Tan0018589 (gene) Snake gourd v1

Overview
NameTan0018589
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
LocationLG02: 41346760 .. 41347230 (+)
RNA-Seq ExpressionTan0018589
SyntenyTan0018589
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACAACATAAATACAATTTTGGTACAAGGCGACATTATGTTCGTGTTATACGAGTGTCCTCGGATGTCGGAGCTCGGCCGCGTCGCGAAGTGTTCGCGATGCGTCGATCGATGGATCGGGGCCAGCGAAAAGGCCAAGGTCTACATTATTGCGGCGGCATGTCCGATGTCTTGGCAAAGAAGCATGAGTCGATGGTTTTCGCTAAGGAGATCATGGAGAGTCTTGCAGGAAATGTTTGGACAATGATCCTTTCAGTCCGACATGACTCGCTCAAATCACGTTTTCAACTCACGGATGAAAGAGGGGTCGTCGTCCGTGAACACGTTCTAGACATGATGACCCACTTCCATCTCGGCCGAGATGAACGGGGGCTTCGATCGATGAGTCGAGCAGTCGATTTTATTTTGGAGACTCTTAGAAGAGTTTTCCTTGATTTCGTAGCAATTTGTTATGAACAAAATTAG

mRNA sequence

ATGGAAAAACAACATAAATACAATTTTGGTACAAGGCGACATTATGTTCGTGTTATACGAGTGTCCTCGGATGTCGGAGCTCGGCCGCGTCGCGAAGTGTTCGCGATGCGTCGATCGATGGATCGGGGCCAGCGAAAAGGCCAAGGTCTACATTATTGCGGCGGCATGTCCGATGTCTTGGCAAAGAAGCATGAGTCGATGGTTTTCGCTAAGGAGATCATGGAGAGTCTTGCAGGAAATGTTTGGACAATGATCCTTTCAGTCCGACATGACTCGCTCAAATCACGTTTTCAACTCACGGATGAAAGAGGGGTCGTCGTCCGTGAACACGTTCTAGACATGATGACCCACTTCCATCTCGGCCGAGATGAACGGGGGCTTCGATCGATGAGTCGAGCAGTCGATTTTATTTTGGAGACTCTTAGAAGAGTTTTCCTTGATTTCGTAGCAATTTGTTATGAACAAAATTAG

Coding sequence (CDS)

ATGGAAAAACAACATAAATACAATTTTGGTACAAGGCGACATTATGTTCGTGTTATACGAGTGTCCTCGGATGTCGGAGCTCGGCCGCGTCGCGAAGTGTTCGCGATGCGTCGATCGATGGATCGGGGCCAGCGAAAAGGCCAAGGTCTACATTATTGCGGCGGCATGTCCGATGTCTTGGCAAAGAAGCATGAGTCGATGGTTTTCGCTAAGGAGATCATGGAGAGTCTTGCAGGAAATGTTTGGACAATGATCCTTTCAGTCCGACATGACTCGCTCAAATCACGTTTTCAACTCACGGATGAAAGAGGGGTCGTCGTCCGTGAACACGTTCTAGACATGATGACCCACTTCCATCTCGGCCGAGATGAACGGGGGCTTCGATCGATGAGTCGAGCAGTCGATTTTATTTTGGAGACTCTTAGAAGAGTTTTCCTTGATTTCGTAGCAATTTGTTATGAACAAAATTAG

Protein sequence

MEKQHKYNFGTRRHYVRVIRVSSDVGARPRREVFAMRRSMDRGQRKGQGLHYCGGMSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDSLKSRFQLTDERGVVVREHVLDMMTHFHLGRDERGLRSMSRAVDFILETLRRVFLDFVAICYEQN
Homology
[Close]
BLAST of Tan0018589 vs. NCBI nr
Match: KAA0033218.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK12426.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 7.6e-13
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 56  MSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDSLKSRFQLTDERGVVVREHVLDMM 115
           MSDVLAKKHES+  AKEIM+SL G       SVRH+++K  +    + G  VREHVLDMM
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLKGMFGQPEWSVRHEAIKYIYTKRMKEGTSVREHVLDMM 60

Query: 116 THFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
            HF++ +   G    +  V FILE L + F+ F
Sbjct: 61  MHFNIAKVNNGAIDEANQVSFILEFLLKSFIPF 93

[Close]
BLAST of Tan0018589 vs. NCBI nr
Match: TYK04327.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 56  MSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDSLKSRFQLTDERGVVVREHVLDMM 115
           MSDVLAKKHES+  AKEIM SL G       S+RH+++K  + +  + G  VREHVLDMM
Sbjct: 1   MSDVLAKKHESLAMAKEIMNSLKGMFGQPEWSLRHEAIKYIYTMRMKEGTSVREHVLDMM 60

Query: 116 THFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
            HF++     G    +  V FILE+L + F+ F
Sbjct: 61  MHFNIAEVNGGAIDEANQVSFILESLLKSFIPF 93

[Close]
BLAST of Tan0018589 vs. NCBI nr
Match: TYJ96575.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-12
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 0 

Query: 35  AMRRSMDRGQRKGQG--LHYCGGMSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDS 94
           A R++ DR  +  +   +     MSDVLAKKHES+   KEIM+SL G      LS+RH++
Sbjct: 19  ASRKAYDRWIKANEKACVFILASMSDVLAKKHESLAMTKEIMDSLKGMFGQPKLSLRHEA 78

Query: 95  LKSRFQLTDERGVVVREHVLDMMTHFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
           +K  +    + G  +REHVLDMM HF++     G    +  V FILE+L + F+ F
Sbjct: 79  IKYIYTKRMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPF 134

[Close]
BLAST of Tan0018589 vs. NCBI nr
Match: KAA0054840.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27768.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-12
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 56  MSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDSLKSRFQLTDERGVVVREHVLDMM 115
           MSDVLAKKHES+  AKEIM+SL G       S+RH+++K  +    + G  VREHVLDMM
Sbjct: 1   MSDVLAKKHESLATAKEIMDSLKGMFGQRDWSLRHEAIKYIYTKRMKEGTSVREHVLDMM 60

Query: 116 THFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
            HF++     G    +  V FILE+L + F+ F
Sbjct: 61  MHFNIAEVNCGAIDKANQVSFILESLLKSFIPF 93

[Close]
BLAST of Tan0018589 vs. NCBI nr
Match: KAA0035827.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-12
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 0 

Query: 35  AMRRSMDR--GQRKGQGLHYCGGMSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDS 94
           A R++ D+     K   ++    MSDVLAKKHES+  AK+IM+SL G    +  S+RH++
Sbjct: 54  ASRKAYDQMIKANKKARVYILASMSDVLAKKHESLATAKKIMDSLKGMFGQLEWSIRHEA 113

Query: 95  LKSRFQLTDERGVVVREHVLDMMTHFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
           +K  +    ++G+ VREHV+DMM HF++     G    +  V FILE+L + F+ F
Sbjct: 114 IKYIYTKHMKKGISVREHVMDMMMHFNIVEVNGGTIDEANQVSFILESLPKSFIPF 169

[Close]
BLAST of Tan0018589 vs. ExPASy TrEMBL
Match: A0A5A7SRQ3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1591G00070 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-13
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 56  MSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDSLKSRFQLTDERGVVVREHVLDMM 115
           MSDVLAKKHES+  AKEIM+SL G       SVRH+++K  +    + G  VREHVLDMM
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLKGMFGQPEWSVRHEAIKYIYTKRMKEGTSVREHVLDMM 60

Query: 116 THFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
            HF++ +   G    +  V FILE L + F+ F
Sbjct: 61  MHFNIAKVNNGAIDEANQVSFILEFLLKSFIPF 93

[Close]
BLAST of Tan0018589 vs. ExPASy TrEMBL
Match: A0A5D3BXS3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00640 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 56  MSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDSLKSRFQLTDERGVVVREHVLDMM 115
           MSDVLAKKHES+  AKEIM SL G       S+RH+++K  + +  + G  VREHVLDMM
Sbjct: 1   MSDVLAKKHESLAMAKEIMNSLKGMFGQPEWSLRHEAIKYIYTMRMKEGTSVREHVLDMM 60

Query: 116 THFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
            HF++     G    +  V FILE+L + F+ F
Sbjct: 61  MHFNIAEVNGGAIDEANQVSFILESLLKSFIPF 93

[Close]
BLAST of Tan0018589 vs. ExPASy TrEMBL
Match: A0A5D3BDN4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold791G00050 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 0 

Query: 35  AMRRSMDRGQRKGQG--LHYCGGMSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDS 94
           A R++ DR  +  +   +     MSDVLAKKHES+   KEIM+SL G      LS+RH++
Sbjct: 19  ASRKAYDRWIKANEKACVFILASMSDVLAKKHESLAMTKEIMDSLKGMFGQPKLSLRHEA 78

Query: 95  LKSRFQLTDERGVVVREHVLDMMTHFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
           +K  +    + G  +REHVLDMM HF++     G    +  V FILE+L + F+ F
Sbjct: 79  IKYIYTKRMKEGTSIREHVLDMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPF 134

[Close]
BLAST of Tan0018589 vs. ExPASy TrEMBL
Match: A0A5A7UHR9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00330 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 56  MSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDSLKSRFQLTDERGVVVREHVLDMM 115
           MSDVLAKKHES+  AKEIM+SL G       S+RH+++K  +    + G  VREHVLDMM
Sbjct: 1   MSDVLAKKHESLATAKEIMDSLKGMFGQRDWSLRHEAIKYIYTKRMKEGTSVREHVLDMM 60

Query: 116 THFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
            HF++     G    +  V FILE+L + F+ F
Sbjct: 61  MHFNIAEVNCGAIDKANQVSFILESLLKSFIPF 93

[Close]
BLAST of Tan0018589 vs. ExPASy TrEMBL
Match: A0A5A7T2N1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G001250 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 0 

Query: 35  AMRRSMDR--GQRKGQGLHYCGGMSDVLAKKHESMVFAKEIMESLAGNVWTMILSVRHDS 94
           A R++ D+     K   ++    MSDVLAKKHES+  AK+IM+SL G    +  S+RH++
Sbjct: 54  ASRKAYDQMIKANKKARVYILASMSDVLAKKHESLATAKKIMDSLKGMFGQLEWSIRHEA 113

Query: 95  LKSRFQLTDERGVVVREHVLDMMTHFHLGRDERGLRSMSRAVDFILETLRRVFLDF 149
           +K  +    ++G+ VREHV+DMM HF++     G    +  V FILE+L + F+ F
Sbjct: 114 IKYIYTKHMKKGISVREHVMDMMMHFNIVEVNGGTIDEANQVSFILESLPKSFIPF 169

The following BLAST results are available for this feature:
BLAST of Tan0018589 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0018589 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033218.17.6e-1348.39gag/pol protein [Cucumis melo var. makuwa] >TYK12426.1 gag/pol protein [Cucumis ... [more]
TYK04327.11.3e-1247.31Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYJ96575.12.2e-1240.52gag/pol protein [Cucumis melo var. makuwa][more]
KAA0054840.12.9e-1247.31gag/pol protein [Cucumis melo var. makuwa] >TYK27768.1 gag/pol protein [Cucumis ... [more]
KAA0035827.13.8e-1239.66gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Tan0018589 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SRQ33.7e-1348.39Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1591G000... [more]
A0A5D3BXS36.2e-1347.31Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3BDN41.1e-1240.52Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold791G0005... [more]
A0A5A7UHR91.4e-1247.31Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G003... [more]
A0A5A7T2N11.8e-1239.66Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0012... [more]
BLAST of Tan0018589 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018589.1Tan0018589.1mRNA