Tan0019080 (gene) Snake gourd v1

Overview


Name	Tan0019080
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG07: 74092202 .. 74092539 (-)
RNA-Seq Expression	Tan0019080
Synteny	Tan0019080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACGTTGGAAATCCAACGTGGATATCTATCTTAGTCAGCACCCCCTCGTTTCTCTTTTTAAGGTCCTCCAAGACTTCTCATTTCTCTTCCATCGTCGACTGACAGAAAGCCGAGACCGTACTCCAAGACCGAGTCCATTTCTTCGTTTTTATTGGCCGGCGACTTCCGTACTTCGCCGGGAAGTTTGTTTATCGCCAGAAATTATGGAGTTTCTGATGGTCGGTTGCGTTGCAGTTACGGTCTGTACACTCTGACCGTATCTGGTTTCCTCGAGCGAAAGCGACTTTACTTGGCTGAGTTTCGAAGTTATTCCATATTCTGTTTAGAAAATTAG

mRNA sequence

ATGCCACGTTGGAAATCCAACGTGGATATCTATCTTAGTCAGCACCCCCTCGTTTCTCTTTTTAAGGTCCTCCAAGACTTCTCATTTCTCTTCCATCGTCGACTGACAGAAAGCCGAGACCGTACTCCAAGACCGAGTCCATTTCTTCTTTCTGATGGTCGGTTGCGTTGCAGTTACGGTCTGTACACTCTGACCGTATCTGGTTTCCTCGAGCGAAAGCGACTTTACTTGGCTGAGTTTCGAAGTTATTCCATATTCTGTTTAGAAAATTAG

Coding sequence (CDS)

ATGCCACGTTGGAAATCCAACGTGGATATCTATCTTAGTCAGCACCCCCTCGTTTCTCTTTTTAAGGTCCTCCAAGACTTCTCATTTCTCTTCCATCGTCGACTGACAGAAAGCCGAGACCGTACTCCAAGACCGAGTCCATTTCTTCTTTCTGATGGTCGGTTGCGTTGCAGTTACGGTCTGTACACTCTGACCGTATCTGGTTTCCTCGAGCGAAAGCGACTTTACTTGGCTGAGTTTCGAAGTTATTCCATATTCTGTTTAGAAAATTAG

Protein sequence

MPRWKSNVDIYLSQHPLVSLFKVLQDFSFLFHRRLTESRDRTPRPSPFLLSDGRLRCSYGLYTLTVSGFLERKRLYLAEFRSYSIFCLEN

Homology

[Close]

BLAST of Tan0019080 vs. NCBI nr
Match: KGN61696.1 (hypothetical protein Csa_006426 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 7.7e-18
Identity = 65/114 (57.02%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 1   MPRWKSNVDIYLSQHPLVSLF-KVLQDFSFLFHRRLTESRDRTPRPS---PFLLSDG--- 60
           MPR  S VDI  SQ  L  LF  V QDFSFLFHRRL +SR RT  P     F  S G   
Sbjct: 1   MPRRNSYVDINPSQPHLSFLFLNVFQDFSFLFHRRLKKSRARTQNPEFVLTFSFSSGDRP 60

Query: 61  -----------------RLRCSYGLYTLTVSGFLERKRLYLAEFRSYSIFCLEN 91
                            RLR  YGL TLTVSGFL+RKRLYLAEFRSYSIFCLEN
Sbjct: 61  NSPETLFLSRSYGVSYDRLRSRYGLSTLTVSGFLKRKRLYLAEFRSYSIFCLEN 114

[Close]

BLAST of Tan0019080 vs. ExPASy TrEMBL
Match: A0A0A0LNW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G225350 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.7e-18
Identity = 65/114 (57.02%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 1   MPRWKSNVDIYLSQHPLVSLF-KVLQDFSFLFHRRLTESRDRTPRPS---PFLLSDG--- 60
           MPR  S VDI  SQ  L  LF  V QDFSFLFHRRL +SR RT  P     F  S G   
Sbjct: 1   MPRRNSYVDINPSQPHLSFLFLNVFQDFSFLFHRRLKKSRARTQNPEFVLTFSFSSGDRP 60

Query: 61  -----------------RLRCSYGLYTLTVSGFLERKRLYLAEFRSYSIFCLEN 91
                            RLR  YGL TLTVSGFL+RKRLYLAEFRSYSIFCLEN
Sbjct: 61  NSPETLFLSRSYGVSYDRLRSRYGLSTLTVSGFLKRKRLYLAEFRSYSIFCLEN 114

The following BLAST results are available for this feature:

BLAST of Tan0019080 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61696.1	7.7e-18	57.02	hypothetical protein Csa_006426 [Cucumis sativus]	[more]

BLAST of Tan0019080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNW3	3.7e-18	57.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G225350 PE=4 SV=1	[more]

BLAST of Tan0019080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019080.1	Tan0019080.1	mRNA