Tan0018730 (gene) Snake gourd v1

Overview


Name	Tan0018730
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein PAM68, chloroplastic
Location	LG01: 26867149 .. 26868560 (+)
RNA-Seq Expression	Tan0018730
Synteny	Tan0018730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAGATTATAATCTTCCGCCAATTCTAAGCAAAAAATTTCATACCAAAAACCTTATCCTCTTTCAATGGCCACATCCATGGCGTCCGTCTCTGCTTCCCTCAGTGAAGACAAAATGTAGAGACGAACCGACAGTGTTTCAGTTTCAGAGACACATCCTAATGGCCGCCATTGCCGGATCGCTCAACCTTCCTTTTGCGCCTTCAAACCTTCCATCACTTCATATTAAGGTACTCTTCTCACTTCTCCTCGCGATTGCGATTTTCTTCTCTCTACTTCTGAGCTCTGTAGAAATCTTTTCGCCGACAACTACTTTGAATTGTCCTGAAACAGAAGGAAGATGAAAGATTCTTTAATCTTACTGTTCGTCAATCGTTTCTTTAATCGTTTTTCTCGTAAACATTAGGAGTTAGAATTTAGGTTTTACTTTACCAGGGATACATGTAAAACCTAGAGCGATCCATTGATCCATTTCAAATACTGAAACGTTAGGAAGACGAAGGATTCTTTAATCTGAACTATTCATCACTCGATTTTCCCTAAGTTCGGTAAATCCACAAGCAGTTTCGTAAACATTAGGAGTTCGGATTTAGGATGGACACTCGTAAAACCTAGAGCGAATTTATGGATCCATTTCGATTTCCGTTTAAGTTGAGTGGAGTGGAGTGATTCAATTATCGATTACGAGACGAATTTCTGTTTGTTCTGCAGAGAAATTATAAATTGTCGATCCATTCAAAAAGCCACAAAAGGAACCGTTTCCCCCTTGTGAGACCAAGCATATTCCAAAACCAAACTCGCATGAACTACCCTGCGATTTTAAACGCAACATTGAGAAGTCCAAAGGGATTCGGACCAGCTCCAAGGAAGAAGAAGAAGAATAAGAAAACAAAAGGAGAAGAAGGAGAAGAAAGTGAGGATGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGGTGGTGTAATACCAGAAGTAGTGACAAACAGAATGATGAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTTTTCCCATTCTTCTATTACCTGAAAGTTGGTTTGAAGATTGATGTGCCTTCATGGGTGCCAGTCATAGTGTCCTTCTTCTTCTTTGGTTCTGCTCTTTTGGGAGTCAGCTATGGGATTGTTTCCTCTAGTTGGGATCCTTTGAGGGAAGGTTCTCTTTTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGTGGATCTAATAAGAAATAACATTAATTGGGTTTTTTTCTTTTTGGGGTCCTTTCTTTCTGATAAATATTCTGTTTTTCTCCTATCAATGTTATATATGAGAAGTAAGGTAGCTTGTAAACGTATTGAGAAGTGCTTTTTTTCACGTCCGACCATTGC

mRNA sequence

TTCAGATTATAATCTTCCGCCAATTCTAAGCAAAAAATTTCATACCAAAAACCTTATCCTCTTTCAATGGCCACATCCATGGCGTCCGTCTCTGCTTCCCTCAGTGAAGACAAAATGTAGAGACGAACCGACAGTGTTTCAGTTTCAGAGACACATCCTAATGGCCGCCATTGCCGGATCGCTCAACCTTCCTTTTGCGCCTTCAAACCTTCCATCACTTCATATTAAGAGAAATTATAAATTGTCGATCCATTCAAAAAGCCACAAAAGGAACCGTTTCCCCCTTGTGAGACCAAGCATATTCCAAAACCAAACTCGCATGAACTACCCTGCGATTTTAAACGCAACATTGAGAAGTCCAAAGGGATTCGGACCAGCTCCAAGGAAGAAGAAGAAGAATAAGAAAACAAAAGGAGAAGAAGGAGAAGAAAGTGAGGATGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGGTGGTGTAATACCAGAAGTAGTGACAAACAGAATGATGAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTTTTCCCATTCTTCTATTACCTGAAAGTTGGTTTGAAGATTGATGTGCCTTCATGGGTGCCAGTCATAGTGTCCTTCTTCTTCTTTGGTTCTGCTCTTTTGGGAGTCAGCTATGGGATTGTTTCCTCTAGTTGGGATCCTTTGAGGGAAGGTTCTCTTTTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGTGGATCTAATAAGAAATAACATTAATTGGGTTTTTTTCTTTTTGGGGTCCTTTCTTTCTGATAAATATTCTGTTTTTCTCCTATCAATGTTATATATGAGAAGTAAGGTAGCTTGTAAACGTATTGAGAAGTGCTTTTTTTCACGTCCGACCATTGC

Coding sequence (CDS)

ATGGCCGCCATTGCCGGATCGCTCAACCTTCCTTTTGCGCCTTCAAACCTTCCATCACTTCATATTAAGAGAAATTATAAATTGTCGATCCATTCAAAAAGCCACAAAAGGAACCGTTTCCCCCTTGTGAGACCAAGCATATTCCAAAACCAAACTCGCATGAACTACCCTGCGATTTTAAACGCAACATTGAGAAGTCCAAAGGGATTCGGACCAGCTCCAAGGAAGAAGAAGAAGAATAAGAAAACAAAAGGAGAAGAAGGAGAAGAAAGTGAGGATGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGGTGGTGTAATACCAGAAGTAGTGACAAACAGAATGATGAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTTTTCCCATTCTTCTATTACCTGAAAGTTGGTTTGAAGATTGATGTGCCTTCATGGGTGCCAGTCATAGTGTCCTTCTTCTTCTTTGGTTCTGCTCTTTTGGGAGTCAGCTATGGGATTGTTTCCTCTAGTTGGGATCCTTTGAGGGAAGGTTCTCTTTTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGTGGATCTAATAAGAAATAA

Protein sequence

MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAILNATLRSPKGFGPAPRKKKKNKKTKGEEGEESEDEEEEEEEEEEGGVIPEVVTNRMMSRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWQSIWGGGSNKK

Homology

[Close]

BLAST of Tan0018730 vs. ExPASy Swiss-Prot
Match: O49668 (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-56
Identity = 114/165 (69.09%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 50  NQTRMNYPAILNATLRSPKGFGPAPRKKKKNKKTK-GEEGEESEDEEEE----EEEEEEG 109
           N+  ++  A L+AT+ SPKGFGP P+K KK+KK K G + +E +D+E+E    EE+E E 
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 110 GVIPEVVTNRMMSRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 169
           GVIPE+VTNRM+SRMGF+VG+PL IGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 170 LLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWQSIWGGGSNK 210
           L GVSYGIVSSSWDPLREGSLLGWNEA+KNWPVFWQS W     +
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of Tan0018730 vs. ExPASy Swiss-Prot
Match: Q9LTD9 (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-10
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 0


Query: 66  SPKGFGPAPRKKKKNKKTKGEEGEESEDEEEE----EEEEEEGGVIPEVVTNRMMSRMGF 125
           +PK   P  + + ++K   G +G +S    E+    + + E+   IP+ V  RMM R+  
Sbjct: 27  NPKTLYPNNKPRWESKLHAGPKGFQSSRTSEKPGRPDPDPEDDPPIPQEVFERMMGRIVV 86

Query: 126 SVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPLR 185
           SVG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +S++ DP +
Sbjct: 87  SVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAK 146

Query: 186 EGSLLGWNEAQKNWPVFWQ 201
             SL G  EA++NW   W+
Sbjct: 147 TNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of Tan0018730 vs. NCBI nr
Match: XP_023540526.1 (protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.1 bits (884), Expect = 4.2e-91
Identity = 184/213 (86.38%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAIL 60
           MAAIAGSLNLP APS LPSLHI RNY LSI SKSHKRN F L+RPS++QNQTR N+  I+
Sbjct: 1   MAAIAGSLNLPLAPSQLPSLHITRNYNLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPRKKKKNKKTK--GEEGEESEDEEEEEEEEEEG-GVIPEVVTNRMMS 120
           NATLRSPKGFGP PRKKKK KKTK  G+  EESEDEE+EEEEEEE  GVIPEVVTNRM+S
Sbjct: 61  NATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPLREGSLLGWNEAQKNWPVFWQSIWGGGSNKK 211
           DP+REGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Tan0018730 vs. NCBI nr
Match: XP_023005760.1 (protein PAM68, chloroplastic [Cucurbita maxima])

HSP 1 Score: 342.8 bits (878), Expect = 2.1e-90
Identity = 181/213 (84.98%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAIL 60
           MAAI GSLNLP APS LPSLHI R YKLSI SKSHKRN F L+RPS++QNQTR N+  I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRKYKLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPRKKKKNKKTK---GEEGEESEDEEEEEEEEEEGGVIPEVVTNRMMS 120
           NATLRSPKGFGPAPRKKKK KK     G+  EESEDEE+EEEEEE+ GVIPEVVTNRM+S
Sbjct: 61  NATLRSPKGFGPAPRKKKKKKKKTEGGGDGEEESEDEEDEEEEEEDRGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPLREGSLLGWNEAQKNWPVFWQSIWGGGSNKK 211
           DP+REGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Tan0018730 vs. NCBI nr
Match: KAG6596699.1 (Protein PAM68, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028232.1 Protein PAM68, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.0 bits (868), Expect = 3.0e-89
Identity = 181/214 (84.58%), Postives = 191/214 (89.25%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAIL 60
           MAAI GSLNLP APS LPSLHI RNY LSI SKS KRN F L+RPS++QNQTR N+  I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRNYNLSIQSKSQKRNYFSLLRPSLYQNQTRTNHALIV 60

Query: 61  NATLRSPKGFGPAPRKKKKNKKTK----GEEGEESEDEEEEEEEEEEGGVIPEVVTNRMM 120
           NATLRSPKGFGPAPRKKKK KKTK    GEE  E E++EEEEEEEE+ GVIPEVVTNRM+
Sbjct: 61  NATLRSPKGFGPAPRKKKK-KKTKGGGDGEEESEDEEDEEEEEEEEDRGVIPEVVTNRMI 120

Query: 121 SRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPLREGSLLGWNEAQKNWPVFWQSIWGGGSNKK 211
           WDP+REGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 WDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Tan0018730 vs. NCBI nr
Match: XP_022949106.1 (protein PAM68, chloroplastic [Cucurbita moschata])

HSP 1 Score: 338.2 bits (866), Expect = 5.1e-89
Identity = 181/212 (85.38%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAIL 60
           MAAI GSLNLP APS LPSLHI RNY LSI SKS KRN F L+RPS++QNQTR N+  I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRNYNLSIQSKSQKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPRKKKKNKKTKGEEG-EESEDEEEEEEEEEEG-GVIPEVVTNRMMSR 120
           NATLRSPKGFGPAPRKKKK K   G +G EESEDEE+EEEEEEE  GVIPEVVTNRM+SR
Sbjct: 61  NATLRSPKGFGPAPRKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMISR 120

Query: 121 MGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180
           MGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD
Sbjct: 121 MGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180

Query: 181 PLREGSLLGWNEAQKNWPVFWQSIWGGGSNKK 211
           P+REGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 PMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 212

[Close]

BLAST of Tan0018730 vs. NCBI nr
Match: XP_022145390.1 (protein PAM68, chloroplastic [Momordica charantia])

HSP 1 Score: 337.0 bits (863), Expect = 1.1e-88
Identity = 175/209 (83.73%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAIL 60
           MAAIAGSLNLP APSNLPSL IKRN K SIHSKSH+R RFPL+RPSI+QNQTR+N PAIL
Sbjct: 1   MAAIAGSLNLPLAPSNLPSLRIKRNCKFSIHSKSHERIRFPLLRPSIYQNQTRINQPAIL 60

Query: 61  NATLRSPKGFGPAPRKKKKNKKTKGEEGEESEDEEEEEEEEEEGGVIPEVVTNRMMSRMG 120
            ATLRSPKGFGPAP+K+KK K  + +E +E EDE+E+E+EE EGGVIPEVVTNRMMSRMG
Sbjct: 61  RATLRSPKGFGPAPKKRKK-KSQESDEEDEDEDEDEDEDEEAEGGVIPEVVTNRMMSRMG 120

Query: 121 FSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPL 180
           FSVGIPLLIGLLFFPFFYYLKVGLKIDVP+WVP IVSFFFFGSALLGVSYGIVSSSWDP+
Sbjct: 121 FSVGIPLLIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPM 180

Query: 181 REGSLLGWNEAQKNWPVFWQSIWGGGSNK 210
           REGSLLGWNEAQKNWPVFWQSIW     K
Sbjct: 181 REGSLLGWNEAQKNWPVFWQSIWAKSDKK 208

[Close]

BLAST of Tan0018730 vs. ExPASy TrEMBL
Match: A0A6J1KYA4 (protein PAM68, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498663 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.0e-90
Identity = 181/213 (84.98%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAIL 60
           MAAI GSLNLP APS LPSLHI R YKLSI SKSHKRN F L+RPS++QNQTR N+  I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRKYKLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPRKKKKNKKTK---GEEGEESEDEEEEEEEEEEGGVIPEVVTNRMMS 120
           NATLRSPKGFGPAPRKKKK KK     G+  EESEDEE+EEEEEE+ GVIPEVVTNRM+S
Sbjct: 61  NATLRSPKGFGPAPRKKKKKKKKTEGGGDGEEESEDEEDEEEEEEDRGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPLREGSLLGWNEAQKNWPVFWQSIWGGGSNKK 211
           DP+REGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Tan0018730 vs. ExPASy TrEMBL
Match: A0A6J1GB37 (protein PAM68, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452558 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.5e-89
Identity = 181/212 (85.38%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAIL 60
           MAAI GSLNLP APS LPSLHI RNY LSI SKS KRN F L+RPS++QNQTR N+  I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRNYNLSIQSKSQKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPRKKKKNKKTKGEEG-EESEDEEEEEEEEEEG-GVIPEVVTNRMMSR 120
           NATLRSPKGFGPAPRKKKK K   G +G EESEDEE+EEEEEEE  GVIPEVVTNRM+SR
Sbjct: 61  NATLRSPKGFGPAPRKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMISR 120

Query: 121 MGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180
           MGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD
Sbjct: 121 MGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180

Query: 181 PLREGSLLGWNEAQKNWPVFWQSIWGGGSNKK 211
           P+REGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 PMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 212

[Close]

BLAST of Tan0018730 vs. ExPASy TrEMBL
Match: A0A6J1CUC6 (protein PAM68, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014847 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.5e-89
Identity = 175/209 (83.73%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAIL 60
           MAAIAGSLNLP APSNLPSL IKRN K SIHSKSH+R RFPL+RPSI+QNQTR+N PAIL
Sbjct: 1   MAAIAGSLNLPLAPSNLPSLRIKRNCKFSIHSKSHERIRFPLLRPSIYQNQTRINQPAIL 60

Query: 61  NATLRSPKGFGPAPRKKKKNKKTKGEEGEESEDEEEEEEEEEEGGVIPEVVTNRMMSRMG 120
            ATLRSPKGFGPAP+K+KK K  + +E +E EDE+E+E+EE EGGVIPEVVTNRMMSRMG
Sbjct: 61  RATLRSPKGFGPAPKKRKK-KSQESDEEDEDEDEDEDEDEEAEGGVIPEVVTNRMMSRMG 120

Query: 121 FSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPL 180
           FSVGIPLLIGLLFFPFFYYLKVGLKIDVP+WVP IVSFFFFGSALLGVSYGIVSSSWDP+
Sbjct: 121 FSVGIPLLIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPM 180

Query: 181 REGSLLGWNEAQKNWPVFWQSIWGGGSNK 210
           REGSLLGWNEAQKNWPVFWQSIW     K
Sbjct: 181 REGSLLGWNEAQKNWPVFWQSIWAKSDKK 208

[Close]

BLAST of Tan0018730 vs. ExPASy TrEMBL
Match: A0A1S3BKY8 (protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.3e-86
Identity = 178/218 (81.65%), Postives = 189/218 (86.70%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIKRNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAIL 60
           MAAIAGSLNLP APSNLP L IK+N + SIH KS++RN FP  RP+I QNQTR N+P  L
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL 60

Query: 61  NATLRSPKGFGPAPRKKKKNKKTKGE--------EGEESEDEEEEEEEEEEGGVIPEVVT 120
           NATLR PKGFGPAPRKKK  KKTKGE        E EE ++EEEE+ EEEEGGVIPEVVT
Sbjct: 61  NATLRRPKGFGPAPRKKKM-KKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT 120

Query: 121 NRMMSRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRMMSRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPLREGSLLGWNEAQKNWPVFWQSIWGGGSNKK 211
           VSSSWDP+REGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIW-GGSNKK 216

[Close]

BLAST of Tan0018730 vs. ExPASy TrEMBL
Match: A0A1S3BKQ0 (protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.2e-85
Identity = 178/219 (81.28%), Postives = 189/219 (86.30%), Query Frame = 0


Query: 1   MAAIAGSLNLPFAPSNLPSLHIK-RNYKLSIHSKSHKRNRFPLVRPSIFQNQTRMNYPAI 60
           MAAIAGSLNLP APSNLP L IK +N + SIH KS++RN FP  RP+I QNQTR N+P  
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRSPKGFGPAPRKKKKNKKTKGE--------EGEESEDEEEEEEEEEEGGVIPEVV 120
           LNATLR PKGFGPAPRKKK  KKTKGE        E EE ++EEEE+ EEEEGGVIPEVV
Sbjct: 61  LNATLRRPKGFGPAPRKKKM-KKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVV 120

Query: 121 TNRMMSRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180
           TNRMMSRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG
Sbjct: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180

Query: 181 IVSSSWDPLREGSLLGWNEAQKNWPVFWQSIWGGGSNKK 211
           IVSSSWDP+REGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIW-GGSNKK 217

[Close]

BLAST of Tan0018730 vs. TAIR 10
Match: AT4G19100.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-57
Identity = 114/165 (69.09%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 50  NQTRMNYPAILNATLRSPKGFGPAPRKKKKNKKTK-GEEGEESEDEEEE----EEEEEEG 109
           N+  ++  A L+AT+ SPKGFGP P+K KK+KK K G + +E +D+E+E    EE+E E 
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 110 GVIPEVVTNRMMSRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 169
           GVIPE+VTNRM+SRMGF+VG+PL IGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 170 LLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWQSIWGGGSNK 210
           L GVSYGIVSSSWDPLREGSLLGWNEA+KNWPVFWQS W     +
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of Tan0018730 vs. TAIR 10
Match: AT5G52780.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-11
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 0


Query: 66  SPKGFGPAPRKKKKNKKTKGEEGEESEDEEEE----EEEEEEGGVIPEVVTNRMMSRMGF 125
           +PK   P  + + ++K   G +G +S    E+    + + E+   IP+ V  RMM R+  
Sbjct: 27  NPKTLYPNNKPRWESKLHAGPKGFQSSRTSEKPGRPDPDPEDDPPIPQEVFERMMGRIVV 86

Query: 126 SVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPLR 185
           SVG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +S++ DP +
Sbjct: 87  SVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAK 146

Query: 186 EGSLLGWNEAQKNWPVFWQ 201
             SL G  EA++NW   W+
Sbjct: 147 TNSLFGLKEAKENWVEMWK 165

The following BLAST results are available for this feature:

BLAST of Tan0018730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49668	1.6e-56	69.09	Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1	[more]
Q9LTD9	8.4e-10	34.53	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ...	[more]

BLAST of Tan0018730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540526.1	4.2e-91	86.38	protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023005760.1	2.1e-90	84.98	protein PAM68, chloroplastic [Cucurbita maxima]	[more]
KAG6596699.1	3.0e-89	84.58	Protein PAM68, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022949106.1	5.1e-89	85.38	protein PAM68, chloroplastic [Cucurbita moschata]	[more]
XP_022145390.1	1.1e-88	83.73	protein PAM68, chloroplastic [Momordica charantia]	[more]

BLAST of Tan0018730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYA4	1.0e-90	84.98	protein PAM68, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498663 PE=4 SV...	[more]
A0A6J1GB37	2.5e-89	85.38	protein PAM68, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452558 PE=4 ...	[more]
A0A6J1CUC6	5.5e-89	83.73	protein PAM68, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014847 PE=4...	[more]
A0A1S3BKY8	3.3e-86	81.65	protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
A0A1S3BKQ0	8.2e-85	81.28	protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]

BLAST of Tan0018730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19100.1	1.1e-57	69.09	Protein of unknown function (DUF3464)	[more]
AT5G52780.1	6.0e-11	34.53	Protein of unknown function (DUF3464)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	PAM68-like	PFAM	PF11947	DUF3464	coord: 73..201 e-value: 3.2E-51 score: 173.0
IPR021855	PAM68-like	PANTHER	PTHR34575	PROTEIN PAM68, CHLOROPLASTIC	coord: 28..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..108
None	No IPR available	PANTHER	PTHR34575:SF1	PROTEIN PAM68, CHLOROPLASTIC	coord: 28..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018730.1	Tan0018730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane