Tan0018870 (gene) Snake gourd v1

Overview


Name	Tan0018870
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CST complex subunit CTC1
Location	LG02: 87276966 .. 87277593 (-)
RNA-Seq Expression	Tan0018870
Synteny	Tan0018870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTTCTAGTTTCCATCAATTTACAGTAAAAGAAAACATCTTTTTCTCCGTTGGTCACTCTTTGCAATAACTTTGCTCTTCTCTTCTTTTTTCTTCACTCCATTTTTTTCAGAGCTTTAGAAATCTCCTCGCCATTACAGAGTGACTCTGTTTTCTTCACGTTTGGATTTGTTGTAAAGGAAACAAAAGAAAGAAAACGCTGTGGCCGTCCCCGTTGCCGGAGCATTACATTACAGCTCTTGCTCCGGCCAAATGTCACTCCCAATTGAACAACAATCTCCGCCGGCGCCGGGAATGCAGCAACCTTACAGTGGTCATCCGGGCAGCGGCTCCGTTGGTCCGGTCATCGGAGTGCTCGTCGTCATCATTGTGTTCGCTGTGGTCGCCGTCGTGGTGGGGCGGCTGTGCTCGGGGAGGAGCATTATGGGTTACGGCCATTTCGACTTGGAGAGCTGGGCGGAGAGCAAATGTTCGTCTTGCATCGACGGAAGGATCAGCCCGCCGCCGCCGAGGGTCAATGTCTCCGCCGGCGCCGCATCTCTTCCGGCAGCGACAATGGCGGTCCAAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCTCAAAATCCACCTGCCAACGTTTGA

mRNA sequence

GTTCTTCTAGTTTCCATCAATTTACAGTAAAAGAAAACATCTTTTTCTCCGTTGGTCACTCTTTGCAATAACTTTGCTCTTCTCTTCTTTTTTCTTCACTCCATTTTTTTCAGAGCTTTAGAAATCTCCTCGCCATTACAGAGTGACTCTGTTTTCTTCACGTTTGGATTTGTTGTAAAGGAAACAAAAGAAAGAAAACGCTGTGGCCGTCCCCGTTGCCGGAGCATTACATTACAGCTCTTGCTCCGGCCAAATGTCACTCCCAATTGAACAACAATCTCCGCCGGCGCCGGGAATGCAGCAACCTTACAGTGGTCATCCGGGCAGCGGCTCCGTTGGTCCGGTCATCGGAGTGCTCGTCGTCATCATTGTGTTCGCTGTGGTCGCCGTCGTGGTGGGGCGGCTGTGCTCGGGGAGGAGCATTATGGGTTACGGCCATTTCGACTTGGAGAGCTGGGCGGAGAGCAAATGTTCGTCTTGCATCGACGGAAGGATCAGCCCGCCGCCGCCGAGGGTCAATGTCTCCGCCGGCGCCGCATCTCTTCCGGCAGCGACAATGGCGGTCCAAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCTCAAAATCCACCTGCCAACGTTTGA

Coding sequence (CDS)

ATGTCACTCCCAATTGAACAACAATCTCCGCCGGCGCCGGGAATGCAGCAACCTTACAGTGGTCATCCGGGCAGCGGCTCCGTTGGTCCGGTCATCGGAGTGCTCGTCGTCATCATTGTGTTCGCTGTGGTCGCCGTCGTGGTGGGGCGGCTGTGCTCGGGGAGGAGCATTATGGGTTACGGCCATTTCGACTTGGAGAGCTGGGCGGAGAGCAAATGTTCGTCTTGCATCGACGGAAGGATCAGCCCGCCGCCGCCGAGGGTCAATGTCTCCGCCGGCGCCGCATCTCTTCCGGCAGCGACAATGGCGGTCCAAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCTCAAAATCCACCTGCCAACGTTTGA

Protein sequence

MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAATMAVQTQQETKQEEPASQNPPANV

Homology

[Close]

BLAST of Tan0018870 vs. NCBI nr
Match: XP_038885752.1 (uncharacterized protein LOC120076044 [Benincasa hispida])

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-49
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MSLPIEQQSPPA  MQQ Y GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY
Sbjct: 1   MSLPIEQQSPPAAEMQQNYGGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAATMAVQTQQETK--QEEPASQ 120
           GHFDLESWAE+KCSSCIDGRISPPPPRV+  A AASLPA TMA + QQETK  QEEPASQ
Sbjct: 61  GHFDLESWAETKCSSCIDGRISPPPPRVDGCAAAASLPAGTMAARPQQETKQEQEEPASQ 120

Query: 121 NPPAN 124
           NPPAN
Sbjct: 121 NPPAN 125

[Close]

BLAST of Tan0018870 vs. NCBI nr
Match: XP_022144319.1 (uncharacterized protein LOC111014030 [Momordica charantia])

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 109/124 (87.90%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MSLPIEQQSPPAPGMQQPY GH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMGY
Sbjct: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60

Query: 61  GHFDLESWAESKCSSCIDGRISPPPPRVNVSAG--AASLPAATMAVQTQQETKQEEPASQ 120
           GHFDLESWAE+KCSSCIDGRISPPPPR NVSA   A +LP ATMAVQTQQETKQEEPASQ
Sbjct: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALP-ATMAVQTQQETKQEEPASQ 120

Query: 121 NPPA 123
           NP A
Sbjct: 121 NPSA 123

[Close]

BLAST of Tan0018870 vs. NCBI nr
Match: XP_031737057.1 (uncharacterized protein LOC116402140 [Cucumis sativus] >KGN62547.1 hypothetical protein Csa_022283 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-48
Identity = 109/125 (87.20%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MSLPIEQQSP  PGMQQ Y GHPGSGSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGY
Sbjct: 1   MSLPIEQQSP--PGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAESKCSSCIDGRISPPPPRVNVS--AGAASLPAATMAVQTQQETKQEEPASQ 120
           GHFDLESWAE+KCSSCIDGRI+PPPPRV+ S  A A+SLPA TMAV TQQETKQEEPASQ
Sbjct: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAGTMAVGTQQETKQEEPASQ 120

Query: 121 NPPAN 124
           NP AN
Sbjct: 121 NPSAN 123

[Close]

BLAST of Tan0018870 vs. NCBI nr
Match: KAA0063096.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 108/124 (87.10%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MS PIEQQSP  PG+QQ Y GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY
Sbjct: 1   MSFPIEQQSP--PGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAESKCSSCIDGRISPPPPRVNVS-AGAASLPAATMAVQTQQETKQEEPASQN 120
           GHFDLESWAE+KCSSCIDGRI+PPPPRV+ S A A+SLPA TMAV TQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQN 120

Query: 121 PPAN 124
           P AN
Sbjct: 121 PSAN 122

[Close]

BLAST of Tan0018870 vs. NCBI nr
Match: KAG6598392.1 (hypothetical protein SDJN03_08170, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 107/123 (86.99%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MSLPIEQQSPPA GM  PY GHP SGSVGPVIGVLVVIIVFAVVAVVVGRLCSG SIMGY
Sbjct: 1   MSLPIEQQSPPATGMLPPYGGHPVSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGMSIMGY 60

Query: 61  GHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAATMAVQTQQETKQEEPASQNP 120
           GHFDLESWAE+KCSSCIDGRIS  PPRVNVS  AASLP  TMAV+TQQETKQEEPASQNP
Sbjct: 61  GHFDLESWAETKCSSCIDGRISSTPPRVNVSP-AASLPTGTMAVRTQQETKQEEPASQNP 120

Query: 121 PAN 124
            A+
Sbjct: 121 TAS 122

[Close]

BLAST of Tan0018870 vs. ExPASy TrEMBL
Match: A0A6J1CRZ5 (uncharacterized protein LOC111014030 OS=Momordica charantia OX=3673 GN=LOC111014030 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.3e-49
Identity = 109/124 (87.90%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MSLPIEQQSPPAPGMQQPY GH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMGY
Sbjct: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60

Query: 61  GHFDLESWAESKCSSCIDGRISPPPPRVNVSAG--AASLPAATMAVQTQQETKQEEPASQ 120
           GHFDLESWAE+KCSSCIDGRISPPPPR NVSA   A +LP ATMAVQTQQETKQEEPASQ
Sbjct: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALP-ATMAVQTQQETKQEEPASQ 120

Query: 121 NPPA 123
           NP A
Sbjct: 121 NPSA 123

[Close]

BLAST of Tan0018870 vs. ExPASy TrEMBL
Match: A0A0A0LP67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360640 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 109/125 (87.20%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MSLPIEQQSP  PGMQQ Y GHPGSGSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGY
Sbjct: 1   MSLPIEQQSP--PGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAESKCSSCIDGRISPPPPRVNVS--AGAASLPAATMAVQTQQETKQEEPASQ 120
           GHFDLESWAE+KCSSCIDGRI+PPPPRV+ S  A A+SLPA TMAV TQQETKQEEPASQ
Sbjct: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAGTMAVGTQQETKQEEPASQ 120

Query: 121 NPPAN 124
           NP AN
Sbjct: 121 NPSAN 123

[Close]

BLAST of Tan0018870 vs. ExPASy TrEMBL
Match: A0A5A7V9H6 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43357G00010 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.2e-48
Identity = 108/124 (87.10%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MS PIEQQSP  PG+QQ Y GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY
Sbjct: 1   MSFPIEQQSP--PGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAESKCSSCIDGRISPPPPRVNVS-AGAASLPAATMAVQTQQETKQEEPASQN 120
           GHFDLESWAE+KCSSCIDGRI+PPPPRV+ S A A+SLPA TMAV TQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQN 120

Query: 121 PPAN 124
           P AN
Sbjct: 121 PSAN 122

[Close]

BLAST of Tan0018870 vs. ExPASy TrEMBL
Match: A0A6J1KK79 (uncharacterized protein LOC111496028 OS=Cucurbita maxima OX=3661 GN=LOC111496028 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.4e-46
Identity = 106/124 (85.48%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYSGHPGS-GSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG 60
           MSLPI+QQSPPAPGMQQPY GH  S GSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG
Sbjct: 1   MSLPIDQQSPPAPGMQQPYGGHASSGGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG 60

Query: 61  YGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAATMAVQTQQETKQEEPASQN 120
           YGHFDLE WAE KCSSCIDGRIS P PRVNVS  AASLPAATM+VQTQ    Q+EPASQN
Sbjct: 61  YGHFDLERWAEVKCSSCIDGRISSPSPRVNVSTAAASLPAATMSVQTQ----QDEPASQN 120

Query: 121 PPAN 124
           PP N
Sbjct: 121 PPPN 120

[Close]

BLAST of Tan0018870 vs. ExPASy TrEMBL
Match: A0A6P4ABB2 (uncharacterized protein LOC107420905 OS=Ziziphus jujuba OX=326968 GN=LOC107420905 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.9e-29
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MSLPI-EQQSPPAPGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG 60
           M++P+ EQ  PPA  +QQP+S H   GS+GP+I VLVVIIV  ++AV+VGRLCSG+S+MG
Sbjct: 1   MAMPLYEQPPPPAFTVQQPHSTHSAHGSIGPLIAVLVVIIVLGILAVMVGRLCSGKSMMG 60

Query: 61  YGHFDLESWAESKCSSCIDGRISPPPPRVNVSAGAASLPAATMAVQTQQETKQEEPASQN 120
           YG FDLESWAE KCSSCIDG+I+ P PR N+S+   S+P  TM V+T QE  QEE +S N
Sbjct: 61  YGQFDLESWAERKCSSCIDGKINSPLPRTNISS-CNSVP-ITMPVETHQEIDQEELSSPN 120

Query: 121 PPANV 125
           P ANV
Sbjct: 121 PSANV 123

[Close]

BLAST of Tan0018870 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-17
Identity = 54/138 (39.13%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 2   SLPIEQQSPPAPGMQQPYS--GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG 61
           S+P+  Q PPA  + Q  S     G+ ++GP I V +V+ V  V+A V+GRLCSG++I+G
Sbjct: 3   SMPLYWQPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILG 62

Query: 62  YGHFDLESWAESKCSSCIDGRISP--------PPPRVNVSAGAASLPA------ATMAVQ 121
           YG +D+E WAES+C SCIDG I P        PPPR  +   ++ + A      A +  +
Sbjct: 63  YGDYDMERWAESRCGSCIDGHIHPHRPSPSPTPPPRQPLHHTSSGVSAESEGHVADLDHE 122

[Close]

BLAST of Tan0018870 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-09
Identity = 39/95 (41.05%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 13  PGMQQPYSGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAESK 72
           P   QP S +    S+  ++ VL VI + +V+A V  RLC GR +   G  D+E W E K
Sbjct: 24  PSQDQP-SHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHLSHGGDHDIEGWVERK 83

Query: 73  CSSCIDGRI-------SPPPPRVNVSAGAASLPAA 101
           C SCID  I       SPPPP    +A   S PAA
Sbjct: 84  CRSCIDAGIPAVSAAPSPPPPPPPATAEERSKPAA 117

The following BLAST results are available for this feature:

BLAST of Tan0018870 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885752.1	4.0e-49	88.00	uncharacterized protein LOC120076044 [Benincasa hispida]	[more]
XP_022144319.1	1.5e-48	87.90	uncharacterized protein LOC111014030 [Momordica charantia]	[more]
XP_031737057.1	3.4e-48	87.20	uncharacterized protein LOC116402140 [Cucumis sativus] >KGN62547.1 hypothetical ...	[more]
KAA0063096.1	1.3e-47	87.10	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
KAG6598392.1	1.1e-46	86.99	hypothetical protein SDJN03_08170, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0018870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRZ5	7.3e-49	87.90	uncharacterized protein LOC111014030 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0LP67	1.6e-48	87.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360640 PE=4 SV=1	[more]
A0A5A7V9H6	6.2e-48	87.10	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1KK79	3.4e-46	85.48	uncharacterized protein LOC111496028 OS=Cucurbita maxima OX=3661 GN=LOC111496028...	[more]
A0A6P4ABB2	4.9e-29	61.60	uncharacterized protein LOC107420905 OS=Ziziphus jujuba OX=326968 GN=LOC10742090...	[more]

BLAST of Tan0018870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26520.1	4.3e-17	39.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57500.1	5.6e-09	41.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..124
None	No IPR available	PANTHER	PTHR33429:SF24	EXPRESSED PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018870.1	Tan0018870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane