Tan0018844 (gene) Snake gourd v1

Overview


Name	Tan0018844
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Tetratricopeptide-like helical
Location	LG01: 13836678 .. 13837019 (-)
RNA-Seq Expression	Tan0018844
Synteny	Tan0018844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATCGATTCCAATGAATGGGGTATGAATGCTGAAGAATGGGAAAGAAATGAAATGGAGGACGACGTTCCGCCGCATTTATTAGCTGACGAAGACGAAGATGGAGACGACGACGATGGAAACTTAACGAGTAGTGCTCGTAACTATAAGTTTAGGGGCATTTTGTACCGTCTAAGCAGAAGCATAGAGAAGAGGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGAACAATTGTAGGGTTTCTGATGGTGATGGTCATGAAGATAATTAGTGTACAGAGATCCAAGTTCAACAAATTGTGA

mRNA sequence

ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATCGATTCCAATGAATGGGGTATGAATGCTGAAGAATGGGAAAGAAATGAAATGGAGGACGACGTTCCGCCGCATTTATTAGCTGACGAAGACGAAGATGGAGACGACGACGATGGAAACTTAACGAGTAGTGCTCGTAACTATAAGTTTAGGGGCATTTTGTACCGTCTAAGCAGAAGCATAGAGAAGAGGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGAACAATTGTAGGGTTTCTGATGGTGATGGTCATGAAGATAATTAGTGTACAGAGATCCAAGTTCAACAAATTGTGA

Coding sequence (CDS)

ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATCGATTCCAATGAATGGGGTATGAATGCTGAAGAATGGGAAAGAAATGAAATGGAGGACGACGTTCCGCCGCATTTATTAGCTGACGAAGACGAAGATGGAGACGACGACGATGGAAACTTAACGAGTAGTGCTCGTAACTATAAGTTTAGGGGCATTTTGTACCGTCTAAGCAGAAGCATAGAGAAGAGGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGAACAATTGTAGGGTTTCTGATGGTGATGGTCATGAAGATAATTAGTGTACAGAGATCCAAGTTCAACAAATTGTGA

Protein sequence

MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNYKFRGILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMVMVMKIISVQRSKFNKL

Homology

[Close]

BLAST of Tan0018844 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 83/132 (62.88%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARN 60
           MSVSLEALAMAGIDSNEWGM+A+EWERNE+ D VPPHLLADE+   DD+DG  +TS+  N
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEI-DVVPPHLLADEE---DDEDGEYVTSTISN 60

Query: 61  YKFR----------------------GILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMV 110
           Y FR                      GI Y LS+ IEKRASNG++SVRI+VRTI+GFLMV
Sbjct: 61  YCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 120

[Close]

BLAST of Tan0018844 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-27
Identity = 78/130 (60.00%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNY 60
           MSVSLEALAMAGI SNEW M+AEEWERNE+E+DVPPHLLADE    DDDD N+TS+  NY
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADE----DDDDDNVTSTVSNY 60

Query: 61  KFR----------------------GILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMVM 109
            F                       GIL  LS+S+EKRASNG+SSVRI+VRTI+GFL+V 
Sbjct: 61  SFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVK 120

[Close]

BLAST of Tan0018844 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-27
Identity = 78/130 (60.00%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNY 60
           MSVSLEALAMAGI SNEW M+AEEWERNE+E+DVPPHLLADE    DDDD N+TS+  NY
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADE----DDDDDNVTSTVSNY 60

Query: 61  KFR----------------------GILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMVM 109
            F                       GIL  LS+S+EKRASNG+SSVRI+VRTI+GFL+V 
Sbjct: 61  SFPVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVK 120

[Close]

BLAST of Tan0018844 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 74/121 (61.16%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARN 60
           MSVSLEALAMAGIDSNEWGM+A+EWERNE+ D VPPHLLADE+   DD+DG  +TS+  N
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEI-DVVPPHLLADEE---DDEDGEYVTSTISN 60

Query: 61  YKFR----------------------GILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMV 99
           Y FR                      GI Y LS+ IEKRASNG++SVRI+VRTI+GFLMV
Sbjct: 61  YCFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 117

[Close]

BLAST of Tan0018844 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 65/124 (52.42%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDD------------ 60
           MSVSLEALAMAGIDSNEW M+AEEWERNEME D+PPHLLADED++ D+            
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60

Query: 61  ---DDGNLTSSARNYKFRGILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMVMVMKIISV 110
              DDG    S        I++ L +  EKR  N +SS+ I+   +VGFLM M +KII+ 
Sbjct: 61  CRKDDGVGGVSCS----PTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIAS 120

[Close]

BLAST of Tan0018844 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.0e-28
Identity = 83/132 (62.88%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARN 60
           MSVSLEALAMAGIDSNEWGM+A+EWERNE+ D VPPHLLADE+   DD+DG  +TS+  N
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEI-DVVPPHLLADEE---DDEDGEYVTSTISN 60

Query: 61  YKFR----------------------GILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMV 110
           Y FR                      GI Y LS+ IEKRASNG++SVRI+VRTI+GFLMV
Sbjct: 61  YCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 120

[Close]

BLAST of Tan0018844 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.5e-27
Identity = 81/133 (60.90%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGNLTSSARNY 60
           MSVSLEALAMAGIDSNEW M+AEEWERNE+ D VPPHLLADE++D D D+   TS+  NY
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEI-DVVPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  KF------------------------RGILYRLSRSIEKRASNGVSSVRIMVRTIVGFLM 110
            F                         GI   LS+ IEKRASNG+SSVRI+VRTI+GFLM
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

[Close]

BLAST of Tan0018844 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 74/121 (61.16%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDDDDGN-LTSSARN 60
           MSVSLEALAMAGIDSNEWGM+A+EWERNE+ D VPPHLLADE+   DD+DG  +TS+  N
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEI-DVVPPHLLADEE---DDEDGEYVTSTISN 60

Query: 61  YKFR----------------------GILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMV 99
           Y FR                      GI Y LS+ IEKRASNG++SVRI+VRTI+GFLMV
Sbjct: 61  YCFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 117

[Close]

BLAST of Tan0018844 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-19
Identity = 65/124 (52.42%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLADEDEDGDD------------ 60
           MSVSLEALAMAGIDSNEW M+AEEWERNEME D+PPHLLADED++ D+            
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60

Query: 61  ---DDGNLTSSARNYKFRGILYRLSRSIEKRASNGVSSVRIMVRTIVGFLMVMVMKIISV 110
              DDG    S        I++ L +  EKR  N +SS+ I+   +VGFLM M +KII+ 
Sbjct: 61  CRKDDGVGGVSCS----PTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIAS 120

[Close]

BLAST of Tan0018844 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-08
Identity = 47/93 (50.54%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDSNEWGMNAEEWERN----EMEDDVPPHLLADEDEDG---------- 60
          M VSLEALAMAGIDSNEW M+AEEW+ N    E +D +PPHLLADEDE+           
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISG 60

Query: 61 -DDDDGNLTSSARNYKFRGILYRLSRSIEKRAS 79
             DDG +   A    FR     L + +EKRAS
Sbjct: 61 HRKDDGLVVFCA----FRRSYAILRKMMEKRAS 89

[Close]

BLAST of Tan0018844 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 5.9e-05
Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = 0


Query: 5   LEALAMAGIDSNEWGMNAEEWERNEMEDDVPPHLLAD---------EDEDGDDDDGNLTS 64
           +EALAMAG+D  EWG++ EEWE    E  VP HLLAD         + +D DDDD  L  
Sbjct: 1   MEALAMAGVDYQEWGLSIEEWEL--QESVVPLHLLADDFKEEEQEEDHQDNDDDDRVLDG 60

Query: 65  SA-RNYKFRGILYRLSRSIEKRASNGV---SSVRIMVRTIVGFLMVMVMKII 104
            A +    R I   + + IE+  S+ +     ++ +   +  FL   V+  +
Sbjct: 61  LAVKQSVTRDIRASVGKFIEQSMSHMIVHLKQLKFLTLLLENFLFTHVLDFL 110

The following BLAST results are available for this feature:

BLAST of Tan0018844 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018844 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16880.1	1.0e-27	62.88	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
KAG7015383.1	2.3e-27	60.00	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577295.1	2.3e-27	60.00	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0044707.1	2.6e-23	61.16	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
XP_022943015.1	1.1e-18	52.42	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]

BLAST of Tan0018844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZU0	5.0e-28	62.88	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KWE7	5.5e-27	60.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5A7TS68	1.3e-23	61.16	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1FX98	5.5e-19	52.42	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KU90	2.6e-08	50.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of Tan0018844 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22320.1	5.9e-05	33.93	unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018844.1	Tan0018844.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane