Tan0019094 (gene) Snake gourd v1

Overview
NameTan0019094
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG11: 10341370 .. 10341624 (-)
RNA-Seq ExpressionTan0019094
SyntenyTan0019094
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTCAAAATCTTGCCGGAGGACAATCGAATCGCTGATTTTGCTCTGAACAAGCCGATGAATTCAGACACGGCGGCGGCGACGGCTATTGGGTGCAGAATCGGCGGCGGAAAAGTGAAATCTGTGATCCCGAAGAGAAGGACGCTGGTGAAGACGATGATTTATCACTGTATTAAGGACTTCCTTAAATCTCTCTTTTGCCACTCGTCAGAGATCCACAACCGTCCAAAACCCATCACTCAAAACTTGTAA

mRNA sequence

ATGCATTTCAAAATCTTGCCGGAGGACAATCGAATCGCTGATTTTGCTCTGAACAAGCCGATGAATTCAGACACGGCGGCGGCGACGGCTATTGGGTGCAGAATCGGCGGCGGAAAAGTGAAATCTGTGATCCCGAAGAGAAGGACGCTGGTGAAGACGATGATTTATCACTGTATTAAGGACTTCCTTAAATCTCTCTTTTGCCACTCGTCAGAGATCCACAACCGTCCAAAACCCATCACTCAAAACTTGTAA

Coding sequence (CDS)

ATGCATTTCAAAATCTTGCCGGAGGACAATCGAATCGCTGATTTTGCTCTGAACAAGCCGATGAATTCAGACACGGCGGCGGCGACGGCTATTGGGTGCAGAATCGGCGGCGGAAAAGTGAAATCTGTGATCCCGAAGAGAAGGACGCTGGTGAAGACGATGATTTATCACTGTATTAAGGACTTCCTTAAATCTCTCTTTTGCCACTCGTCAGAGATCCACAACCGTCCAAAACCCATCACTCAAAACTTGTAA

Protein sequence

MHFKILPEDNRIADFALNKPMNSDTAAATAIGCRIGGGKVKSVIPKRRTLVKTMIYHCIKDFLKSLFCHSSEIHNRPKPITQNL
Homology
BLAST of Tan0019094 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 1  MHFKILPEDNRIADFALNKPMNSDTAAATAIGCRIGGGKVKSVIPKRRTLVKTMIYHCIK 60
          MH  +LP  NR++D   +KP+ +    +  I  R+GG K+KSVIPK+R LVKTMIYH +K
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAA--FRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLK 60

Query: 61 DFLKSLFCHSSEIHNRPKPITQN 84
          DFL SLF  SS+IHNRPKPI+++
Sbjct: 61 DFLISLFRPSSDIHNRPKPISKD 81

BLAST of Tan0019094 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-12
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 20  PMNSDTA--AATAIGCRIGGGKVKSVIPKRRTLVKTMIYHCIKDFLKSLFCHSSEIHNRP 79
           P   +TA  +  ++G R G GKVKSVIPK+R LVKTM+YHCIK+F+KSLF    + HNRP
Sbjct: 97  PATPETAVTSTNSLGYRAGVGKVKSVIPKKRKLVKTMMYHCIKNFIKSLFRRPPKTHNRP 156

Query: 80  KPITQN 84
           KPIT +
Sbjct: 157 KPITDD 162

BLAST of Tan0019094 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 32  GCRIGGGKVKSVIPKRRTLVKTMIYHCIKDFLKSLFCHSSEIHNRPKPIT 82
           G R+G GK KSVIPKRR LVKTM+YHCIK+FLKSLF    E HNRPKPIT
Sbjct: 91  GYRVGIGKGKSVIPKRRKLVKTMMYHCIKNFLKSLFRRPPETHNRPKPIT 140

BLAST of Tan0019094 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 4.7e-09
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 20  PMNSDTA--AATAIGCRIGGGKVKSVIPKRRTLVKTMIYHCIKDFLKSLFCHSSEIH-NR 79
           P   DTA  +  ++  R G GKVKSVIPK+R LVKTM+YHCIKDFLKSLF    + H  R
Sbjct: 66  PAKPDTAVTSTNSVEYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPPPKTHRRR 125

Query: 80  PKPI 81
           PKPI
Sbjct: 126 PKPI 129

BLAST of Tan0019094 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-06
Identity = 39/80 (48.75%), Postives = 48/80 (60.00%), Query Frame = 0

Query: 1  MHFKILPEDNRI----------ADFALNKPMNSDTAAAT---AIGCRIGGGKVKSVIPKR 60
          M  ++ PE++R+           + A N P+     A T   AIG R  GGKVKSVIPKR
Sbjct: 1  MQIRVWPENDRVLLKPEPIADGTELAPNNPVMISEMAVTANGAIGSR-AGGKVKSVIPKR 60

Query: 61 RTLVKTMIYHCIKDFLKSLF 68
          R LVKTMIY+ IKDF+ SLF
Sbjct: 61 RILVKTMIYNFIKDFIISLF 79

BLAST of Tan0019094 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.5e-16
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 1  MHFKILPEDNRIADFALNKPMNSDTAAATAIGCRIGGGKVKSVIPKRRTLVKTMIYHCIK 60
          MH  +LP  NR++D   +KP+ +    +  I  R+GG K+KSVIPK+R LVKTMIYH +K
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAA--FRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLK 60

Query: 61 DFLKSLFCHSSEIHNRPKPITQNL 85
          DFL SLF  SS+IHNRPKPI+++L
Sbjct: 61 DFLISLFRPSSDIHNRPKPISKDL 82

BLAST of Tan0019094 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 39/80 (48.75%), Postives = 48/80 (60.00%), Query Frame = 0

Query: 1  MHFKILPEDNRI----------ADFALNKPMNSDTAAAT---AIGCRIGGGKVKSVIPKR 60
          M  ++ PE++R+           + A N P+     A T   AIG R  GGKVKSVIPKR
Sbjct: 1  MQIRVWPENDRVLLKPEPIADGTELAPNNPVMISEMAVTANGAIGSR-AGGKVKSVIPKR 60

Query: 61 RTLVKTMIYHCIKDFLKSLF 68
          R LVKTMIY+ IKDF+ SLF
Sbjct: 61 RILVKTMIYNFIKDFIISLF 79

BLAST of Tan0019094 vs. ExPASy TrEMBL
Match: A0A0A0KFQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-05
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0

Query: 1  MHFKILPEDNRIADFALNKPMNSDTAAATAIGCRIGGGKVKSVIPKRRTLVKTMIYHCIK 60
          M F++   +N++       P  S+TA         G G VKSVIPK+R LVK M+Y CIK
Sbjct: 1  MKFRVFSGNNQVI------PAKSETATIV----YGGAGNVKSVIPKKRRLVKRMMYDCIK 60

Query: 61 DFLKSLFCHSSEIHNRPKP 80
          +++KSLFC + ++     P
Sbjct: 61 EWIKSLFCPTPKLGGSTNP 69

BLAST of Tan0019094 vs. ExPASy TrEMBL
Match: A0A5D3D590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00190 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 1  MHFKILPEDNRIADFALNKPMNSDTAAATAIGCRIGGGKVKSVIPKRRTLVKTMIYHCIK 60
          M F++   +N +       P  + TA   AI  R G G +KSVIPK+R LVK M+Y CIK
Sbjct: 1  MKFRVFSANNPVV------PEKAQTALEPAIVYR-GAGNMKSVIPKKRKLVKRMMYDCIK 60

Query: 61 DFLKSLFCHSSEI 74
          +++KSLF  + E+
Sbjct: 61 EWIKSLFRPTPEL 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8647260.13.3e-1555.42hypothetical protein Csa_018328, partial [Cucumis sativus][more]
KAG6602131.17.7e-1259.09hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602132.11.7e-1176.00hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602134.14.7e-0960.94hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022141661.14.8e-0648.75uncharacterized protein LOC111011963 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0A0KDQ75.5e-1655.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A6J1CJW32.3e-0648.75uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0KFQ15.7e-0539.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1[more]
A0A5D3D5903.7e-0442.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0019094.1Tan0019094.1mRNA