Tan0018908 (gene) Snake gourd v1

Overview
NameTan0018908
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 23-like
LocationLG09: 57123270 .. 57123461 (-)
RNA-Seq ExpressionTan0018908
SyntenyTan0018908
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAAGAAGGTTGCCTGCATCGCCCTCTTCGTCGCCACTACCATCGGTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCTGCTGCTGCACCCGGGCCGAGTAGCACTGCCTCCGTCGCTCTTCCCGCCCTTGGATCGCTTGTTGGTGCCTCGCTTGTTTCCTTCATCGCCTCCATCCTGAATTGA

mRNA sequence

ATGGAAATGAAGAAGGTTGCCTGCATCGCCCTCTTCGTCGCCACTACCATCGGTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCTGCTGCTGCACCCGGGCCGAGTAGCACTGCCTCCGTCGCTCTTCCCGCCCTTGGATCGCTTGTTGGTGCCTCGCTTGTTTCCTTCATCGCCTCCATCCTGAATTGA

Coding sequence (CDS)

ATGGAAATGAAGAAGGTTGCCTGCATCGCCCTCTTCGTCGCCACTACCATCGGTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCTGCTGCTGCACCCGGGCCGAGTAGCACTGCCTCCGTCGCTCTTCCCGCCCTTGGATCGCTTGTTGGTGCCTCGCTTGTTTCCTTCATCGCCTCCATCCTGAATTGA

Protein sequence

MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIASILN
Homology
BLAST of Tan0018908 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-08
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC  LF A ++ AV+A++E  +P  APGP+S AS ALPALGSLVGASLVS  + 
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 ILN 64
           L+
Sbjct: 61 YLH 61

BLAST of Tan0018908 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

BLAST of Tan0018908 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

BLAST of Tan0018908 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 87.8 bits (216), Expect = 3.6e-14
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A 
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

BLAST of Tan0018908 vs. NCBI nr
Match: XP_023528634.1 (arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 6.2e-14
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMK +AC ALF A  + AVVASDESLSPAAAPGPSS AS ALPALGSL+GASLVSF+A 
Sbjct: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 ILN 64
          +LN
Sbjct: 61 VLN 63

BLAST of Tan0018908 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.3 bits (207), Expect = 4.0e-13
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS  LPALGSLVGASLVS +A 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

BLAST of Tan0018908 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

BLAST of Tan0018908 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-14
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS ALPALGSLVGASLVSF+A 
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

BLAST of Tan0018908 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-13
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMK +AC ALF A  + AVVASDES SPAAAPGPSS AS ALPALGSL+GASLVSF+A 
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 ILN 64
          +LN
Sbjct: 61 VLN 63

BLAST of Tan0018908 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-13
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC ALF A T+ AVVASDESLSPAAAPGPSS AS  LPALGSLVGASLVS +A 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

BLAST of Tan0018908 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC ALF A  + A VA+DES+SPAAAPGPSS AS ALP L    GAS+VSF+A+
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 56

BLAST of Tan0018908 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-09
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMKK+AC  LF A ++ AV+A++E  +P  APGP+S AS ALPALGSLVGASLVS  + 
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 ILN 64
           L+
Sbjct: 61 YLH 61

BLAST of Tan0018908 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 9.2e-08
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGP-SSTASVALPALGSLVGASLVSFIA 60
          MEMKK+AC  +F A ++ AV+A++     A APGP +S ASVA+PALGSLVGASLVS  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 SILN 64
            LN
Sbjct: 61 YYLN 61

BLAST of Tan0018908 vs. TAIR 10
Match: AT3G20865.1 (arabinogalactan protein 40 )

HSP 1 Score: 41.2 bits (95), Expect = 3.6e-04
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  MEMKKVACIALFVATTIGAVVASDESLSPAAAPGPSSTASVALPALGSLVGASLVSFIAS 60
          MEMK +  +ALF++  + + V++    SPA +PG SS ++VA P +GS+V ASL +F+A 
Sbjct: 1  MEMKNI-FVALFISAVLVSSVSAATMESPAPSPGASSASTVAFPVVGSIVAASLSAFLAL 60

Query: 61 IL 63
          +L
Sbjct: 61 LL 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8S2W41.8e-0860.32Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
KAG7025661.12.8e-1480.95Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023004714.12.8e-1480.95arabinogalactan peptide 23-like [Cucurbita maxima][more]
XP_022960230.13.6e-1480.95arabinogalactan peptide 23-like [Cucurbita moschata][more]
XP_023528634.16.2e-1477.78arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo][more]
XP_022933008.14.0e-1377.78arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalact... [more]
Match NameE-valueIdentityDescription
A0A6J1KX421.3e-1480.95arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4... [more]
A0A6J1H8I11.7e-1480.95arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE... [more]
A0A6J1IYE91.9e-1376.19arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4... [more]
A0A6J1F3F51.9e-1377.78arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE... [more]
A0A1S3CDX51.1e-0866.67arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G57690.11.3e-0960.32arabinogalactan protein 23 [more]
AT2G41905.19.2e-0859.38BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3... [more]
AT3G20865.13.6e-0443.55arabinogalactan protein 40 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 1..59
NoneNo IPR availablePANTHERPTHR34672:SF10BNAANNG40690D PROTEINcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018908.1Tan0018908.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane