Tan0018987 (gene) Snake gourd v1

Overview


Name	Tan0018987
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	HMG-Y-related protein A-like
Location	LG04: 73536068 .. 73538058 (-)
RNA-Seq Expression	Tan0018987
Synteny	Tan0018987

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAGAAATTTCTCAAAATCCTTTTTTGCAAATCTGTGCTCAAATCAAACAGTTACAGGCAAATTTTTTTTGAACAGCAGAGAAGTAGGTTCCTCTCTCTATCTCTAGCTGCTTTCTGGGTTACTCTTCTCTTCTTTGTAGGCTTCAGGGAAATAAAAGCTTTCTTTTTCAAATTTCAATGGCGGCTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCGTTTCCTCTTTCTCTCTTCCAATTTCAGATACCCATCAAGGAAAAATCATGATTTCTTCTTCATTTTGCTGATTTTTTATCTTAACTCTTCATTGCCTTCGACCTACTGCATCTAGTTTGTTAGTCTGATTCTGGGTTTGTGTGTGTTGCGTGTTAATTTCTTCTTGAATTAGGGTTCCTTGCGATTTGTTTCTCATTTTGTGTCCTGTTTAGTGAATTTTGTTTTTTGTTTGTTTTTTTTTGTTCTGTTGTGATTTGATGAACGGGGGAAAATTGTTCTTTCGTTGTGTTTTCTTGCATTTCCATCTTGAATCTGAGTGTTTCTTTTTTAAAAAAAATTCGAAGGTTTTTTTGTTTTGTTTTTTTTTTGTTTCAAGAGACACTGATGTTTGATTGATTCAGCTGAGATTCCTCATTTCTTTAGTTCCTGTCAGAATCTTCTTTGTTAGATGCAATTTTTGAAGAGAGATAAATGTACTTCTTGTGTACTCCAGCTTCCTTAATAATTTGTTTCCATTATGAAATGATTTTGAGTTTTGGATTTTGTTTGAAATGAGAAGAGATTTGAGATGAATGTGATTAAAATTTTTGCTGGGTTTTTGAAAATGAGAAGATTATAGAAGATTTGTAGATGGTAGATCTGTTGTTAACTGTGAGGTAACGTAAAATCTTAAGTGCAAATATGATTTGAAATTACATTTGATTTCAGATCCTTTTACTCTAAAAAGTTAACAAACAAAACAAGTTTATTTGAAATGTATTTTGATTGGTTATTAAGTTTCTTTCTAGATCTGCAAATCATTGAAGCTGATAAAAGTGGATCATGAAAGGAAAAAGGTTGAATTGAAACACCATTCTTGATGGAGATGTTTTAAATATTGCAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCAACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACAGCGGCTCCCCGGCGGGGGCGTGGCAGGCCTCCGAAACCGAAGGCGCCCCTGCCACTGGGTGCTGTTTTATCCCCACCAAAGCCAAGAGGCCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGAAGATGAAAGTATCTTCTGGGACAGGGAAACCAAGAGGACGACCGAGGAAATTGCCTCGGCCAGCGACCACGACAGCTCCTCCAGCACCGAGTGGGAGGCCAAGAGGTCGACCTCCTAAGGTGAAGGCTCCATTGACCGAAGTTAGCGTTCATCAATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTGACTCTCTCTCTCTCTCTGTCTCTTATCTCTCTCTCTCTCTGTTGCTGTGTGAGCAGTTGTAGTTGTAGTGCTAGTTTTAGTTTGATGTGGGTGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTCACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTTAGTGTTTCAATCCTTTAAAGATCTTTCATTTCTTCAAACATGACACATCAGATTAGTTGTTCTTCCCATGGGAAATCGGACATAAGTTGAGCTAGATAATTCAGAGTCGTGGGGAGAATGAGTTCAAATCTCACCTCATCTACCTAGG

mRNA sequence

GAAAAAGAAATTTCTCAAAATCCTTTTTTGCAAATCTGTGCTCAAATCAAACAGTTACAGGCAAATTTTTTTTGAACAGCAGAGAAGTAGGTTCCTCTCTCTATCTCTAGCTGCTTTCTGGGTTACTCTTCTCTTCTTTGTAGGCTTCAGGGAAATAAAAGCTTTCTTTTTCAAATTTCAATGGCGGCTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCAACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACAGCGGCTCCCCGGCGGGGGCGTGGCAGGCCTCCGAAACCGAAGGCGCCCCTGCCACTGGGTGCTGTTTTATCCCCACCAAAGCCAAGAGGCCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGAAGATGAAAGTATCTTCTGGGACAGGGAAACCAAGAGGACGACCGAGGAAATTGCCTCGGCCAGCGACCACGACAGCTCCTCCAGCACCGAGTGGGAGGCCAAGAGGTCGACCTCCTAAGGTGAAGGCTCCATTGACCGAAGTTAGCGTTCATCAATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTGACTCTCTCTCTCTCTCTGTCTCTTATCTCTCTCTCTCTCTGTTGCTGTGTGAGCAGTTGTAGTTGTAGTGCTAGTTTTAGTTTGATGTGGGTGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTCACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTTAGTGTTTCAATCCTTTAAAGATCTTTCATTTCTTCAAACATGACACATCAGATTAGTTGTTCTTCCCATGGGAAATCGGACATAAGTTGAGCTAGATAATTCAGAGTCGTGGGGAGAATGAGTTCAAATCTCACCTCATCTACCTAGG

Coding sequence (CDS)

ATGGCGGCTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCAACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACAGCGGCTCCCCGGCGGGGGCGTGGCAGGCCTCCGAAACCGAAGGCGCCCCTGCCACTGGGTGCTGTTTTATCCCCACCAAAGCCAAGAGGCCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGAAGATGAAAGTATCTTCTGGGACAGGGAAACCAAGAGGACGACCGAGGAAATTGCCTCGGCCAGCGACCACGACAGCTCCTCCAGCACCGAGTGGGAGGCCAAGAGGTCGACCTCCTAAGGTGAAGGCTCCATTGACCGAAGTTAGCGTTCATCAATAG

Protein sequence

MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNAPPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVSVHQ

Homology

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BLAST of Tan0018987 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-57
Identity = 124/179 (69.27%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           N MK SGEL F +NNYMK DP A P+RGRGRPPKPK PLP G V+SPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPA-PSGRPRGRPPKVKAPLTEVSV 179
           PPK P   K K + G+G+PRGRP+K+PR     AP A  SGRPRGRPPKVK  LTEVSV
Sbjct: 121 PPKSP---KAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSV 174

[Close]

BLAST of Tan0018987 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.5e-44
Identity = 103/155 (66.45%), Postives = 116/155 (74.84%), Query Frame = 0


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAA 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SGEL F +NNYMK DP A 
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNAPPKPPKPVKMKVSSGTGKPRGRPR 144
           P+RGRGRPPKPK PLP G V+SPP+PRGRPPKDPNAPPK P   K K +  TG+PRGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSP---KAKATPATGRPRGRPK 120

Query: 145 KLPRPATTTAPPAPS-GRPRGRPPKVKAPLTEVSV 179
           K+ R     +P A S GRPRGRPPKVK  LTEVSV
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSV 150

[Close]

BLAST of Tan0018987 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.2e-34
Identity = 94/178 (52.81%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAAPRRGRGRPPKPK---------APLPLGAVLS--PPKPRGRPPKDPN 130
             KNNYMK DP A P+RGRGRPPK K         A +    V+S  PP+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPKPVKMKVSSGTGKPRGRPRKLPR-PATTTAPPAPSG------RPRGRPPKVK 171
            P  P +P + KV +G+G+PRGRP K PR  + T A P P+       R RGRPPKVK
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of Tan0018987 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 94/187 (50.27%), Postives = 112/187 (59.89%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGELVFWKNNYMKRD-PTAAPRRGRGRPPK---PKAPLPL-GAVLSPPKPRGRPP 120
             MK SGELVF KNNY +   P A P+RGRGRPPK   P AP P   +  S  + RGRPP
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGRPP 120

Query: 121 KDPNAPPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAP-----PAPSG-------RPR 171
           K       P +    + ++G  KPRGRP K  +     +P     PAP+G       R R
Sbjct: 121 K----AKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGR 180

[Close]

BLAST of Tan0018987 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo] >KAG6581188.1 hypothetical protein SDJN03_21190, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017928.1 hypothetical protein SDJN02_19794 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.4 bits (825), Expect = 2.5e-84
Identity = 168/183 (91.80%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTA PRRGRGRPPK K PLP G+VLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVS 180
              PPKPPKPV+MKVSSGTGKPRGRPRK PRPAT  APP PSGRPRGRPPKVK PLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of Tan0018987 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa] >TYK23933.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 320.9 bits (821), Expect = 7.2e-84
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTA PRRGRGRPPK K+PLPL + +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVSVHQ 180
           PPKPPKPV+MKVSSGTGKPRGRPRK P+ ATT APPAPSGRPRGRPPKVKA LTEVSV Q
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of Tan0018987 vs. NCBI nr
Match: XP_004145857.1 (HMG-Y-related protein A isoform X2 [Cucumis sativus])

HSP 1 Score: 317.8 bits (813), Expect = 6.1e-83
Identity = 162/180 (90.00%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTA PRRGRGRPPK K+PLPL +V+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVSVHQ 180
           PPKPPKPV+MKVSSGTGKPRGRPRK P+ A+T APPAPSGRPRGRPPKVKA LTEVSV Q
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of Tan0018987 vs. NCBI nr
Match: XP_022143283.1 (HMG-Y-related protein A-like [Momordica charantia])

HSP 1 Score: 313.9 bits (803), Expect = 8.8e-82
Identity = 161/180 (89.44%), Postives = 163/180 (90.56%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATGGVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTA PRRGRGRPPKPK PLP     SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVSVHQ 180
           PP+PPKPV MKVSSGTGKPRGRPRKL RP + TAPPAPSGRPRGRPPK KAPLTEV V Q
Sbjct: 121 PPQPPKPVTMKVSSGTGKPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 180

[Close]

BLAST of Tan0018987 vs. NCBI nr
Match: XP_038878302.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 311.6 bits (797), Expect = 4.4e-81
Identity = 160/180 (88.89%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMIFRAIEALNS+NGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSENGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTA PRRGRGRPPKPK PLP  +VLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVSVHQ 180
           PPKPPKPV+MKVSSGTGK RGRPRK P   T  +PP PSGRPRGRPPKVK  LTEVSV Q
Sbjct: 121 PPKPPKPVQMKVSSGTGKARGRPRKFPLATTMPSPPTPSGRPRGRPPKVKTSLTEVSVQQ 180

[Close]

BLAST of Tan0018987 vs. ExPASy TrEMBL
Match: A0A6J1J6G8 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 168/183 (91.80%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTA PRRGRGRPPK K PLP G+VLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVS 180
              PPKPPKPV+MKVSSGTGKPRGRPRK PRPAT  APP PSGRPRGRPPKVK PLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of Tan0018987 vs. ExPASy TrEMBL
Match: A0A6J1F494 (HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 168/183 (91.80%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTA PRRGRGRPPK K PLP G+VLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVS 180
              PPKPPKPV+MKVSSGTGKPRGRPRK PRPAT  APP PSGRPRGRPPKVK PLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of Tan0018987 vs. ExPASy TrEMBL
Match: A0A5D3DJY3 (HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00090 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.5e-84
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTA PRRGRGRPPK K+PLPL + +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVSVHQ 180
           PPKPPKPV+MKVSSGTGKPRGRPRK P+ ATT APPAPSGRPRGRPPKVKA LTEVSV Q
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of Tan0018987 vs. ExPASy TrEMBL
Match: A0A1S3C432 (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.5e-84
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTA PRRGRGRPPK K+PLPL + +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVSVHQ 180
           PPKPPKPV+MKVSSGTGKPRGRPRK P+ ATT APPAPSGRPRGRPPKVKA LTEVSV Q
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of Tan0018987 vs. ExPASy TrEMBL
Match: A0A0A0LCH9 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.0e-83
Identity = 162/180 (90.00%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAAPRRGRGRPPKPKAPLPLGAVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTA PRRGRGRPPK K+PLPL +V+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSGTGKPRGRPRKLPRPATTTAPPAPSGRPRGRPPKVKAPLTEVSVHQ 180
           PPKPPKPV+MKVSSGTGKPRGRPRK P+ A+T APPAPSGRPRGRPPKVKA LTEVSV Q
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of Tan0018987 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-35
Identity = 94/178 (52.81%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAAPRRGRGRPPKPK---------APLPLGAVLS--PPKPRGRPPKDPN 130
             KNNYMK DP A P+RGRGRPPK K         A +    V+S  PP+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPKPVKMKVSSGTGKPRGRPRKLPR-PATTTAPPAPSG------RPRGRPPKVK 171
            P  P +P + KV +G+G+PRGRP K PR  + T A P P+       R RGRPPKVK
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of Tan0018987 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-12
Identity = 73/215 (33.95%), Postives = 94/215 (43.72%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           S PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL  +K SG LV
Sbjct: 74  SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133

Query: 71  FWKNNYMKR-------------------------------DPTAAP------RRGRGRPP 130
             K +Y                                  DP  A       +RGRGRPP
Sbjct: 134 MVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPP 193

Query: 131 KPK----APLPL--------GAVLSPPKPRGRPPKDPNAPPKPPKPVKMKVSSGTGKPRG 172
           K K     P PL         + L   +P     + P  P +P +PVK        +P G
Sbjct: 194 KAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVK--------RPPG 253

[Close]

BLAST of Tan0018987 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 65.5 bits (158), Expect = 5.1e-11
Identity = 72/210 (34.29%), Postives = 91/210 (43.33%), Query Frame = 0


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNY---------------------------------MKRDPTAAP------RRGRGRPP 132
           K +Y                                    DP A+       +RGRGRPP
Sbjct: 126 KKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPP 185

Query: 133 KPK---APLPLGAVLSPPKPRGRPPKDP---NAPPKPPKPVKMKVSSGTGKPRGRPRKLP 172
           KPK    P PL  +  PP  + +    P       + P PV   V+    +  GRPRK  
Sbjct: 186 KPKPESQPQPLQQL--PPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRKNG 245

[Close]

BLAST of Tan0018987 vs. TAIR 10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-08
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGELVFWKNN 76
             E++   NN
Sbjct: 109 KREILCDCNN 118

The following BLAST results are available for this feature:

BLAST of Tan0018987 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	1.6e-57	69.27	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q10370	4.5e-44	66.45	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	3.2e-34	52.81	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q9FYS5	1.6e-30	50.27	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

BLAST of Tan0018987 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935331.1	2.5e-84	91.80	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]
XP_008456999.1	7.2e-84	90.56	PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-relat...	[more]
XP_004145857.1	6.1e-83	90.00	HMG-Y-related protein A isoform X2 [Cucumis sativus]	[more]
XP_022143283.1	8.8e-82	89.44	HMG-Y-related protein A-like [Momordica charantia]	[more]
XP_038878302.1	4.4e-81	88.89	HMG-Y-related protein A-like [Benincasa hispida]	[more]

BLAST of Tan0018987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6G8	1.2e-84	91.80	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV...	[more]
A0A6J1F494	1.2e-84	91.80	HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 ...	[more]
A0A5D3DJY3	3.5e-84	90.56	HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C432	3.5e-84	90.56	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
A0A0A0LCH9	3.0e-83	90.00	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV...	[more]

BLAST of Tan0018987 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	2.3e-35	52.81	high mobility group A	[more]
AT1G48620.1	2.7e-12	33.95	high mobility group A5	[more]
AT3G18035.1	5.1e-11	34.29	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	1.8e-08	40.00	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 86..96 score: 69.32 coord: 158..168 score: 68.56 coord: 106..117 score: 61.46
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 137..149 e-value: 50.0 score: 5.7 coord: 160..172 e-value: 2.4 score: 13.2 coord: 86..98 e-value: 97.0 score: 4.1 coord: 108..120 e-value: 0.79 score: 15.8
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 149..168 score: 43.57 coord: 106..118 score: 43.96 coord: 135..146 score: 33.33
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 e-value: 2.5E-22 score: 90.2
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 e-value: 9.9E-10 score: 38.6
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 11..80 score: 21.777845
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 7..133 e-value: 7.1E-14 score: 53.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..180
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..175
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..175
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 8..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018987.1	Tan0018987.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding