Tan0019037 (gene) Snake gourd v1

Overview


Name	Tan0019037
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribosomal protein-like protein
Location	LG04: 88290496 .. 88291425 (-)
RNA-Seq Expression	Tan0019037
Synteny	Tan0019037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTATGTTTTCGTACTTTCTCCCCTTGGCCATCATCTCAAAATCGAAAGAGCTTCTTTGTTGTCCCAGTTTTGAGCTGCAATGGGGGAATCACATTCATCACCGCCCCCAAATTCTCTTCCCCAAGACAACAGTACCGCAACCCCAATGACGTCTTCAGGAACCCAAAGAAGAAAGCTTCCTTCCCCACAGGAACTCGTATCCCACTACGTATCCCAAGGCCTTAGTTCTCATGATGCTTCAATCAAGGTAATAGAAGACCTTCAGAATGCTCTCGTTAGAATTATCTCTTCCGGCAGAGGTAAAAAGGACAAGCTTCTGGTCGAGACCTCGAGGAAGATCGATGCCACTAATAACCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCGGGCTATGCCGAGACTTTTGCCCTAGGCTTGGCTTCTGGGTCTGTTCTGAATGGGATTGGTACTATGATGCCCCATGTTTTTGGGGCTCTCACCCATATTTGGAGCTCTGTTAGTGATCTAACCAAGCATTCTTCTTGAATTTGAAAGAACACCAGTCTTCGTTTTTGTGGTTTGTTTTCCTTTTAGTTGTCAGGAATTTTCAGGTGTTTAGTAATAGTTGTTCTCCGATCGATTCTGACTAGATACTCAGAAAATGCTAATATTTTATCTATGCTTTTTTTTTTTCGGGAGAAGCTCCTGGTTACTGCTCCAGTTATGGGAACTTTCCTTCTTTTCTCTTTCGTGGGATGGGGTGTGGGAATGGGATTTCATGATTGACATTTCACTTGGATCAATGATTTTCTACTTTTATCGAAGGTTCTTTCTCCTGCATTAGAAGTTAATAAAGGTAAATTAAAAAAAATTAAAAAGAATGTCGAAATCAAATATTGCGGCATCAAGGGGAATCTCCTTTCTTGGTTATTATTTAGTCT

mRNA sequence

CTTTTATGTTTTCGTACTTTCTCCCCTTGGCCATCATCTCAAAATCGAAAGAGCTTCTTTGTTGTCCCAGTTTTGAGCTGCAATGGGGGAATCACATTCATCACCGCCCCCAAATTCTCTTCCCCAAGACAACAGTACCGCAACCCCAATGACGTCTTCAGGAACCCAAAGAAGAAAGCTTCCTTCCCCACAGGAACTCGTATCCCACTACGTATCCCAAGGCCTTAGTTCTCATGATGCTTCAATCAAGGTAATAGAAGACCTTCAGAATGCTCTCGTTAGAATTATCTCTTCCGGCAGAGGTAAAAAGGACAAGCTTCTGGTCGAGACCTCGAGGAAGATCGATGCCACTAATAACCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCGGGCTATGCCGAGACTTTTGCCCTAGGCTTGGCTTCTGGGTCTGTTCTGAATGGGATTGGTACTATGATGCCCCATGTTTTTGGGGCTCTCACCCATATTTGGAGCTCTGTTAGTGATCTAACCAAGCATTCTTCTTGAATTTGAAAGAACACCAGTCTTCGTTTTTGTGGTTTGTTTTCCTTTTAGTTGTCAGGAATTTTCAGGTGTTTAGTAATAGTTGTTCTCCGATCGATTCTGACTAGATACTCAGAAAATGCTAATATTTTATCTATGCTTTTTTTTTTTCGGGAGAAGCTCCTGGTTACTGCTCCAGTTATGGGAACTTTCCTTCTTTTCTCTTTCGTGGGATGGGGTGTGGGAATGGGATTTCATGATTGACATTTCACTTGGATCAATGATTTTCTACTTTTATCGAAGGTTCTTTCTCCTGCATTAGAAGTTAATAAAGGTAAATTAAAAAAAATTAAAAAGAATGTCGAAATCAAATATTGCGGCATCAAGGGGAATCTCCTTTCTTGGTTATTATTTAGTCT

Coding sequence (CDS)

ATGGGGGAATCACATTCATCACCGCCCCCAAATTCTCTTCCCCAAGACAACAGTACCGCAACCCCAATGACGTCTTCAGGAACCCAAAGAAGAAAGCTTCCTTCCCCACAGGAACTCGTATCCCACTACGTATCCCAAGGCCTTAGTTCTCATGATGCTTCAATCAAGGTAATAGAAGACCTTCAGAATGCTCTCGTTAGAATTATCTCTTCCGGCAGAGGTAAAAAGGACAAGCTTCTGGTCGAGACCTCGAGGAAGATCGATGCCACTAATAACCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCGGGCTATGCCGAGACTTTTGCCCTAGGCTTGGCTTCTGGGTCTGTTCTGAATGGGATTGGTACTATGATGCCCCATGTTTTTGGGGCTCTCACCCATATTTGGAGCTCTGTTAGTGATCTAACCAAGCATTCTTCTTGA

Protein sequence

MGESHSSPPPNSLPQDNSTATPMTSSGTQRRKLPSPQELVSHYVSQGLSSHDASIKVIEDLQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGSVLNGIGTMMPHVFGALTHIWSSVSDLTKHSS

Homology

[Close]

BLAST of Tan0019037 vs. NCBI nr
Match: XP_038893730.1 (uncharacterized protein LOC120082569 [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 6.7e-67
Identity = 137/150 (91.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSSGTQRRKLPSPQELVSHYVSQGLSSHDASIKVIED 60
           MGESHSS PPNSLPQDNSTA PMTSSGT+RRK PSPQEL+SHY SQGL+SHDASIKVIED
Sbjct: 1   MGESHSSAPPNSLPQDNSTANPMTSSGTRRRKPPSPQELISHYESQGLTSHDASIKVIED 60

Query: 61  LQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGSV 120
           LQNAL RIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAE+FALGLASGSV
Sbjct: 61  LQNALFRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAESFALGLASGSV 120

Query: 121 LNGIGTMMPHVFGALTHIWSSVSDLTKHSS 151
           L+GIGT+MPHVFGALT+IWSSVS+LTKHSS
Sbjct: 121 LSGIGTVMPHVFGALTNIWSSVSNLTKHSS 150

[Close]

BLAST of Tan0019037 vs. NCBI nr
Match: XP_022980748.1 (uncharacterized protein LOC111480022 [Cucurbita maxima])

HSP 1 Score: 246.1 bits (627), Expect = 1.9e-61
Identity = 129/150 (86.00%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSSGTQRRKLPSPQELVSHYVSQGLSSHDASIKVIED 60
           M +S+S    NSLPQDN+TATPM SSG QRRKLPSPQELVSHY SQGL+SHDASIKVIED
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGAQRRKLPSPQELVSHYESQGLTSHDASIKVIED 60

Query: 61  LQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGSV 120
           LQNALVRIISSGRGKKDKLLV+TSRKIDATN RLAILDLKLDSKPGYA+TFALGLASGSV
Sbjct: 61  LQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSV 120

Query: 121 LNGIGTMMPHVFGALTHIWSSVSDLTKHSS 151
           LNGIG +MPHVFGAL +IWSSVS  TKHSS
Sbjct: 121 LNGIGAVMPHVFGALANIWSSVSKFTKHSS 150

[Close]

BLAST of Tan0019037 vs. NCBI nr
Match: XP_022955496.1 (uncharacterized protein LOC111457504 [Cucurbita moschata])

HSP 1 Score: 240.7 bits (613), Expect = 7.9e-60
Identity = 128/151 (84.77%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSS-GTQRRKLPSPQELVSHYVSQGLSSHDASIKVIE 60
           M +S+S    NSLPQDN+TATPM SS G QRRKLPSPQELVSHY SQGL+SHDASIKVIE
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60

Query: 61  DLQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGS 120
           DLQNALVRIISSGRGKKDKLLV+TSRKIDATN RLAILDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120

Query: 121 VLNGIGTMMPHVFGALTHIWSSVSDLTKHSS 151
           VLNGIG +MPHVFGA+ +IWSSVS  TKHSS
Sbjct: 121 VLNGIGAVMPHVFGAIANIWSSVSKFTKHSS 151

[Close]

BLAST of Tan0019037 vs. NCBI nr
Match: XP_022148109.1 (uncharacterized protein LOC111016865 [Momordica charantia])

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 126/150 (84.00%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSSGTQRRKLPSPQELVSHYVSQGLSSHDASIKVIED 60
           MGE  S P PNSLPQ NSTATPM+SSGTQRRKLP+PQELVSHY SQGL+SHDASIKVIED
Sbjct: 1   MGE--SPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIED 60

Query: 61  LQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGSV 120
           LQNAL RI+SSGRGKKDKLLVETS+KIDAT +R+AILDLKLDSKPGYAETFA+GLASGSV
Sbjct: 61  LQNALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSV 120

Query: 121 LNGIGTMMPHVFGALTHIWSSVSDLTKHSS 151
           L G+G++MPHVFGAL +IWSSVS+ TKHSS
Sbjct: 121 LKGVGSVMPHVFGALANIWSSVSNATKHSS 148

[Close]

BLAST of Tan0019037 vs. NCBI nr
Match: XP_023527033.1 (uncharacterized protein LOC111790380 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 5.1e-59
Identity = 128/151 (84.77%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSS-GTQRRKLPSPQELVSHYVSQGLSSHDASIKVIE 60
           M +S+S    NSL QDN+TATPM SS G QRRKLPSPQELVSHY SQGL+SHDASIKVIE
Sbjct: 1   MADSNSPATQNSLHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60

Query: 61  DLQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGS 120
           DLQNALVRIISSGRGKKDKLLV+TSRKIDATN RLAILDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120

Query: 121 VLNGIGTMMPHVFGALTHIWSSVSDLTKHSS 151
           VLNGIG +MPHVFGAL +IWSSVS  TKHSS
Sbjct: 121 VLNGIGAVMPHVFGALANIWSSVSKFTKHSS 151

[Close]

BLAST of Tan0019037 vs. ExPASy TrEMBL
Match: A0A6J1J075 (uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.1e-62
Identity = 129/150 (86.00%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSSGTQRRKLPSPQELVSHYVSQGLSSHDASIKVIED 60
           M +S+S    NSLPQDN+TATPM SSG QRRKLPSPQELVSHY SQGL+SHDASIKVIED
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGAQRRKLPSPQELVSHYESQGLTSHDASIKVIED 60

Query: 61  LQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGSV 120
           LQNALVRIISSGRGKKDKLLV+TSRKIDATN RLAILDLKLDSKPGYA+TFALGLASGSV
Sbjct: 61  LQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSV 120

Query: 121 LNGIGTMMPHVFGALTHIWSSVSDLTKHSS 151
           LNGIG +MPHVFGAL +IWSSVS  TKHSS
Sbjct: 121 LNGIGAVMPHVFGALANIWSSVSKFTKHSS 150

[Close]

BLAST of Tan0019037 vs. ExPASy TrEMBL
Match: A0A6J1GTX5 (uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC111457504 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60
Identity = 128/151 (84.77%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSS-GTQRRKLPSPQELVSHYVSQGLSSHDASIKVIE 60
           M +S+S    NSLPQDN+TATPM SS G QRRKLPSPQELVSHY SQGL+SHDASIKVIE
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60

Query: 61  DLQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGS 120
           DLQNALVRIISSGRGKKDKLLV+TSRKIDATN RLAILDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120

Query: 121 VLNGIGTMMPHVFGALTHIWSSVSDLTKHSS 151
           VLNGIG +MPHVFGA+ +IWSSVS  TKHSS
Sbjct: 121 VLNGIGAVMPHVFGAIANIWSSVSKFTKHSS 151

[Close]

BLAST of Tan0019037 vs. ExPASy TrEMBL
Match: A0A6J1D308 (uncharacterized protein LOC111016865 OS=Momordica charantia OX=3673 GN=LOC111016865 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.5e-60
Identity = 126/150 (84.00%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSSGTQRRKLPSPQELVSHYVSQGLSSHDASIKVIED 60
           MGE  S P PNSLPQ NSTATPM+SSGTQRRKLP+PQELVSHY SQGL+SHDASIKVIED
Sbjct: 1   MGE--SPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIED 60

Query: 61  LQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGSV 120
           LQNAL RI+SSGRGKKDKLLVETS+KIDAT +R+AILDLKLDSKPGYAETFA+GLASGSV
Sbjct: 61  LQNALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSV 120

Query: 121 LNGIGTMMPHVFGALTHIWSSVSDLTKHSS 151
           L G+G++MPHVFGAL +IWSSVS+ TKHSS
Sbjct: 121 LKGVGSVMPHVFGALANIWSSVSNATKHSS 148

[Close]

BLAST of Tan0019037 vs. ExPASy TrEMBL
Match: A0A5A7VAF7 (Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00060 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 9.2e-54
Identity = 116/149 (77.85%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSSGTQRRKLPSPQELVSHYVSQGLSSHDASIKVIED 60
           M +S S  PPNSLPQ     +P   S   RRK PSPQEL+SHY SQG +SHDASIKVI+D
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRS---RRKPPSPQELISHYESQGHTSHDASIKVIDD 60

Query: 61  LQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGSV 120
           LQNAL +IISSGRGKKDKLL+ETSRKIDATN+RLA+LDLKLDSKPGYAETFALGLASGSV
Sbjct: 61  LQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSV 120

Query: 121 LNGIGTMMPHVFGALTHIWSSVSDLTKHS 150
           LNG+GT+MPHVFGALT+IWSSV++LTKHS
Sbjct: 121 LNGLGTVMPHVFGALTNIWSSVTNLTKHS 146

[Close]

BLAST of Tan0019037 vs. ExPASy TrEMBL
Match: A0A1S4DV46 (uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 9.2e-54
Identity = 116/149 (77.85%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 1   MGESHSSPPPNSLPQDNSTATPMTSSGTQRRKLPSPQELVSHYVSQGLSSHDASIKVIED 60
           M +S S  PPNSLPQ     +P   S   RRK PSPQEL+SHY SQG +SHDASIKVI+D
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRS---RRKPPSPQELISHYESQGHTSHDASIKVIDD 60

Query: 61  LQNALVRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGSV 120
           LQNAL +IISSGRGKKDKLL+ETSRKIDATN+RLA+LDLKLDSKPGYAETFALGLASGSV
Sbjct: 61  LQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSV 120

Query: 121 LNGIGTMMPHVFGALTHIWSSVSDLTKHS 150
           LNG+GT+MPHVFGALT+IWSSV++LTKHS
Sbjct: 121 LNGLGTVMPHVFGALTNIWSSVTNLTKHS 146

[Close]

BLAST of Tan0019037 vs. TAIR 10
Match: AT1G16790.1 (ribosomal protein-related )

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-31
Identity = 73/136 (53.68%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 17  NSTATPMTSSGTQRRKLPSPQELVSHYVSQGLSSHDASIKVIEDLQNALVRIISSGR--G 76
           N+     +    + +K P+P EL+SHY  +GL   +ASIKVIEDLQNALVR++SS R   
Sbjct: 8   NAAEETKSEQKQKSKKFPTPTELISHYQKRGLEPAEASIKVIEDLQNALVRVVSSSRNAS 67

Query: 77  KKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAETFALGLASGSVLNGIGTMMPHVFGA 136
            KDKL+ + +RKIDA N RLA++D KL++KPGY ETFALGLASG+ LNGI  + PHV   
Sbjct: 68  SKDKLVTD-ARKIDAINGRLAVVDAKLETKPGYVETFALGLASGATLNGISAVWPHVTRG 127

Query: 137 LTHIWSSVSDLTKHSS 151
           +  IWS+V   T  SS
Sbjct: 128 IGQIWSAVRIGTDPSS 142

The following BLAST results are available for this feature:

BLAST of Tan0019037 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019037 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893730.1	6.7e-67	91.33	uncharacterized protein LOC120082569 [Benincasa hispida]	[more]
XP_022980748.1	1.9e-61	86.00	uncharacterized protein LOC111480022 [Cucurbita maxima]	[more]
XP_022955496.1	7.9e-60	84.77	uncharacterized protein LOC111457504 [Cucurbita moschata]	[more]
XP_022148109.1	1.8e-59	84.00	uncharacterized protein LOC111016865 [Momordica charantia]	[more]
XP_023527033.1	5.1e-59	84.77	uncharacterized protein LOC111790380 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0019037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J075	9.1e-62	86.00	uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022...	[more]
A0A6J1GTX5	3.8e-60	84.77	uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC1114575...	[more]
A0A6J1D308	8.5e-60	84.00	uncharacterized protein LOC111016865 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A5A7VAF7	9.2e-54	77.85	Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4DV46	9.2e-54	77.85	uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=...	[more]

BLAST of Tan0019037 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16790.1	1.3e-31	53.68	ribosomal protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019037.1	Tan0019037.1	mRNA