Tan0018618 (gene) Snake gourd v1

Overview
NameTan0018618
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionserine/threonine-protein phosphatase 7 long form homolog
LocationLG02: 83492850 .. 83494972 (-)
RNA-Seq ExpressionTan0018618
SyntenyTan0018618
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCACTCGAAGTGACGCATTACGTTCAACCCTCTTGTCAACGAGTCAACGCATCAAAAAAGTTTAGAAATAACGATACGACGTTTAAACACCGTTAGATTGTCGTTGAAATGCGTCAGTCAAACTGACGCATTCAGTTCGAAAACACGCCTATTGACGCGTCACTTCAGCTAACGCCGAAATGACGGATGACGCGTCTAATGCAGAAATGACTGTTGAAGCAAGTTGATGGTATGAATGCGTCTTTTTACAGCAGACACATTCAACTTTAATTTGATTCCCCCATCTCCCGAGGTCAGACGCATTTTCGAGGACCATTAATGTAAAAAGCCAGTCAACCCTCTCCAAATCATCTTAAATTCGATTTGCTTTATTTTACAAGGACTATTAATTATCAAAAGAAAGTTTGTTTTCGAGGTAATCAATACTCAAAAAGTTTATTATTTTAAAGGTATTCTCAATCATAAATTTCTACCCTTTCCATCTTCTCTTCATTTTCTCTCACAGATTGTCTCACCTCTTCATCTTTTCTTCATTTTCTCTAACAGATCGCCCTAGCTCTTAATCTTCTCTTCATACCTTCTATCTCTATAAAAAAATTCCACCATCATACAAAAATAACAATCCTAAATCATCCATATTTCCTTACTGAATTTTCTTCCCTATTTCGACTTGAAAAAAGTAGGTTATATTATTAACATTTAACATATTTAGTTTTTTTTAATCACTCTTTGATTTTTTCTAATGTTTTACAGGTTCATAATTGGTAGAAAGTTTAGTCTAAGCCAAACCTAGAAGTTTATTCTATCATTCTATTTGGAAAAAAAAAAAGTAAGTTATTATGATTTATTTGTTAGAAAAAAAACTATAGCTTAAATGTTATTCGATGGGCAACGAAATTATGAAAGGAGCATATGAACAATCTGTACTACACCTCCAAGCTAGTCATTGATCTCAATTAGCCTGGAAAGACATATTTTCTGGTGGATTATTATACTGTCGGTTACGGGAAGCCGTACTTAGTAGGTTGGTCGGACAACCAGACCCACTAATAATACCATATTTACACTCGTCCAGATTTTATGGGGTTTCATGCATTGGGTTTATTTAGTATGACTGGCATTTACTCACTGCATTGGTGGAGCACTGGCGACAAGAGACACACACTTTCCACCTACCGCACGGTGAGTGTACGATCACAGTTCAAGATGTAGCCATCCAATTCAGACTCCCTATTAATGGGTGTGCATTAACTTGTTCCCTCAACTACATCTAGTTTGATGTTTCTGGAGATTACTACCAACGATAATGTGTTGAAAGGTGGTCGGCTTAGCTTTCCTTGGTTGGTCGATCAGGTTAACAATTTTGAACATCTACTTGAGGACGTCGAGGAAGTGAACCTGCAACGATATGCCCATGCATATATATTGTCTTTGATAGGAGATGTAATTTTTTCAGACAAATCTAACAGTCGGGTCCACTTAATGTATCTTCCCCTGCCAGTAGATTTGCATGAGGCAGGAATGTATAGTTGGGGAGCAGGGTGTCTTGCATGGCTATATAGACAGTTGTGCAAAATTGCGGTTATTGATGCGAAAGATTTAGATGGACCCCTAATCCTTTTAGAAGTTTGGGCATGGGATCGATTCCCTTTTTTGGCTCCCTGACGACGACATCGTCACGAGAATCAATTGGGAGACAGACCACTGACAATAGGTAATAACATTATTAAATTTAATGATTGAATTTATATATAGTCATACATTTCACTTACGTTAGACTAACAATACGTTCGTAGATGGAATGATGAATTTTCAGTAACCAAATCACCGACCCATGTATTGGTCCAGTATAAATGCTTGTTAGATACATGTTAGATACGATTAAGCCTGATCAGGTATCTTAAGTTTGTTCATGTATTGTTATTAAGCAAATTGGTTTAATTTATACTTATGTAGGTGAACTTATTTTTAAAAATATATATGCAGATTATTTGGGAGCCTTATAATCATATGTTCCATAACTTGCCCCGATATTGTCTTGTAGTAATCACATATGGTCAGCTAGAGTTCCACTCATTTGTTTCTATGTCATTGAATGGTTATTCTCAGATCGTGTGA

mRNA sequence

ATGTGTCACTCGAACTTTCCTTGGTTGGTCGATCAGGTTAACAATTTTGAACATCTACTTGAGGACGTCGAGGAAGTGAACCTGCAACGATATGCCCATGCATATATATTGTCTTTGATAGGAGATGTAATTTTTTCAGACAAATCTAACAGTCGGGTCCACTTAATGTATCTTCCCCTGCCAGTGAACTTATTTTTAAAAATATATATGCAGATTATTTGGGAGCCTTATAATCATATGTTCCATAACTTGCCCCGATATTGTCTTGTAGTAATCACATATGGTCAGCTAGAGTTCCACTCATTTGTTTCTATGTCATTGAATGGTTATTCTCAGATCGTGTGA

Coding sequence (CDS)

ATGTGTCACTCGAACTTTCCTTGGTTGGTCGATCAGGTTAACAATTTTGAACATCTACTTGAGGACGTCGAGGAAGTGAACCTGCAACGATATGCCCATGCATATATATTGTCTTTGATAGGAGATGTAATTTTTTCAGACAAATCTAACAGTCGGGTCCACTTAATGTATCTTCCCCTGCCAGTGAACTTATTTTTAAAAATATATATGCAGATTATTTGGGAGCCTTATAATCATATGTTCCATAACTTGCCCCGATATTGTCTTGTAGTAATCACATATGGTCAGCTAGAGTTCCACTCATTTGTTTCTATGTCATTGAATGGTTATTCTCAGATCGTGTGA

Protein sequence

MCHSNFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPLPVNLFLKIYMQIIWEPYNHMFHNLPRYCLVVITYGQLEFHSFVSMSLNGYSQIV
Homology
[Close]
BLAST of Tan0018618 vs. NCBI nr
Match: XP_038896629.1 (protein MAIN-LIKE 2-like [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 5   NFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPL 61
           + PWL DQ NNF HL +  +E +LQRYA AYIL LIG ++F DKSNSRVHLMYLPL
Sbjct: 57  SLPWLADQFNNFAHLPDHADEEDLQRYAQAYILKLIGGLVFPDKSNSRVHLMYLPL 112

[Close]
BLAST of Tan0018618 vs. NCBI nr
Match: XP_038896340.1 (protein MAIN-LIKE 2-like [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 5   NFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPLPVN 64
           + PWL DQ +NF HLL++ +E  LQRYA AYIL+LIG ++F +KSNSRVHLMYLPL ++
Sbjct: 57  SLPWLADQFDNFAHLLDNADEEELQRYARAYILTLIGGLVFPNKSNSRVHLMYLPLLID 115

[Close]
BLAST of Tan0018618 vs. NCBI nr
Match: XP_038896713.1 (protein MAIN-LIKE 2-like [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-11
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 5   NFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPLPVN 64
           + PWL D   NF HL +  +E +LQRY  AYI +LIG ++FSDKSNSRVHLMYLPL V+
Sbjct: 72  SLPWLADHFKNFAHLPDHADEEDLQRYTRAYIFTLIGGLVFSDKSNSRVHLMYLPLLVD 130

[Close]
BLAST of Tan0018618 vs. NCBI nr
Match: XP_022156071.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-11
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 5   NFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPL 61
           + PWL +Q ++F HL +DV++V LQRYA AYIL++I  ++FSD+ NSRVHLMYLPL
Sbjct: 151 SLPWLANQFDDFAHLPDDVDDVALQRYASAYILTIIRGIVFSDRLNSRVHLMYLPL 206

[Close]
BLAST of Tan0018618 vs. NCBI nr
Match: XP_031742252.1 (serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 5   NFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPLPVN 64
           + PWL +Q   F  L  D + V++QRYA AYI+ LIG  +F+DKSN+ VH M+LPL +N
Sbjct: 145 SLPWLAEQ---FTELPPDADVVSVQRYARAYIMQLIGGFLFADKSNTLVHCMFLPLLIN 200

[Close]
BLAST of Tan0018618 vs. ExPASy TrEMBL
Match: A0A6J1DTQ9 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111023038 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 5   NFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPL 61
           + PWL +Q ++F HL +DV++V LQRYA AYIL++I  ++FSD+ NSRVHLMYLPL
Sbjct: 151 SLPWLANQFDDFAHLPDDVDDVALQRYASAYILTIIRGIVFSDRLNSRVHLMYLPL 206

[Close]
BLAST of Tan0018618 vs. ExPASy TrEMBL
Match: A0A6J1D7K0 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111018366 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 5   NFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPL 61
           + PWL  Q   F  L +D +EV +QRYA AYI+ LIG  +F DKSN+ VHLM++PL
Sbjct: 137 SIPWLAAQ---FIKLPQDADEVMIQRYARAYIMQLIGGFLFQDKSNTLVHLMFIPL 189

[Close]
BLAST of Tan0018618 vs. ExPASy TrEMBL
Match: A0A6J1D8N6 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111018266 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-06
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 5   NFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPL 61
           + PWL  Q   F +L +D +E  + RYA AYI+ LIG  +F+DKSN+ VHLM+LPL
Sbjct: 149 SLPWLASQ---FCNLNDDADEETIARYARAYIMQLIGSSLFADKSNNLVHLMFLPL 201

[Close]
BLAST of Tan0018618 vs. ExPASy TrEMBL
Match: A0A6A5NUL1 (PMD domain-containing protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00021294 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.1e-06
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 2   CHSNFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPL 61
           C     WLV+   NF  L  D  E+ LQ+Y  A+IL +IG  + SDKSNSRVHLMYL L
Sbjct: 103 CELKLNWLVE---NFSELPSDPTEIQLQQYCRAHILYIIGGELISDKSNSRVHLMYLHL 158

[Close]
BLAST of Tan0018618 vs. ExPASy TrEMBL
Match: A0A5A7TI34 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00540 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.1e-06
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 5   NFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYL 59
           + PWLV+Q   FE L  D + V++QRYA AYI+ LIG  +F+DKSN+ VH M+L
Sbjct: 580 SLPWLVEQ---FEELPPDADIVSVQRYARAYIMQLIGGFLFADKSNTLVHCMFL 630

[Close]
BLAST of Tan0018618 vs. TAIR 10
Match: AT1G48120.1 (hydrolases;protein serine/threonine phosphatases )

HSP 1 Score: 41.6 bits (96), Expect = 5.0e-04
Identity = 21/58 (36.21%), Postives = 34/58 (58.62%), Query Frame = 0 

Query: 3   HSNFPWLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPL 61
           H +  WL +   NF +L  D +EV L+ +  A++L+L+   ++ DKS   V L +LPL
Sbjct: 155 HVSLAWLRE---NFRNLPADPDEVTLKCHTRAFVLALMSGFLYGDKSKHDVALTFLPL 209

[Close]
BLAST of Tan0018618 vs. TAIR 10
Match: AT2G04865.1 (Aminotransferase-like, plant mobile domain family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.0e-04
Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 0 

Query: 8   WLVDQVNNFEHLLEDVEEVNLQRYAHAYILSLIGDVIFSDKSNSRVHLMYLPL 61
           WL D   NF    +D     ++R   AY+L L+G  IFS  + ++V +MYLPL
Sbjct: 153 WLKD---NFSECPDDASFEEVERRTRAYLLYLVGSTIFSTTTGNKVPVMYLPL 202

The following BLAST results are available for this feature:
BLAST of Tan0018618 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0018618 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038896629.11.2e-1267.86protein MAIN-LIKE 2-like [Benincasa hispida][more]
XP_038896340.11.2e-1262.71protein MAIN-LIKE 2-like [Benincasa hispida][more]
XP_038896713.12.3e-1161.02protein MAIN-LIKE 2-like [Benincasa hispida][more]
XP_022156071.18.8e-1160.71serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia][more]
XP_031742252.11.7e-0650.85serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus][more]
BLAST of Tan0018618 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DTQ94.3e-1160.71serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A6J1D7K01.9e-0653.57serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A6J1D8N65.4e-0651.79serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A6A5NUL17.1e-0652.54PMD domain-containing protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_0002129... [more]
A0A5A7TI347.1e-0653.70Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
BLAST of Tan0018618 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48120.15.0e-0436.21hydrolases;protein serine/threonine phosphatases [more]
AT2G04865.15.0e-0439.62Aminotransferase-like, plant mobile domain family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018618.1Tan0018618.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance