAST of Tan0019135 vs. ExPASy Swiss-Prot
Match: Q8T1V7 (DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=44689 GN=polr3d PE=3 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-05
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 256 LEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINTEEG-----QCCD 315
           ++++P G +G L IYKSG   L++G   YD+SSG    FL+ V    T+ G      C  
Sbjct: 351 IKEMPSGKLGTLKIYKSGKSILKIGTVEYDISSGDKLKFLEEVQCFQTKGGPDNSPTCYT 410

Query: 316 LGDIGKRVVVTPDISSL 328
           LG   + +V  P IS +
Sbjct: 411 LGIPSQHLVAAPIISQI 427

[Close]

BLAST of Tan0019135 vs. ExPASy Swiss-Prot
Match: O74857 (DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc53 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.9e-04
Identity = 85/346 (24.57%), Postives = 134/346 (38.73%), Query Frame = 0


Query: 14  KFAPKSTPRRKPPPTPKTEDEDGDRNVAQTRYLLRRATENLGKRGNRVEKKSSVQVAFGP 73
           KF PK  PRRK  P    E++D D  V     +  +      +    ++  +S   A GP
Sbjct: 3   KFTPKFVPRRKNGP---VEEKDVDERVKIEFDVESQKKWKASRPKPEIKLTASGPFALGP 62

Query: 74  GAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVEEDGKPVDKKAKDGIA 133
            A+SS +     G P         N++ ++ DD  S        +E     D+   D + 
Sbjct: 63  NASSSGT-----GRPIGSVYVPPPNVKNEEKDDALSKLAASSGHDEGH---DEDMVDILK 122

Query: 134 ETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKLLDEAEFRQDAT-DRE 193
              +  N     KT    K+         P      +P S D KL   AE     T   +
Sbjct: 123 LREL--NGQEQGKTDIGGKD------LLVPIITDRMLPESNDEKLKHHAESAIHTTVINK 182

Query: 194 YDENAEVPALD-------LGL-----LEENVENTRYFFQLPVRLPL--------PKQSST 253
            DE  E  ALD       LGL     +E++ ++     Q P +LP         P   S+
Sbjct: 183 EDEEQERVALDLQSLAQHLGLTEQEGMEDHFKDQMVLMQFPDKLPRFMGDADVDPVWPSS 242

Query: 254 ARGKEKVGSSR--------SSNSTGTSALGDLEKL-------PGGCMGKLLIYKSGAIKL 313
              +E+ G             +      + DL  L       P G +G L +++SG   L
Sbjct: 243 EVKEEEAGEKTDVEEKKDPDKHGRENGNIDDLTSLPYPAFHPPAGQIGVLRVHQSGKTTL 302

Query: 314 RLGDTLYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGKRVVVTPD 324
            +G   + V SGS+C FLQ +  ++ +  +  +LG   +R++V+PD
Sbjct: 303 EMGGVNFVVQSGSDCLFLQEIAVVDYDSKRIWNLGSFERRMIVSPD 329

[Close]

BLAST of Tan0019135 vs. NCBI nr
Match: XP_038879339.1 (DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida])

HSP 1 Score: 521.2 bits (1341), Expect = 6.7e-144
Identity = 268/333 (80.48%), Postives = 298/333 (89.49%), Query Frame = 0


Query: 1   MKNPDPSPPRRKVKFAPKSTPRRKPPPTPKTEDEDGDRNVAQTRYLLRRATENLGKRGNR 60
           MKNPD SPPRRKVKFAPKS PRR+PPP  K EDEDGD  VAQTRYLLRRATENLGKRGN+
Sbjct: 1   MKNPDSSPPRRKVKFAPKSAPRRRPPPVQKIEDEDGDGYVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVEED 120
           V++KSSVQVAFGPGAAS+SSSIRTYG+PKV  SS+KN+IEPD  +DEE I PLPMDVEE+
Sbjct: 61  VQRKSSVQVAFGPGAASTSSSIRTYGVPKVENSSRKNDIEPDVDEDEEFILPLPMDVEEN 120

Query: 121 GKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKLLD 180
           GK  DKK KDGIAE   +S++AI TKT+K+YKEPWDYH+S YPTTLP+RMPYSGDP+ LD
Sbjct: 121 GKIFDKKTKDGIAE---SSSSAIVTKTKKDYKEPWDYHNSNYPTTLPIRMPYSGDPEQLD 180

Query: 181 EAEFRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEKVG 240
           EAEF QDATDREYDE++ +PALDLGLL+E  ENT+YFFQLP RLPLPKQSSTA GKEKVG
Sbjct: 181 EAEFGQDATDREYDEDSVIPALDLGLLDEKTENTKYFFQLPARLPLPKQSSTATGKEKVG 240

Query: 241 SSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVA 300
           + RSS S G+S LGDL+KL  GCMGKLLIYKSGAIKLRLGDTLYDVSSGS+CSFLQHVVA
Sbjct: 241 NLRSSKSMGSSELGDLKKLSAGCMGKLLIYKSGAIKLRLGDTLYDVSSGSDCSFLQHVVA 300

Query: 301 INTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           INT+EGQCCDLGDIGKRV+VTPDISSLLNSM +
Sbjct: 301 INTKEGQCCDLGDIGKRVIVTPDISSLLNSMTN 330

[Close]

BLAST of Tan0019135 vs. NCBI nr
Match: XP_022141051.1 (DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Momordica charantia])

HSP 1 Score: 513.8 bits (1322), Expect = 1.1e-141
Identity = 263/334 (78.74%), Postives = 293/334 (87.72%), Query Frame = 0


Query: 1   MKNPDPSP-PRRKVKFAPKSTPRRKPPPTPKTEDEDGDRNVAQTRYLLRRATENLGKRGN 60
           MKNPDPS  PRRKVKFAPK TPR++PPP PK EDEDG++N AQTRYLLRRATENLGKRG 
Sbjct: 1   MKNPDPSSRPRRKVKFAPKPTPRKRPPPAPKPEDEDGNQNAAQTRYLLRRATENLGKRGT 60

Query: 61  RVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVEE 120
           +VEKK SVQVAFGPGAAS+SSSIRTYG+PKVG SS+KNNIEP+ SDDEESI PLP+DVEE
Sbjct: 61  KVEKKPSVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEE 120

Query: 121 DGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKLL 180
           DG   D+K++DG  E++MA+NA + TK +K+Y+EPWDYH SYYP TLP+R PYSG P+LL
Sbjct: 121 DGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNTLPLRKPYSGHPELL 180

Query: 181 DEAEFRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEKV 240
           D+AEF  DA DREYDENA +PALDL LLEE  E T YFFQLP  LPLPKQSSTA  KEKV
Sbjct: 181 DKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKV 240

Query: 241 GSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVV 300
           GSSRSSNS GTS LGDL+KLPGG MGKLLIYKSGA+KLRLG+TLYDVSSGSNCSFLQHVV
Sbjct: 241 GSSRSSNSKGTSELGDLKKLPGGYMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVV 300

Query: 301 AINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           AINTEEG CCDLGD+GKRVVVTPDISSLLN++ D
Sbjct: 301 AINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD 334

[Close]

BLAST of Tan0019135 vs. NCBI nr
Match: XP_022141050.1 (DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Momordica charantia])

HSP 1 Score: 509.2 bits (1310), Expect = 2.7e-140
Identity = 263/335 (78.51%), Postives = 293/335 (87.46%), Query Frame = 0


Query: 1   MKNPDPSP-PRRKVKFAPKSTPRRKPPPTPKTEDEDGDRNVAQTRYLLRRATENLGKRGN 60
           MKNPDPS  PRRKVKFAPK TPR++PPP PK EDEDG++N AQTRYLLRRATENLGKRG 
Sbjct: 1   MKNPDPSSRPRRKVKFAPKPTPRKRPPPAPKPEDEDGNQNAAQTRYLLRRATENLGKRGT 60

Query: 61  RVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVEE 120
           +VEKK SVQVAFGPGAAS+SSSIRTYG+PKVG SS+KNNIEP+ SDDEESI PLP+DVEE
Sbjct: 61  KVEKKPSVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEE 120

Query: 121 DGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKLL 180
           DG   D+K++DG  E++MA+NA + TK +K+Y+EPWDYH SYYP TLP+R PYSG P+LL
Sbjct: 121 DGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNTLPLRKPYSGHPELL 180

Query: 181 DEAEFRQDATDREYDENAEVPALDLGLL-EENVENTRYFFQLPVRLPLPKQSSTARGKEK 240
           D+AEF  DA DREYDENA +PALDL LL EE  E T YFFQLP  LPLPKQSSTA  KEK
Sbjct: 181 DKAEFGLDAPDREYDENAAIPALDLELLQEEKEEKTMYFFQLPACLPLPKQSSTATRKEK 240

Query: 241 VGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV 300
           VGSSRSSNS GTS LGDL+KLPGG MGKLLIYKSGA+KLRLG+TLYDVSSGSNCSFLQHV
Sbjct: 241 VGSSRSSNSKGTSELGDLKKLPGGYMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHV 300

Query: 301 VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           VAINTEEG CCDLGD+GKRVVVTPDISSLLN++ D
Sbjct: 301 VAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD 335

[Close]

BLAST of Tan0019135 vs. NCBI nr
Match: KAA0044650.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa])

HSP 1 Score: 495.0 bits (1273), Expect = 5.2e-136
Identity = 257/335 (76.72%), Postives = 292/335 (87.16%), Query Frame = 0


Query: 1   MKNPDPSPPRRKVKFAPKSTPRRKPPPTP--KTEDEDGDRNVAQTRYLLRRATENLGKRG 60
           MKN D SPPRRKVKFAPKS+ RR+PPP P  KTEDEDG+  VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NRVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVE 120
           N+VE+KSSVQVAFGPGA S+SSSIRTYG+PKV   S+KN+IEP+  +DEE + P+ MDV 
Sbjct: 61  NKVERKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVN 120

Query: 121 EDGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKL 180
           EDGK  DKK KDGIAE   +S++A+ TKT+++YKEPWDY +SYYPTTLP+RMPYSGDP+ 
Sbjct: 121 EDGKFFDKKTKDGIAE---SSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPER 180

Query: 181 LDEAEFRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEK 240
           LDEAEF QDA +REYDEN+ +PALDLGL +EN ENT+YFFQLP RLPLPKQSSTA GKEK
Sbjct: 181 LDEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEK 240

Query: 241 VGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV 300
           VG+SRSSNST +S L DL+KL  GCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHV
Sbjct: 241 VGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHV 300

Query: 301 VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           VAINTE+GQCCDLGDIGKRVVVTPDISSLLNS+ +
Sbjct: 301 VAINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTN 332

[Close]

BLAST of Tan0019135 vs. NCBI nr
Match: XP_004146914.1 (DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus] >KGN53151.1 hypothetical protein Csa_015254 [Cucumis sativus])

HSP 1 Score: 494.6 bits (1272), Expect = 6.8e-136
Identity = 256/335 (76.42%), Postives = 290/335 (86.57%), Query Frame = 0


Query: 1   MKNPDPSPPRRKVKFAPKSTPRRKPPPTP--KTEDEDGDRNVAQTRYLLRRATENLGKRG 60
           MKN DPSPPRRKVKFAPKS+ R++PPP P  KTEDEDG+  VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NRVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVE 120
           N+VEKKSSVQVAFGPGA S+SSSIRTYG+PKV   S+KN+IEP+  +DEE + P+  DV 
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120

Query: 121 EDGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKL 180
           EDGK  DKK KDGI E   +S++A+ TKT+++YKEPWDY +SYYPTTLP+RMPYSGDP+ 
Sbjct: 121 EDGKYFDKKTKDGITE---SSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPER 180

Query: 181 LDEAEFRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEK 240
           LDEAEF QD  +REYDEN+ +PALDLGLL+EN E+T+YFFQLP RLPLPKQSSTA GKEK
Sbjct: 181 LDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEK 240

Query: 241 VGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV 300
           VG+SRSSNST +S L DL+KL  GCMGKLLIYKSGAIKLRLGD LYDVSSGSNCSFLQHV
Sbjct: 241 VGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHV 300

Query: 301 VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           VAINTEEGQCCDLGDIG RVVVTPDISSLLNS+ +
Sbjct: 301 VAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTN 332

[Close]

BLAST of Tan0019135 vs. ExPASy TrEMBL
Match: A0A6J1CHV0 (DNA-directed RNA polymerase III subunit RPC4-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011545 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 5.2e-142
Identity = 263/334 (78.74%), Postives = 293/334 (87.72%), Query Frame = 0


Query: 1   MKNPDPSP-PRRKVKFAPKSTPRRKPPPTPKTEDEDGDRNVAQTRYLLRRATENLGKRGN 60
           MKNPDPS  PRRKVKFAPK TPR++PPP PK EDEDG++N AQTRYLLRRATENLGKRG 
Sbjct: 1   MKNPDPSSRPRRKVKFAPKPTPRKRPPPAPKPEDEDGNQNAAQTRYLLRRATENLGKRGT 60

Query: 61  RVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVEE 120
           +VEKK SVQVAFGPGAAS+SSSIRTYG+PKVG SS+KNNIEP+ SDDEESI PLP+DVEE
Sbjct: 61  KVEKKPSVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEE 120

Query: 121 DGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKLL 180
           DG   D+K++DG  E++MA+NA + TK +K+Y+EPWDYH SYYP TLP+R PYSG P+LL
Sbjct: 121 DGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNTLPLRKPYSGHPELL 180

Query: 181 DEAEFRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEKV 240
           D+AEF  DA DREYDENA +PALDL LLEE  E T YFFQLP  LPLPKQSSTA  KEKV
Sbjct: 181 DKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKV 240

Query: 241 GSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVV 300
           GSSRSSNS GTS LGDL+KLPGG MGKLLIYKSGA+KLRLG+TLYDVSSGSNCSFLQHVV
Sbjct: 241 GSSRSSNSKGTSELGDLKKLPGGYMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVV 300

Query: 301 AINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           AINTEEG CCDLGD+GKRVVVTPDISSLLN++ D
Sbjct: 301 AINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD 334

[Close]

BLAST of Tan0019135 vs. ExPASy TrEMBL
Match: A0A6J1CGV5 (DNA-directed RNA polymerase III subunit RPC4-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011545 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.3e-140
Identity = 263/335 (78.51%), Postives = 293/335 (87.46%), Query Frame = 0


Query: 1   MKNPDPSP-PRRKVKFAPKSTPRRKPPPTPKTEDEDGDRNVAQTRYLLRRATENLGKRGN 60
           MKNPDPS  PRRKVKFAPK TPR++PPP PK EDEDG++N AQTRYLLRRATENLGKRG 
Sbjct: 1   MKNPDPSSRPRRKVKFAPKPTPRKRPPPAPKPEDEDGNQNAAQTRYLLRRATENLGKRGT 60

Query: 61  RVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVEE 120
           +VEKK SVQVAFGPGAAS+SSSIRTYG+PKVG SS+KNNIEP+ SDDEESI PLP+DVEE
Sbjct: 61  KVEKKPSVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEE 120

Query: 121 DGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKLL 180
           DG   D+K++DG  E++MA+NA + TK +K+Y+EPWDYH SYYP TLP+R PYSG P+LL
Sbjct: 121 DGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNTLPLRKPYSGHPELL 180

Query: 181 DEAEFRQDATDREYDENAEVPALDLGLL-EENVENTRYFFQLPVRLPLPKQSSTARGKEK 240
           D+AEF  DA DREYDENA +PALDL LL EE  E T YFFQLP  LPLPKQSSTA  KEK
Sbjct: 181 DKAEFGLDAPDREYDENAAIPALDLELLQEEKEEKTMYFFQLPACLPLPKQSSTATRKEK 240

Query: 241 VGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV 300
           VGSSRSSNS GTS LGDL+KLPGG MGKLLIYKSGA+KLRLG+TLYDVSSGSNCSFLQHV
Sbjct: 241 VGSSRSSNSKGTSELGDLKKLPGGYMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHV 300

Query: 301 VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           VAINTEEG CCDLGD+GKRVVVTPDISSLLN++ D
Sbjct: 301 VAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD 335

[Close]

BLAST of Tan0019135 vs. ExPASy TrEMBL
Match: A0A5A7TN83 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004050 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.5e-136
Identity = 257/335 (76.72%), Postives = 292/335 (87.16%), Query Frame = 0


Query: 1   MKNPDPSPPRRKVKFAPKSTPRRKPPPTP--KTEDEDGDRNVAQTRYLLRRATENLGKRG 60
           MKN D SPPRRKVKFAPKS+ RR+PPP P  KTEDEDG+  VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NRVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVE 120
           N+VE+KSSVQVAFGPGA S+SSSIRTYG+PKV   S+KN+IEP+  +DEE + P+ MDV 
Sbjct: 61  NKVERKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVN 120

Query: 121 EDGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKL 180
           EDGK  DKK KDGIAE   +S++A+ TKT+++YKEPWDY +SYYPTTLP+RMPYSGDP+ 
Sbjct: 121 EDGKFFDKKTKDGIAE---SSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPER 180

Query: 181 LDEAEFRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEK 240
           LDEAEF QDA +REYDEN+ +PALDLGL +EN ENT+YFFQLP RLPLPKQSSTA GKEK
Sbjct: 181 LDEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEK 240

Query: 241 VGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV 300
           VG+SRSSNST +S L DL+KL  GCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHV
Sbjct: 241 VGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHV 300

Query: 301 VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           VAINTE+GQCCDLGDIGKRVVVTPDISSLLNS+ +
Sbjct: 301 VAINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTN 332

[Close]

BLAST of Tan0019135 vs. ExPASy TrEMBL
Match: A0A0A0KZ61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.3e-136
Identity = 256/335 (76.42%), Postives = 290/335 (86.57%), Query Frame = 0


Query: 1   MKNPDPSPPRRKVKFAPKSTPRRKPPPTP--KTEDEDGDRNVAQTRYLLRRATENLGKRG 60
           MKN DPSPPRRKVKFAPKS+ R++PPP P  KTEDEDG+  VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NRVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVE 120
           N+VEKKSSVQVAFGPGA S+SSSIRTYG+PKV   S+KN+IEP+  +DEE + P+  DV 
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120

Query: 121 EDGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKL 180
           EDGK  DKK KDGI E   +S++A+ TKT+++YKEPWDY +SYYPTTLP+RMPYSGDP+ 
Sbjct: 121 EDGKYFDKKTKDGITE---SSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPER 180

Query: 181 LDEAEFRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEK 240
           LDEAEF QD  +REYDEN+ +PALDLGLL+EN E+T+YFFQLP RLPLPKQSSTA GKEK
Sbjct: 181 LDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEK 240

Query: 241 VGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV 300
           VG+SRSSNST +S L DL+KL  GCMGKLLIYKSGAIKLRLGD LYDVSSGSNCSFLQHV
Sbjct: 241 VGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHV 300

Query: 301 VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           VAINTEEGQCCDLGDIG RVVVTPDISSLLNS+ +
Sbjct: 301 VAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTN 332

[Close]

BLAST of Tan0019135 vs. ExPASy TrEMBL
Match: A0A1S3BYJ9 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC103494480 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 1.2e-135
Identity = 257/335 (76.72%), Postives = 291/335 (86.87%), Query Frame = 0


Query: 1   MKNPDPSPPRRKVKFAPKSTPRRKPPPTP--KTEDEDGDRNVAQTRYLLRRATENLGKRG 60
           MKN D SPPRRKVKFAPKS+ RR+PPP P  KTEDEDG+  VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NRVEKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVE 120
           N+VEKKSSVQVAFGPGA S+SSSIRTYG+PKV   S+KN+IEP+  +DEE + P+ MDV 
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVN 120

Query: 121 EDGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKL 180
           EDGK  DKK KDGIAE   +S++A+ TKT+++YKEPWDY +SYYPTTLP+RMPYSGD + 
Sbjct: 121 EDGKFFDKKTKDGIAE---SSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHER 180

Query: 181 LDEAEFRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEK 240
           LDEAEF QDA +REYDEN+ +PALDLGL +EN ENT+YFFQLP RLPLPKQSSTA GKEK
Sbjct: 181 LDEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEK 240

Query: 241 VGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHV 300
           VG+SRSSNST +S L DL+KL  GCMGKLLIYKSGAIKLRLGD LYDVSSGS+CSFLQHV
Sbjct: 241 VGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHV 300

Query: 301 VAINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           VAINTE+GQCCDLGDIGKRVVVTPDISSLLNS+ +
Sbjct: 301 VAINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTN 332

[Close]

BLAST of Tan0019135 vs. TAIR 10
Match: AT4G25180.1 (RNA polymerase III RPC4 )

HSP 1 Score: 166.0 bits (419), Expect = 5.1e-41
Identity = 128/336 (38.10%), Postives = 178/336 (52.98%), Query Frame = 0


Query: 5   DPSPPRRKVKFAPK-STPRRKPP--PTPKTEDEDGDRNVAQTRYLLRRATENLGKRGNRV 64
           D    + K +F P    P R+ P  PT  TE E+ + N+  +R   RR    +G+R    
Sbjct: 2   DSGEQKSKRRFQPNPPRPSRRLPIAPTSNTEAEEDEENIKASRQFDRRI---VGRRPKTE 61

Query: 65  EKKSSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDV---E 124
            K SS +VAF P  + S  +IR++G+PK      K N + + S    SI P    V   +
Sbjct: 62  TKASSPEVAFQP--SLSPLAIRSFGVPK---EDDKPNSDVNPS-SPASILPAVSSVTAAQ 121

Query: 125 EDGKPVDKKAKDGIAETSMASNAAIATKTRKNYKEPWDYHSSYYPTTLPMRMPYSGDPKL 184
           EDG+ V                    T+T  +Y EPWDY +SYYPT LP+R P SGD +L
Sbjct: 122 EDGEEVHN----------------FVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIEL 181

Query: 185 LDEAEFRQDATDREYDENAEVPALDLGLLE-ENVENTRYFFQLPVRLPLPKQSSTARGKE 244
           LD+ EF + A +R+YDEN    A +LGL   ++ +   + F++P  LP+ KQ++ A  K 
Sbjct: 182 LDQEEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTKR 241

Query: 245 KVGSSRSSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQH 304
            V       S+G S     E LP G MGK+L+YKSGA+KL++GD L+DVS G        
Sbjct: 242 SV----REYSSGIS--NPFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPND 301

Query: 305 VVAINTEEGQCCDLGDIGKRVVVTPDISSLLNSMAD 334
           VVAI+ +   C  +G   K V VTPD+ SLLN  +D
Sbjct: 302 VVAIDIKGRNCSRIGSSAKFVTVTPDVESLLNPASD 306

[Close]

BLAST of Tan0019135 vs. TAIR 10
Match: AT5G09380.1 (RNA polymerase III RPC4 )

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-39
Identity = 116/328 (35.37%), Postives = 164/328 (50.00%), Query Frame = 0


Query: 5   DPSPPRRKVKFAPKSTPRRKPPPTPKTEDEDGDRNVAQTRYLLRRATENLGKRGNRVEKK 64
           +  PP RK+KFAPK+ P+R P P  K E  + + N AQ   LLRR  E   ++    +K 
Sbjct: 2   EQKPPVRKMKFAPKAPPKRVPKPEVKPEVVEDNSNSAQASELLRRVNERSLRKPKADKKV 61

Query: 65  SSVQVAFGPGAASSSSSIRTYGLPKVGTSSKKNNIEPDDSDDEESIFPLPMDVEEDGKPV 124
            + QVA+  G  +S+ S +                                         
Sbjct: 62  PASQVAWLGGVVNSTRSNK----------------------------------------- 121

Query: 125 DKKAKDGIAETSMASNAAIATKTRK-NYKEPWDYHSSYYPTTLPMRMPYSGDPKLLDEAE 184
                      + ++ A  +T T++  YKEPWDY+ SYYP TLPMR PY+GDP++LD  E
Sbjct: 122 ---------YLNRSNGAYGSTSTQEIEYKEPWDYY-SYYPITLPMRRPYAGDPEVLDVEE 181

Query: 185 FRQDATDREYDENAEVPALDLGLLEENVENTRYFFQLPVRLPLPKQSSTARGKEKVGSSR 244
           F Q     E   N    A +LGL+E++ E   +F +LP    +P  S+     E   + +
Sbjct: 182 FMQAGGHHEDSLNT---AANLGLMEDSGEQKMFFMRLP---SVPLASTPTENLETRPNIK 241

Query: 245 SSNSTGTSALGDLEKLPGGCMGKLLIYKSGAIKLRLGDTLYDVSSGSNCSFLQHVVAINT 304
                 T    DL+ LP G MGKLL+YKSGA+K++LG+ LYDVS G    F Q V+ +NT
Sbjct: 242 GPVEKKTV---DLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNT 269

Query: 305 EEGQCCDLGDIGKRVVVTPDISSLLNSM 332
           E+  CC +GD+ K  V+TPDI S+L  +
Sbjct: 302 EQKNCCLVGDVYKHAVLTPDIDSILKDI 269

The following BLAST results are available for this feature:

BLAST of Tan0019135 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91WD1	7.3e-08	41.56	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d ...	[more]
P05423	1.2e-07	41.56	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D P...	[more]
Q5E9Z7	4.7e-07	38.14	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=...	[more]
Q8T1V7	1.5e-05	36.36	DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=4468...	[more]
O74857	2.9e-04	24.57	DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of Tan0019135 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879339.1	6.7e-144	80.48	DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]	[more]
XP_022141051.1	1.1e-141	78.74	DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Momordica charanti...	[more]
XP_022141050.1	2.7e-140	78.51	DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Momordica charanti...	[more]
KAA0044650.1	5.2e-136	76.72	DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]	[more]
XP_004146914.1	6.8e-136	76.42	DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus] >KGN53151.1 hypot...	[more]

BLAST of Tan0019135 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHV0	5.2e-142	78.74	DNA-directed RNA polymerase III subunit RPC4-like isoform X2 OS=Momordica charan...	[more]
A0A6J1CGV5	1.3e-140	78.51	DNA-directed RNA polymerase III subunit RPC4-like isoform X1 OS=Momordica charan...	[more]
A0A5A7TN83	2.5e-136	76.72	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0KZ61	3.3e-136	76.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1	[more]
A0A1S3BYJ9	1.2e-135	76.72	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of Tan0019135 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25180.1	5.1e-41	38.10	RNA polymerase III RPC4	[more]
AT5G09380.1	1.7e-39	35.37	RNA polymerase III RPC4	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 231..324 e-value: 4.4E-25 score: 88.8
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 1..333
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..133
None	No IPR available	PANTHER	PTHR13408:SF6	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-LIKE ISOFORM X1	coord: 1..333

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019135.1	Tan0019135.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome