Tan0018675 (gene) Snake gourd v1

Overview


Name	Tan0018675
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	LG07: 12046598 .. 12048084 (-)
RNA-Seq Expression	Tan0018675
Synteny	Tan0018675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGCTTTGTTCGTTGTGGCTGCGCCGGTGCCCGTTGTGGACTCACCGGCGTGTCCATGTTCGTGTTTGGACTCATCGCCGGTTGCCAACATGAGTCTTAGAAGTGGTGGAGATTTGGTTTTGAGAAGGAAATCTAAGGCTAAGAATCACTTGACCGTGTCTGGATCGGTGGATTTGAGAAGTTCGTTCGTGAATTCCGGCGGCGAGTGGCGGCTTTCCGCCGTTGGTGGCCACCGGAGCCGGAGGAACCAACGGAGGAATAGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGACAGTTTTGATGATGTGAAAATGGTATGAATATGTAGAATATGATATGACTTTTCTTCAATGCAAAATTTCTTGATCTCTTTTGATTGATCATTGTTATATAATGCTGGTCTCTTCTTCTGCTTCCTGAATGTTGAATGTTTTTGGAACTTGGATTCTGCATTTTGATAAATAAAGTCATCTGAAAAGAGAGCAAGGAAAAAAAAAAAAAACAAGAGAACTTGTTTGTTTGAGTCTCCCATTTTGATAAATAATAGATGTCTTGTTCTCTCTCCTCTGTTTCTTCAGCAGAGTAAGTTCTATAGAATGTATTTAACATTATTCTAAGCTTACTAGAGGCTTTCTACTTGCAGCAAATACAAAATTATTTCACATACAAGGCTGTGAAGACAGTTCTGAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATGAGTAAGTGAAGGCTTTCACCTGAGTTTTAATCAGGTGAACTTGTTAAGACTGCCAATGTAAATGCTTAGATTATCCTCAACTTTCTGGAAATCAAAACAGTGTTTCCAGAACATATTCCTTTTCCTAAACTAATCTTGAATTTCATTTTTCTACATCAACAGTTTTGTTGTAAATCACAAACCTGGGGATGGGAAGCGTTTCATCCGCACCCTCGTAAAGGTAGCATCGAAATCTCTAGATTTTTCAGATCTATTTTCTAACACTCAACTATCTAAAAATAGTCCAACTTGAACATACTCAACTGATTAAAACATGATATCTTCGATAAAAAAGGGAGAGGTTCAAATCTCCACATTCACAGGTAGAACTATAAAAAGTCTAAAACAGAGACTTATCTATTTGAGCTACATGGAAGTTATGTAAGTAATTGAGTATTGAACAATAAGATATTGAATGTGTATGTATATGATTAACAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGGTAAGAAGAAACTTGGTATTTAGAAGACAATTTCTTTGTTTGGAGGCATTGTAAGAACACATATTGATTGTAATTTTCTGTTGTTGCTTAGAAATGTTCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGACGACTAG

mRNA sequence

ATGGTGGGAGCTTTGTTCGTTGTGGCTGCGCCGGTGCCCGTTGTGGACTCACCGGCGTGTCCATGTTCGTGTTTGGACTCATCGCCGGTTGCCAACATGAGTCTTAGAAGTGGTGGAGATTTGGTTTTGAGAAGGAAATCTAAGGCTAAGAATCACTTGACCGTGTCTGGATCGGTGGATTTGAGAAGTTCGTTCGTGAATTCCGGCGGCGAGTGGCGGCTTTCCGCCGTTGGTGGCCACCGGAGCCGGAGGAACCAACGGAGGAATAGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGACAGTTTTGATGATGTGAAAATGCAAATACAAAATTATTTCACATACAAGGCTGTGAAGACAGTTCTGAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATGATTTTGTTGTAAATCACAAACCTGGGGATGGGAAGCGTTTCATCCGCACCCTCGTAAAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGGTAAGAAGAAACTTGGTATTTAGAAGACAATTTCTTTGTTTGGAGGCATTAAATGTTCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGACGACTAG

Coding sequence (CDS)

ATGGTGGGAGCTTTGTTCGTTGTGGCTGCGCCGGTGCCCGTTGTGGACTCACCGGCGTGTCCATGTTCGTGTTTGGACTCATCGCCGGTTGCCAACATGAGTCTTAGAAGTGGTGGAGATTTGGTTTTGAGAAGGAAATCTAAGGCTAAGAATCACTTGACCGTGTCTGGATCGGTGGATTTGAGAAGTTCGTTCGTGAATTCCGGCGGCGAGTGGCGGCTTTCCGCCGTTGGTGGCCACCGGAGCCGGAGGAACCAACGGAGGAATAGGAGGCTTGTTGTTGTCAATGAATTTGCAGGGCAGTATGAGGACAGTTTTGATGATGTGAAAATGCAAATACAAAATTATTTCACATACAAGGCTGTGAAGACAGTTCTGAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATGATTTTGTTGTAAATCACAAACCTGGGGATGGGAAGCGTTTCATCCGCACCCTCGTAAAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGGTAAGAAGAAACTTGGTATTTAGAAGACAATTTCTTTGTTTGGAGGCATTAAATGTTCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGACGACTAG

Protein sequence

MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVDLRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD

Homology

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BLAST of Tan0018675 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.1e-50
Identity = 122/236 (51.69%), Postives = 152/236 (64.41%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRK---SKAKNHLTVSG 60
           MV A FVV +  PV+DS + PC CLD+               +RRK    KA+N      
Sbjct: 1   MVSAWFVVGS--PVMDSSSSPCLCLDAHTTG----------TIRRKKILGKARN------ 60

Query: 61  SVDLRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNE-FAGQYEDSFDDVKMQIQNY 120
            ++L SSF  S   +RLS      SR   R++++L++VNE  AG Y+D+F DV+ QI NY
Sbjct: 61  -LELGSSFTGSRIVFRLSP--KRVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNY 120

Query: 121 FTYKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLH 180
           FTYKAV+TVL+QLYEMNP QY WFY+ ++ ++P DGKRF+R L KE Q+LAERVMITRLH
Sbjct: 121 FTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLH 180

Query: 181 LYNKWVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           LY KW+K            C      H +IY+EISDENL LMRERLMETVIWPSDD
Sbjct: 181 LYGKWIK-----------KC-----DHGKIYQEISDENLALMRERLMETVIWPSDD 199

[Close]

BLAST of Tan0018675 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 108 DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLA 167
           D    +Q+Y TY+A++TVL QL E NP    W ++F    K  DG+++I  L  EK DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAG-KVQDGEKYIEELFLEKPDLA 68

Query: 168 ERVMITRLHL 178
            R+M  R H+
Sbjct: 69  LRIMTVREHI 77

[Close]

BLAST of Tan0018675 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.3e-07
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 108 DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLA 167
           D    +Q+Y TY+A+ TVL QL E NP    W + F V  K  DG+ +++ L +E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSVG-KVQDGEAYVKELFREQPDLA 68

Query: 168 ERVMITRLHL 178
            R+M  R H+
Sbjct: 69  LRIMTVREHI 77

[Close]

BLAST of Tan0018675 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 115 NYFTYKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITR 174
           +Y TY+AV+TV+ QL E +P +  W + F       DG+R++  L +E+ DL  R++  R
Sbjct: 16  SYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVR 75

Query: 175 LHL 178
            HL
Sbjct: 76  EHL 78

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BLAST of Tan0018675 vs. NCBI nr
Match: XP_023512052.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96
Identity = 192/232 (82.76%), Postives = 197/232 (84.91%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGALFV  A  PV+DSP CPC CLDSSPV NMSLRS GDLVL R+SKAK+HL VS  VD
Sbjct: 1   MVGALFVAGA--PVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVNSG EW+LSA GGHR RRNQRRNRRLVVVNEFAGQYE+SFDDVKMQI NYFTYK
Sbjct: 61  LRSSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFYDFVVNHKP DGKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of Tan0018675 vs. NCBI nr
Match: XP_022944576.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 360.1 bits (923), Expect = 1.4e-95
Identity = 191/232 (82.33%), Postives = 196/232 (84.48%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGAL V  A  PV+DSP CPC CLDSSPV NMSLRS GDLVL R+SKAK+HL VS  VD
Sbjct: 1   MVGALCVAGA--PVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVNSG EW+LSA GGHR RRNQRRNRRLVVVNEFAGQYE+SFDDVKMQI NYFTYK
Sbjct: 61  LRSSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFYDFVVNHKP DGKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of Tan0018675 vs. NCBI nr
Match: KAG7010270.1 (Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357.1 bits (915), Expect = 1.2e-94
Identity = 190/232 (81.90%), Postives = 195/232 (84.05%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGAL V  A  PV+DSP CPC CLDSSPV NMSLRS GDLVL R+SKAK+HL VS  VD
Sbjct: 1   MVGALCVAGA--PVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSQLVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVNSG EW+LSA GGHR RRNQRRN RLVVVNEFAGQYE+SFDDVKMQI NYFTYK
Sbjct: 61  LRSSFVNSGSEWQLSASGGHRRRRNQRRNWRLVVVNEFAGQYEESFDDVKMQILNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFYDFVVNHKP DGKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of Tan0018675 vs. NCBI nr
Match: XP_038902700.1 (chaperonin-like RbcX protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 354.0 bits (907), Expect = 9.9e-94
Identity = 191/232 (82.33%), Postives = 197/232 (84.91%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGALFVV A  PVVDSP CP  C DSSPV   SLRSGGDLVL+RKS   +HL VS SVD
Sbjct: 1   MVGALFVVGA--PVVDSPPCPSLCSDSSPVTITSLRSGGDLVLQRKS---SHLAVSKSVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVNS GEWRLSA GG+RSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK
Sbjct: 61  LRSSFVNSAGEWRLSASGGNRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFY+FVVNHKPG+GKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAE+YKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEMYKEISDENLELMRERLMETVIWPSDD 211

[Close]

BLAST of Tan0018675 vs. NCBI nr
Match: KAA0041415.1 (RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 350.9 bits (899), Expect = 8.4e-93
Identity = 189/232 (81.47%), Postives = 197/232 (84.91%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGALFVV A  PV+DSP  PC   DSSPV NMSLRSGGDLVL+RKSK K++ TVS SVD
Sbjct: 1   MVGALFVVGA--PVIDSPP-PCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVN G EW+LSA G  RSRRNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYK
Sbjct: 61  LRSSFVNFGDEWQLSAGGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFY+FVVNHKPG+GKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Tan0018675 vs. ExPASy TrEMBL
Match: A0A6J1FUS7 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448989 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.7e-96
Identity = 191/232 (82.33%), Postives = 196/232 (84.48%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGAL V  A  PV+DSP CPC CLDSSPV NMSLRS GDLVL R+SKAK+HL VS  VD
Sbjct: 1   MVGALCVAGA--PVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVNSG EW+LSA GGHR RRNQRRNRRLVVVNEFAGQYE+SFDDVKMQI NYFTYK
Sbjct: 61  LRSSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFYDFVVNHKP DGKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of Tan0018675 vs. ExPASy TrEMBL
Match: A0A5A7TJ10 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00620 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 4.1e-93
Identity = 189/232 (81.47%), Postives = 197/232 (84.91%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGALFVV A  PV+DSP  PC   DSSPV NMSLRSGGDLVL+RKSK K++ TVS SVD
Sbjct: 1   MVGALFVVGA--PVIDSPP-PCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVN G EW+LSA G  RSRRNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYK
Sbjct: 61  LRSSFVNFGDEWQLSAGGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFY+FVVNHKPG+GKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Tan0018675 vs. ExPASy TrEMBL
Match: A0A0A0KX19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 9.1e-93
Identity = 190/232 (81.90%), Postives = 198/232 (85.34%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGALFVV A  PVVDS   PC   DSSPV NMSLRSGGDLVL+RKSKAK++LTVS SVD
Sbjct: 1   MVGALFVVGA--PVVDS-LPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVN G EW+LSA GG +S+RNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK
Sbjct: 61  LRSSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFY+FVVNHKPG+GKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Tan0018675 vs. ExPASy TrEMBL
Match: A0A5D3BAI6 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001050 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.2e-92
Identity = 188/232 (81.03%), Postives = 197/232 (84.91%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGALFVV A  PV+DSP  PC   DSSPV NMSLRSGGDLVL+RKSK K++ TVS SVD
Sbjct: 1   MVGALFVVGA--PVIDSPP-PCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVN G EW+LSA G  +SRRNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYK
Sbjct: 61  LRSSFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFY+FVVNHKPG+GKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Tan0018675 vs. ExPASy TrEMBL
Match: A0A1S3BNA7 (uncharacterized protein LOC103491510 OS=Cucumis melo OX=3656 GN=LOC103491510 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.2e-92
Identity = 188/232 (81.03%), Postives = 197/232 (84.91%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRKSKAKNHLTVSGSVD 60
           MVGALFVV A  PV+DSP  PC   DSSPV NMSLRSGGDLVL+RKSK K++ TVS SVD
Sbjct: 1   MVGALFVVGA--PVIDSPP-PCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVD 60

Query: 61  LRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYK 120
           LRSSFVN G EW+LSA G  +SRRNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYK
Sbjct: 61  LRSSFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYK 120

Query: 121 AVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYNK 180
           AVKTVLNQLYEMNPTQYRWFY+FVVNHKPG+GKRFIRTLVKEKQDLAERVMITRLHLYNK
Sbjct: 121 AVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNK 180

Query: 181 WVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           WVK            C      HAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 WVK-----------KC-----DHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Tan0018675 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 198.4 bits (503), Expect = 6.5e-51
Identity = 122/236 (51.69%), Postives = 152/236 (64.41%), Query Frame = 0


Query: 1   MVGALFVVAAPVPVVDSPACPCSCLDSSPVANMSLRSGGDLVLRRK---SKAKNHLTVSG 60
           MV A FVV +  PV+DS + PC CLD+               +RRK    KA+N      
Sbjct: 1   MVSAWFVVGS--PVMDSSSSPCLCLDAHTTG----------TIRRKKILGKARN------ 60

Query: 61  SVDLRSSFVNSGGEWRLSAVGGHRSRRNQRRNRRLVVVNE-FAGQYEDSFDDVKMQIQNY 120
            ++L SSF  S   +RLS      SR   R++++L++VNE  AG Y+D+F DV+ QI NY
Sbjct: 61  -LELGSSFTGSRIVFRLSP--KRVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNY 120

Query: 121 FTYKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMITRLH 180
           FTYKAV+TVL+QLYEMNP QY WFY+ ++ ++P DGKRF+R L KE Q+LAERVMITRLH
Sbjct: 121 FTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLH 180

Query: 181 LYNKWVKVRRNLVFRRQFLCLEALNVHAEIYKEISDENLELMRERLMETVIWPSDD 233
           LY KW+K            C      H +IY+EISDENL LMRERLMETVIWPSDD
Sbjct: 181 LYGKWIK-----------KC-----DHGKIYQEISDENLALMRERLMETVIWPSDD 199

The following BLAST results are available for this feature:

BLAST of Tan0018675 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	9.1e-50	51.69	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44212	3.3e-07	42.86	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
O86418	7.3e-07	41.43	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q8DIS6	1.6e-06	38.10	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]

BLAST of Tan0018675 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512052.1	1.6e-96	82.76	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022944576.1	1.4e-95	82.33	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]	[more]
KAG7010270.1	1.2e-94	81.90	Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. arg...	[more]
XP_038902700.1	9.9e-94	82.33	chaperonin-like RbcX protein 2, chloroplastic [Benincasa hispida]	[more]
KAA0041415.1	8.4e-93	81.47	RcbX domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0018675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUS7	6.7e-96	82.33	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7TJ10	4.1e-93	81.47	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0KX19	9.1e-93	81.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1	[more]
A0A5D3BAI6	1.2e-92	81.03	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BNA7	1.2e-92	81.03	uncharacterized protein LOC103491510 OS=Cucumis melo OX=3656 GN=LOC103491510 PE=...	[more]

BLAST of Tan0018675 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	6.5e-51	51.69	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 111..188 e-value: 3.8E-18 score: 65.8
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..232
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 95..232 e-value: 1.6E-40 score: 139.9
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 101..232
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018675.1	Tan0018675.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone