Tan0018834 (gene) Snake gourd v1

Overview
NameTan0018834
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransmembrane protein, putative
LocationLG06: 1507191 .. 1511137 (-)
RNA-Seq ExpressionTan0018834
SyntenyTan0018834
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGGTTACCATTTTCCGTGGTAATCGGTTTTCCGCGACCTCAGGCTCAAGTCTCAAGTTTCTCGATCAACCTCCTCCATCACTCTTCTTCTTCTCCCTTTTCCTTTTTCAACCCTATTTCTCTTTTACTCACTCTTTTTCCTCTCTTCATTTCTCTCCGTCATTCGATTCCATTCCCCCTTTCATCTCTGTTTCTCGTTTTCCTTTCCGATTCCCGTTTTTCTTTTGTCTCATTCTGATTTTCGCGTTCTGATTTTGGCTCTCAACCCTTCTTCGCTCCGTGGATTAACGCTACATTGGTAAGTATATTCCCCCAATTTCAGATCTAACTTGTTTTAAACTGAGTTGTTTCTTTTTTCAATTTACAATCTAGCTAGCGCATTATTTCTTGGGGTTTCTTATCTATTTGCATGATTGTTCTGCTGAATACGGATATATGGATGAGGAAGTGGAGAAAGGGAATCAAAATTCTTACTTGGGTATTGCCCGGGTTAATAAAAACATGGCCGAACTCAAAAACTTAAATGGGTTATGATAAATTAATCTTATAGCTTTAGTTTAACACTTCCGTGGAAATTTGTGGAAGTCCCAACGAGTAGAAATCTATTTTAATTGCGGAGAAAATGAGATTACAAACACTGGTTATGTAAAATCATCCTTGAACCTTAAAGGGTCTGTTTGGCCCACTGGAACTGTGTTATAATAACCTATGAAATACTCTGACCCCAAACACTATTATAACACTCAGAAATTATCTACTGCATTTTAAATAATATTATATGTTTCACATACCAGGGCCGTTTGGGGTGAATGAGTTATAATAACCGGGGTTATAATAGTCTGTGAAACATATAATATTATTTAAAATGCAGATTAATGTAGTCTGGGTTATAATAGTTTGTGTTTGGAGTGCAGAATATTTCAAAGGGTTATAATAACCAGTAGGCCAAACAGGCCCTCACAGACTATTATAACCCACCCCCAAACAACCCCAAAGTGATGGATACCCCGTGTTCACTTTTTGCACTCTCCCTGTGGATTTGATGAGAGAGCACTTCTTCAATTCTGTTCCTTCTCTGCTTCATGCTAGATTACATACTTTTCGGCCAGGGAAACATGGCCACTATTGCTAGTTTACAGAATTTATGTCTAGGGTTCTTTTTAGTTCTAACACTGGTCTTCCACCATTTATCATGCGGCCTCTACATTGAAACGAATGATTGAATTTTTTTCTTGAATTCTTATCCGTTGGCTCTCCCTTTTGCTTCTGCGAATTTACATCTAATGGCTTGGACAAGATAAAATATTCCATAGAGCAAATTTGCTTTCTTTCTAGTGTTGATTTCATTTTCTCACCATTCGTTTGTTGAATTTATACGTAGAGGGCTGGCTTCTAATATTACTTAAGAGAGGACGGGCAAAGAGAGCCGTTGTGTGCAAAAGTCTTGTGAAGTCTGATTTTTGGGAGATCAGCTGCTGCAAGCTAAGTCTTTGAGGCAGAAAAGGAACGGTTTTCTATTTGGTACTTTCTTCTTTTTCTCCCCTTTTCTTTTCTTTTTTTTCCTTTCGAGACTGGACTATGAATTTTATATTTTTCTGTCAGTCTTCTCTTAACAAATATTTATTGGGCTTGACGTGGATGTCTGTTGAGAATGAAGAAACTGACGACTTTTTTCATCTTGTTAACTTGCATTTTAGTCCATGAAAAGGGTAAATCAATAATTTGATATTCAAATAAGAAACCGTGGTGTCAACAGAAATGGAAGCATGCTGATATTGAGTGTCTCACTGTGGCATGCCTTTTCAACATTATAGAGAATGAACAACATTCTTTTACACGTTTTTAGAGAACAGAACACATTCTTGTAGTCTTGTCACAGTGATAGTCAGGAGGGCAATTAGTTCAAAATTGGAGGATGTGAAATGTGGATTGCCAATGCCAACATTACTAGAATTGTATTTGAACTCCTAAACTAGTAGTCACACACATGAGGGCTTCAACCAAGTAAACTAATATTGCCAAGGGTGAGGGTGCCCAAGTGACGGGCGTGAGATGATATCTGGGGATTCAAGCCCTAGGTTAAAAACTTAAGGTTAAATTACTAGTTTGATTCACAAACTTTCGAGATTGTGTTTAATAAGTCTCTGAATTTAAAAGTGTCTAATAGATTCTTAAACTTTCTACATTGTTTCTAATTGGTCTCTAAAATTTTAGAAGTATCTATCAAGTCTCTAAGCTTTCAAATTTGTAACCAATAGGTCTCTAAATTTTAAAAAGCGTCTTAATAACCAATAGATTACTTTTACTTATAAGGTAGGTGCCTTTTGTTTCCAATAAAAAAAAAGTAAAAGTAAAAGTAAGGGATCTACTAGACATATAATTGAAAGTTTATAGATTAGTAGATATAAAATTGAAAGTGCATGGACCTATTAGATATTTTTTAAAGTTCACAAGGACTTATGAGATACAATATTAAAAGTTTAGGCACTTATTTGACATTTTTTAAAGTTTTGAAACCTATTAGACACATCTCTTGTAGTTCAAGGATCAAACATGTAATTTAACCAAAATTTAGTAGCTTAAAACTTTTGTTTGCTCCCAACATTGGCTTTGCGTGAGGATAATAAGCATAATGCAAGGGGTGGGGCACAATGTTTTAGAGGCTAAAGGCTGCCTCGAGGCTTTTCCTCTTGAAGAGGCAAGGCATAAGCCTCGATTTCAATTAAAAACATTATACAAATCCTAAATTTGTGAGATCAAGTATTGCTAAACATAATAGTCATATAAAAGTAAAAGGAAAAAAAAAAGAATAAAATCATCCTTGTCAATTGCCACTTGAACAAAAATTCTAAAAGAATATCTTTAATATCACTACTGTTATTATTGATAAGATCTACTAATTCGATAAATCTTTGTCCTCAATGTTTTTAAAGCTTAGGGCGTAGTAAAAGTAGTAATAGTTCAAATGATTACGACTCAAACCTTTATATTTTTTTAAGAATGTGGCAAAACTAATACTATTCTTCTAATCATGGGGAGACTTTAAGCCTCACTGTGTTATCATAGAGTTGTAAGCCTCTTATGGTCCCAAAAGTTGTAAGTCTCGAGGCTAAAAGTTAGAGCCTTGCCTCAAGGCGAGCCTAAAGGTGTAAGCCTCCTAGGCCTTTTAAAACATTGGTGGGGGCATCAATACCTCTTTTATAAAAAACCGATGATGAAATACTGCAAGTTCTTGCATTGTAGTTTAGTTATTTGTTGGGACATAGTTGTATTGTTGTTAGTTGCTGAATATTACAGAGACAGATTTTCTACACTAGAATAATTGTGTAATTGTTGCAGAATATTTATAAACTTGTACTTTTAAACTCAACTTTTTTACGTCACCACCCCATTTAATTCAACATTACCAGCTTCCCATTTTTCTCAGTTTGTGAGGTGTATCCCTAAGATTCCAACTGTGCAAACTGCAGATATCTCAAGAAATAACATGGCAGTAAAACCAACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTCGCGAAAATTGCTGGTGCAATGAAAGCTGCAGGCGGCGCAAAGTTAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCGTTGGCAGGATCAAAACAAGAGCAGAAGGATGATTCTAAACACTCTCCAAAATGAAGCCTCCAGTTTTTGAAATCTCTGTAACACAACACAAACAAATCCCAATAATGTTTTGGGACATTTTGTCTTCTTTCTTCTTTTCCTCTGTAATTTTTGTAGGGAGATATAATGTATAAACCCCCAATCCAACCTTTGAGGCGTCAGCCAAAGCCATGGTGCTGAAACAATAAGAGCTGGCCGATTTTATTTAGTTCGCAGGGTCGATTCTATGTCACGATGTCATATCGTTCTATATCACATGAAACATTTTTGAA

mRNA sequence

ATTTGGTTACCATTTTCCGTGGTAATCGGTTTTCCGCGACCTCAGGCTCAAGTCTCAAGTTTCTCGATCAACCTCCTCCATCACTCTTCTTCTTCTCCCTTTTCCTTTTTCAACCCTATTTCTCTTTTACTCACTCTTTTTCCTCTCTTCATTTCTCTCCGTCATTCGATTCCATTCCCCCTTTCATCTCTGTTTCTCGTTTTCCTTTCCGATTCCCGTTTTTCTTTTGTCTCATTCTGATTTTCGCGTTCTGATTTTGGCTCTCAACCCTTCTTCGCTCCGTGGATTAACGCTACATTGAGGGCTGGCTTCTAATATTACTTAAGAGAGGACGGGCAAAGAGAGCCGTTGTGTGCAAAAGTCTTGTGAAGTCTGATTTTTGGGAGATCAGCTGCTGCAAGCTAAGTCTTTGAGGCAGAAAAGGAACGGTTTTCTATTTGATATCTCAAGAAATAACATGGCAGTAAAACCAACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTCGCGAAAATTGCTGGTGCAATGAAAGCTGCAGGCGGCGCAAAGTTAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCGTTGGCAGGATCAAAACAAGAGCAGAAGGATGATTCTAAACACTCTCCAAAATGAAGCCTCCAGTTTTTGAAATCTCTGTAACACAACACAAACAAATCCCAATAATGTTTTGGGACATTTTGTCTTCTTTCTTCTTTTCCTCTGTAATTTTTGTAGGGAGATATAATGTATAAACCCCCAATCCAACCTTTGAGGCGTCAGCCAAAGCCATGGTGCTGAAACAATAAGAGCTGGCCGATTTTATTTAGTTCGCAGGGTCGATTCTATGTCACGATGTCATATCGTTCTATATCACATGAAACATTTTTGAA

Coding sequence (CDS)

ATGGCAGTAAAACCAACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTCGCGAAAATTGCTGGTGCAATGAAAGCTGCAGGCGGCGCAAAGTTAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCGTTGGCAGGATCAAAACAAGAGCAGAAGGATGATTCTAAACACTCTCCAAAATGA

Protein sequence

MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDDSKHSPK
Homology
BLAST of Tan0018834 vs. NCBI nr
Match: KAA0059427.1 (hypothetical protein E6C27_scaffold242G001540 [Cucumis melo var. makuwa] >TYK03898.1 hypothetical protein E5676_scaffold347G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG+KQ+QKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 61 SKHSPK 67
          SKHSPK
Sbjct: 61 SKHSPK 66

BLAST of Tan0018834 vs. NCBI nr
Match: KAE8646513.1 (hypothetical protein Csa_016818 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG+KQ+QKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 61 SKHSPK 67
          SKHSPK
Sbjct: 61 SKHSPK 66

BLAST of Tan0018834 vs. NCBI nr
Match: ADN34112.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
          MAVKPTVALRAVLVGGIAAFAK+AGAMKAAGGAKLGAATAAMTAAATAALAG+KQ+QKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKLAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 61 SKHSPK 67
          SKHSPK
Sbjct: 61 SKHSPK 66

BLAST of Tan0018834 vs. NCBI nr
Match: XP_022992464.1 (uncharacterized protein LOC111488760 [Cucurbita maxima])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQ+QKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 61 SKHSPK 67
          SKH PK
Sbjct: 61 SKHPPK 66

BLAST of Tan0018834 vs. NCBI nr
Match: KAG7014012.1 (hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 8.7e-19
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0

Query: 1   MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
           MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQ+QKDD
Sbjct: 110 MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 169

Query: 61  SKHSPK 67
           SKH PK
Sbjct: 170 SKHPPK 175

BLAST of Tan0018834 vs. ExPASy TrEMBL
Match: A0A5A7UXR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00940 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.5e-20
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG+KQ+QKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 61 SKHSPK 67
          SKHSPK
Sbjct: 61 SKHSPK 66

BLAST of Tan0018834 vs. ExPASy TrEMBL
Match: E5GCB3 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
          MAVKPTVALRAVLVGGIAAFAK+AGAMKAAGGAKLGAATAAMTAAATAALAG+KQ+QKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKLAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 61 SKHSPK 67
          SKHSPK
Sbjct: 61 SKHSPK 66

BLAST of Tan0018834 vs. ExPASy TrEMBL
Match: A0A6J1JXL7 (uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQ+QKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 61 SKHSPK 67
          SKH PK
Sbjct: 61 SKHPPK 66

BLAST of Tan0018834 vs. ExPASy TrEMBL
Match: A0A6J1CPT9 (uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013620 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.2e-19
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
          M VKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQ+QKDD
Sbjct: 1  MEVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 61 SKHSPK 67
          SKH PK
Sbjct: 61 SKHPPK 66

BLAST of Tan0018834 vs. ExPASy TrEMBL
Match: A0A6J1GSG6 (uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC111456569 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.2e-19
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQEQKDD 60
          MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQ+QKDD
Sbjct: 1  MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 61 SKHSPK 67
          SKH PK
Sbjct: 61 SKHPPK 66

BLAST of Tan0018834 vs. TAIR 10
Match: AT3G13845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-14
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALA-GSKQEQKD 60
          M+VKPTVALR +LVGG+A FAK+A AMKAAGG KLGAA  AMT AATAA++ GSKQ+QK 
Sbjct: 1  MSVKPTVALRGILVGGVAIFAKVAAAMKAAGGVKLGAAATAMTVAATAAVSGGSKQDQKQ 60

Query: 61 DSKHSP 66
          D+  +P
Sbjct: 61 DASKAP 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0059427.11.3e-1996.97hypothetical protein E6C27_scaffold242G001540 [Cucumis melo var. makuwa] >TYK038... [more]
KAE8646513.11.3e-1996.97hypothetical protein Csa_016818 [Cucumis sativus][more]
ADN34112.12.3e-1995.45hypothetical protein [Cucumis melo subsp. melo][more]
XP_022992464.16.7e-1995.45uncharacterized protein LOC111488760 [Cucurbita maxima][more]
KAG7014012.18.7e-1993.94hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A5A7UXR86.5e-2096.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GCB31.1e-1995.45Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A6J1JXL73.2e-1995.45uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760... [more]
A0A6J1CPT94.2e-1995.45uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1GSG64.2e-1993.94uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC1114565... [more]
Match NameE-valueIdentityDescription
AT3G13845.15.3e-1469.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36755PROTEIN, PUTATIVE-RELATEDcoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018834.1Tan0018834.1mRNA
Tan0018834.2Tan0018834.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane