Tan0018970 (gene) Snake gourd v1

Overview
NameTan0018970
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG01: 3676540 .. 3678150 (+)
RNA-Seq ExpressionTan0018970
SyntenyTan0018970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTGTTCTTTAAAATATTAGGGTTATTTGATTTAATTTGCTCAAAAATGACTTCTCCCAAGAGATCAACTTCTTTCATTTGGCAACTGGTGTTGGTTTTAATGGCTATTCTAGCTTACAATGTTGCAGCAAGGAATTTGGCTTCTGCACCTCAAACAGCTTGTAAGTGGATATCCTGCCCATTTCTTGTAGATGAATTGTTTTTGGGGAAAATATTATTTCATTTTTGGTTTTAGTATTTTGAATTTGAAAATACTATTTTCACCTATGACTTCCTTTGTTTATTATCTACCTTAAAAAAATAAAATAGTTTTTTTTTAATTTGACTAAAAATTTGAATGGTTCTCTAAGAAATGTGAAAGCCATCCCTAGGAATTCATTTGTGTTTTATTTTCTATTTATATTTTTAATTATAAAAATTAAAGTTTGTTTGGATTTTCTTACTTCTTAAAAACACTAATGAAATAAAATACTTCAATAACTAATTAGATTTTTGTTCACTATTAGACGTTCTAATGGAGAAAGTTTTCCTCATACTAGGGGTGTTTGAAAACTCTTTTAGTTATGCTTGGGCACTTAGGGTTGAAATTAAGCTTTTTTTTTTTTTATCACTTAGTGGTGGTTAGATTTTTTTTAGTACATCAATAATGGAGAGTGGGGGATTCGAACTCATGACCTTTTCGTCATAAGTTTTACTTGATGTCAGTTGAGTTATGCTCTTATTAGCAGTGATGGTTAGATTTCAAGCCTGCGTGATTGAGTATGGATGTTTATGGGACATCATTTCTCTATGTTCATTGGTTGAATTTTATGTCATTTATTAGTTAGCCCTCAATCACATTCTTCTAATTTAATTTTAAGAAAGTATTAATTTAACCATTAATTCAAAGGTTTAGGGTGTAATTTAGGGTTTAGGTTTAGAATTGTTTGAGACCATATAAATATTACCACTTATTCAAGTTTATGTTTTAATTTGAAAATATTGAAAGCTTAAAGTTAAAATTCCTCCTTAGGTTAAATATGCGATAAAAAGGATAATTATTTGTAAGAAAACCTAATGTCTAAAAATAAAAACTAAACATGGAATCATTTTAAACTATGCAATATTTTTCAAGAATTTTTTTTTAAAAAAAATTTACTAAAATTTTATAAGGTCGAGGAAGTTTAAAACAGAAAATATCAAAATTGTGTTAATTTTCACTCATTCTACCGTGGATGTATCAACCTTTTTATTTTTTTTTTCTAACGTGCTTCTTAATGGTAGCTAAACATAAATGAAGTGGTTATAATAATTTAAAACTATTTTAAATATATTAGGATCGATCATATTATATCCAGTTTAAATTGGTGTCAACCTCTAATTATTTATTTATTTATTTATTTATCTCCTTTAACCTTTCAGATAAGGATACTCTGGGGATCAAAAGCATCATAAAGGCTACTAAACCCATTCCACGGAAAGATAAACCTAGGGGTGGAAATTTTTAACCAACAAAAAAAAAAACATTGGAGTGTCCTATGAAGATGTCAATTTTCTAAACCTTGTACTTTGTAATAAATCCCCTTTTCCAGAGATAAATTACAATAGATCCTTCAAACTTTGAATTTTAA

mRNA sequence

CTTTGTTCTTTAAAATATTAGGGTTATTTGATTTAATTTGCTCAAAAATGACTTCTCCCAAGAGATCAACTTCTTTCATTTGGCAACTGGTGTTGGTTTTAATGGCTATTCTAGCTTACAATGTTGCAGCAAGGAATTTGGCTTCTGCACCTCAAACAGCTTATAAGGATACTCTGGGGATCAAAAGCATCATAAAGGCTACTAAACCCATTCCACGGAAAGATAAACCTAGGGGTGGAAATTTTTAACCAACAAAAAAAAAAACATTGGAGTGTCCTATGAAGATGTCAATTTTCTAAACCTTGTACTTTGTAATAAATCCCCTTTTCCAGAGATAAATTACAATAGATCCTTCAAACTTTGAATTTTAA

Coding sequence (CDS)

ATGACTTCTCCCAAGAGATCAACTTCTTTCATTTGGCAACTGGTGTTGGTTTTAATGGCTATTCTAGCTTACAATGTTGCAGCAAGGAATTTGGCTTCTGCACCTCAAACAGCTTATAAGGATACTCTGGGGATCAAAAGCATCATAAAGGCTACTAAACCCATTCCACGGAAAGATAAACCTAGGGGTGGAAATTTTTAA

Protein sequence

MTSPKRSTSFIWQLVLVLMAILAYNVAARNLASAPQTAYKDTLGIKSIIKATKPIPRKDKPRGGNF
Homology
[Close]
BLAST of Tan0018970 vs. NCBI nr
Match: KGN53139.1 (hypothetical protein Csa_015279 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 0 

Query: 9  SFIWQLVLVLMAILAYNVAARNLASAPQTAYKDTLGIKSIIKATKPIPRKDKPRGGNF 67
          S IWQLV+VLMAIL+ +VAAR+  S PQTAYKD +GIKSI K  KP+P+KDKPRGGN+
Sbjct: 6  SLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRGGNY 63

[Close]
BLAST of Tan0018970 vs. ExPASy TrEMBL
Match: A0A0A0KW87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 0 

Query: 9  SFIWQLVLVLMAILAYNVAARNLASAPQTAYKDTLGIKSIIKATKPIPRKDKPRGGNF 67
          S IWQLV+VLMAIL+ +VAAR+  S PQTAYKD +GIKSI K  KP+P+KDKPRGGN+
Sbjct: 6  SLIWQLVVVLMAILSCSVAARHRVSTPQTAYKDAVGIKSIKKVFKPVPKKDKPRGGNY 63

The following BLAST results are available for this feature:
BLAST of Tan0018970 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0018970 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53139.12.4e-1370.69hypothetical protein Csa_015279 [Cucumis sativus][more]
BLAST of Tan0018970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW871.2e-1370.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022260 PE=4 SV=1[more]
BLAST of Tan0018970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018970.1Tan0018970.1mRNA