Tan0018688 (gene) Snake gourd v1

Overview


Name	Tan0018688
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein RALF-like 10
Location	LG09: 42999919 .. 43000134 (-)
RNA-Seq Expression	Tan0018688
Synteny	Tan0018688

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGTCATGGCTCATTTGTTTAGTTCTTATTAGCATGTTGGTGACAAGAAAAGAAGTAGCAGCAGACAGAACTTATCTTAAACTATTGGATTGCAACAACCCAAACCCACCACCAAGTTGTTCTTCACCGAATGGAGAATGTTCTACACCTGTTTCTGCTAATGCCTATACTCGAGGTTGCTCTGCCATCAATCGTTGTCGTGGAGGATGA

mRNA sequence

ATGAAGCAGTCATGGCTCATTTGTTTAGTTCTTATTAGCATGTTGGTGACAAGAAAAGAAGTAGCAGCAGACAGAACTTATCTTAAACTATTGGATTGCAACAACCCAAACCCACCACCAAGTTGTTCTTCACCGAATGGAGAATGTTCTACACCTGTTTCTGCTAATGCCTATACTCGAGGTTGCTCTGCCATCAATCGTTGTCGTGGAGGATGA

Coding sequence (CDS)

ATGAAGCAGTCATGGCTCATTTGTTTAGTTCTTATTAGCATGTTGGTGACAAGAAAAGAAGTAGCAGCAGACAGAACTTATCTTAAACTATTGGATTGCAACAACCCAAACCCACCACCAAGTTGTTCTTCACCGAATGGAGAATGTTCTACACCTGTTTCTGCTAATGCCTATACTCGAGGTTGCTCTGCCATCAATCGTTGTCGTGGAGGATGA

Protein sequence

MKQSWLICLVLISMLVTRKEVAADRTYLKLLDCNNPNPPPSCSSPNGECSTPVSANAYTRGCSAINRCRGG

Homology

[Close]

BLAST of Tan0018688 vs. ExPASy Swiss-Prot
Match: O64466 (Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYT 62
          ++WLICL++I   V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+
Sbjct: 2  KAWLICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEYS 61

Query: 63 RGCSAINRCR 70
          RGCS I+RCR
Sbjct: 62 RGCSKIHRCR 70

[Close]

BLAST of Tan0018688 vs. ExPASy Swiss-Prot
Match: F4ISE2 (Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYT 62
          ++W+ICL++I   V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+
Sbjct: 2  KAWVICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEYS 61

Query: 63 RGCSAINRCR 70
          RGCS I+RCR
Sbjct: 62 RGCSKIHRCR 70

[Close]

BLAST of Tan0018688 vs. ExPASy Swiss-Prot
Match: F4ISE1 (Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-06
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYT 62
          ++W+I L++I  +V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+
Sbjct: 2  KAWVIGLLVICAVVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYS 61

Query: 63 RGCSAINRCR 70
          RGCS I+RCR
Sbjct: 62 RGCSKIHRCR 70

[Close]

BLAST of Tan0018688 vs. ExPASy Swiss-Prot
Match: O65919 (Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.4e-06
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 6  LICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYTRGC 65
          +ICL++I   V    V + R +L    +  C  PNPPP C  P  +   P  AN Y RGC
Sbjct: 5  VICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEYRRGC 64

Query: 66 SAINRCR 70
          S I RC+
Sbjct: 65 SKITRCK 71

[Close]

BLAST of Tan0018688 vs. ExPASy Swiss-Prot
Match: Q9LSG0 (Protein RALF-like 25 OS=Arabidopsis thaliana OX=3702 GN=RALFL25 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.4e-06
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1  MKQSWLICLVLISMLVTRKEVAAD--RTYLKLLDCNNPNPPPSCSSPNGECSTPVSANAY 60
          MK   +I LV+ S+L+  +  A D  R YL L  C  PN PP C     +  TPV  N Y
Sbjct: 1  MKTFMIILLVICSILIVGRVEANDNKRKYLLLDPCLRPNAPPGCHRQPYKPRTPV--NVY 60

Query: 61 TRGCSAINRCR 70
          +RGC+ INRCR
Sbjct: 61 SRGCTTINRCR 69

[Close]

BLAST of Tan0018688 vs. NCBI nr
Match: XP_038877580.1 (protein RALF-like 11 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 2.9e-12
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLKLLD-CNNPNPPPSCSSPNGECSTPVSANAYTRG 62
          +SWLIC+V ISMLV    VAA++ YL+ LD CN PNPPP+CS    E    V AN Y RG
Sbjct: 2  KSWLICVVFISMLVVGPGVAAEKKYLQFLDPCNQPNPPPTCS----EVKEQVEANPYNRG 61

Query: 63 CSAINRCRGG 72
          CSAI+RCRGG
Sbjct: 62 CSAIHRCRGG 67

[Close]

BLAST of Tan0018688 vs. NCBI nr
Match: XP_022947821.1 (protein RALF-like 10 [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 4.7e-10
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLKLLD-CNNPNPPPSCSSPNGECSTPVSANAYTRG 62
          +SWLICLVLI MLV  ++VA++  +LK  D C  PNPPP CS  N      V AN Y RG
Sbjct: 2  RSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIGNA-----VPANPYRRG 61

Query: 63 CSAINRCRGG 72
          CS I RCRGG
Sbjct: 62 CSKITRCRGG 66

[Close]

BLAST of Tan0018688 vs. NCBI nr
Match: XP_023533089.1 (protein RALF-like 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLKLLD-CNNPNPPPSCSSPNGECSTPVSANAYTRG 62
          +SWLIC+VLISMLV  +EVA++  +LK  D C  PNPP  CS  N      V AN Y RG
Sbjct: 2  RSWLICIVLISMLVVSQEVASETKFLKFPDPCQQPNPPLGCSIGNA-----VPANPYRRG 61

Query: 63 CSAINRCRGG 72
          CS I RCRGG
Sbjct: 62 CSKITRCRGG 66

[Close]

BLAST of Tan0018688 vs. NCBI nr
Match: KAE8637268.1 (hypothetical protein CSA_017684 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLKLLD-CNNPNPPPSCSSPNGECSTPVSANAYTRG 62
          +SWLIC+V ISMLV  +EV A   +LK  + C+ P+PPPSCSS   +       N Y RG
Sbjct: 2  KSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSS---KVKDHAPTNPYDRG 61

Query: 63 CSAINRCRG 71
          CSAI+RCRG
Sbjct: 62 CSAIHRCRG 67

[Close]

BLAST of Tan0018688 vs. NCBI nr
Match: KAG7020863.1 (hypothetical protein SDJN02_17551, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 7  ICLVLISMLVTRKEVAADR------TYLKLLDCNNPNPPPSCSSPNGECSTPVSANAYTR 66
          ICL LI+ML+T ++V  ++       YLK L+C++PNPP  CS    +    V AN Y R
Sbjct: 6  ICLALITMLMTSQQVMTNQEATSQIKYLKHLECHHPNPPAHCSLSGVKGYQHVPANPYDR 65

Query: 67 GCSAINRCRGG 72
          GCSAI+RCRGG
Sbjct: 66 GCSAIHRCRGG 76

[Close]

BLAST of Tan0018688 vs. ExPASy TrEMBL
Match: A0A0A0LI94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLKLLD-CNNPNPPPSCSSPNGECSTPVSANAYTRG 62
          +SWLICL LI MLV  +EVAA+  +LK +D CN P+PPP+C  PN +      AN Y R 
Sbjct: 2  KSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTC--PNRD--KVEEANPYNRD 61

Query: 63 CSAINRCRGG 72
          CSAINRCRGG
Sbjct: 62 CSAINRCRGG 67

[Close]

BLAST of Tan0018688 vs. ExPASy TrEMBL
Match: A0A6J1G7J2 (protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLKLLD-CNNPNPPPSCSSPNGECSTPVSANAYTRG 62
          +SWLICLVLI MLV  ++VA++  +LK  D C  PNPPP CS  N      V AN Y RG
Sbjct: 2  RSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIGNA-----VPANPYRRG 61

Query: 63 CSAINRCRGG 72
          CS I RCRGG
Sbjct: 62 CSKITRCRGG 66

[Close]

BLAST of Tan0018688 vs. ExPASy TrEMBL
Match: A0A0A0M0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLKLLD-CNNPNPPPSCSSPNGECSTPVSANAYTRG 62
          +SWLIC+V ISMLV  +EV A   +LK  + C+ P+PPPSCSS   +       N Y RG
Sbjct: 2  KSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSS---KVKDHAPTNPYDRG 61

Query: 63 CSAINRCRG 71
          CSAI+RCRG
Sbjct: 62 CSAIHRCRG 67

[Close]

BLAST of Tan0018688 vs. ExPASy TrEMBL
Match: B2Y4P6 (Putative rapid alkalinization factor (RALF) family protein OS=Arabidopsis halleri subsp. halleri OX=81971 GN=7C17.3 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYT 62
          ++W+ICL++IS  VT + V + R Y++   +  C  PNPPP C  P  E   P   N Y+
Sbjct: 2  KAWVICLLVISAAVTAEPVES-RKYIEDGAINKCAGPNPPPGCHPPGAEDKKPTPVNEYS 61

Query: 63 RGCSAINRCR 70
          RGCS I+RCR
Sbjct: 62 RGCSKIHRCR 70

[Close]

BLAST of Tan0018688 vs. ExPASy TrEMBL
Match: D7L1Y4 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_900339 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYT 62
          ++W+ICL++IS  VT + V + R Y++   +  C  PNPPP C  P  E   P   N Y+
Sbjct: 2  KAWVICLLVISAAVTAEPVES-RKYIEDGVINKCAGPNPPPGCHPPGAEDKKPTPVNEYS 61

Query: 63 RGCSAINRCR 70
          RGCS I+RCR
Sbjct: 62 RGCSKIHRCR 70

[Close]

BLAST of Tan0018688 vs. TAIR 10
Match: AT2G19030.1 (ralf-like 11 )

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-09
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYT 62
          ++WLICL++I   V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+
Sbjct: 2  KAWLICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEYS 61

Query: 63 RGCSAINRCR 70
          RGCS I+RCR
Sbjct: 62 RGCSKIHRCR 70

[Close]

BLAST of Tan0018688 vs. TAIR 10
Match: AT2G19045.1 (RALF-like 13 )

HSP 1 Score: 56.6 bits (135), Expect = 9.3e-09
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYT 62
          ++W+ICL++I   V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+
Sbjct: 2  KAWVICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEYS 61

Query: 63 RGCSAINRCR 70
          RGCS I+RCR
Sbjct: 62 RGCSKIHRCR 70

[Close]

BLAST of Tan0018688 vs. TAIR 10
Match: AT2G19040.1 (RALF-like 12 )

HSP 1 Score: 53.1 bits (126), Expect = 1.0e-07
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 3  QSWLICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYT 62
          ++W+I L++I  +V  + V + R Y++   +  C  PNPPP C+ P  E   P   N Y+
Sbjct: 2  KAWVIGLLVICAVVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYS 61

Query: 63 RGCSAINRCR 70
          RGCS I+RCR
Sbjct: 62 RGCSKIHRCR 70

[Close]

BLAST of Tan0018688 vs. TAIR 10
Match: AT2G19020.1 (ralf-like 10 )

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 6  LICLVLISMLVTRKEVAADRTYLK---LLDCNNPNPPPSCSSPNGECSTPVSANAYTRGC 65
          +ICL++I   V    V + R +L    +  C  PNPPP C  P  +   P  AN Y RGC
Sbjct: 5  VICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEYRRGC 64

Query: 66 SAINRCR 70
          S I RC+
Sbjct: 65 SKITRCK 71

[Close]

BLAST of Tan0018688 vs. TAIR 10
Match: AT3G25165.1 (ralf-like 25 )

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1  MKQSWLICLVLISMLVTRKEVAAD--RTYLKLLDCNNPNPPPSCSSPNGECSTPVSANAY 60
          MK   +I LV+ S+L+  +  A D  R YL L  C  PN PP C     +  TPV  N Y
Sbjct: 1  MKTFMIILLVICSILIVGRVEANDNKRKYLLLDPCLRPNAPPGCHRQPYKPRTPV--NVY 60

Query: 61 TRGCSAINRCR 70
          +RGC+ INRCR
Sbjct: 61 SRGCTTINRCR 69

The following BLAST results are available for this feature:

BLAST of Tan0018688 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64466	2.7e-08	42.86	Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1	[more]
F4ISE2	1.3e-07	41.43	Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1	[more]
F4ISE1	1.5e-06	40.00	Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1	[more]
O65919	9.4e-06	40.30	Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1	[more]
Q9LSG0	9.4e-06	45.07	Protein RALF-like 25 OS=Arabidopsis thaliana OX=3702 GN=RALFL25 PE=3 SV=1	[more]

BLAST of Tan0018688 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877580.1	2.9e-12	61.43	protein RALF-like 11 [Benincasa hispida]	[more]
XP_022947821.1	4.7e-10	57.14	protein RALF-like 10 [Cucurbita moschata]	[more]
XP_023533089.1	1.8e-09	57.14	protein RALF-like 10 [Cucurbita pepo subsp. pepo]	[more]
KAE8637268.1	7.4e-08	53.62	hypothetical protein CSA_017684 [Cucumis sativus]	[more]
KAG7020863.1	1.1e-06	49.30	hypothetical protein SDJN02_17551, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Tan0018688 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI94	1.3e-10	58.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1	[more]
A0A6J1G7J2	2.3e-10	57.14	protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1	[more]
A0A0A0M0X3	3.6e-08	53.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1	[more]
B2Y4P6	3.4e-06	44.29	Putative rapid alkalinization factor (RALF) family protein OS=Arabidopsis haller...	[more]
D7L1Y4	3.4e-06	44.29	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]

BLAST of Tan0018688 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19030.1	1.9e-09	42.86	ralf-like 11	[more]
AT2G19045.1	9.3e-09	41.43	RALF-like 13	[more]
AT2G19040.1	1.0e-07	40.00	RALF-like 12	[more]
AT2G19020.1	6.7e-07	40.30	ralf-like 10	[more]
AT3G25165.1	6.7e-07	45.07	ralf-like 25	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 32..70 e-value: 1.0E-7 score: 32.8
None	No IPR available	PANTHER	PTHR34270:SF5	PROTEIN RALF-LIKE 10-RELATED	coord: 3..71
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 3..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018688.1	Tan0018688.1	mRNA