Tan0018583 (gene) Snake gourd v1

Overview
NameTan0018583
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionWound-responsive family protein
LocationLG02: 2257763 .. 2258205 (-)
RNA-Seq ExpressionTan0018583
SyntenyTan0018583
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAAAATTCCCAAAGAAACAGAACACTCAAAACAGAGCAACAGAATAAAAAAAAATGAGTTCGTCAAGAAGAGCTTGGGTTGTAGTGGCGACTGTTGGAGTGGTGGAGGCCTTAAAAGATCAAGGGATTTGCCGGTGGAATCATACAATTAAATCGGTTCAACAGTACGCCAAAAACCATCTTCGATCTGTTTCGCAGGCGAAGAAGCTTTCTTCTCCGTCGGCGGCGGCGGTTTCCGATCAGAATTGGAAGCAGTCGGAGGAATCTTTGAGAACTGTCATGTACTTGAACTGTTGGGGTCCCAATAATTGACCCACATCGACTGCGATTCGAGCGAGACAATAGTTTTTAAGCACTAAACAAAGTTTTAGCGTTAGTGCTTTAGTGCTTAGTACTTGTAAATATATCCATCTCGATCTAATAGAAGAGCTTTTTGATGAGA

mRNA sequence

ATCAAAATTCCCAAAGAAACAGAACACTCAAAACAGAGCAACAGAATAAAAAAAAATGAGTTCGTCAAGAAGAGCTTGGGTTGTAGTGGCGACTGTTGGAGTGGTGGAGGCCTTAAAAGATCAAGGGATTTGCCGGTGGAATCATACAATTAAATCGGTTCAACAGTACGCCAAAAACCATCTTCGATCTGTTTCGCAGGCGAAGAAGCTTTCTTCTCCGTCGGCGGCGGCGGTTTCCGATCAGAATTGGAAGCAGTCGGAGGAATCTTTGAGAACTGTCATGTACTTGAACTGTTGGGGTCCCAATAATTGACCCACATCGACTGCGATTCGAGCGAGACAATAGTTTTTAAGCACTAAACAAAGTTTTAGCGTTAGTGCTTTAGTGCTTAGTACTTGTAAATATATCCATCTCGATCTAATAGAAGAGCTTTTTGATGAGA

Coding sequence (CDS)

ATGAGTTCGTCAAGAAGAGCTTGGGTTGTAGTGGCGACTGTTGGAGTGGTGGAGGCCTTAAAAGATCAAGGGATTTGCCGGTGGAATCATACAATTAAATCGGTTCAACAGTACGCCAAAAACCATCTTCGATCTGTTTCGCAGGCGAAGAAGCTTTCTTCTCCGTCGGCGGCGGCGGTTTCCGATCAGAATTGGAAGCAGTCGGAGGAATCTTTGAGAACTGTCATGTACTTGAACTGTTGGGGTCCCAATAATTGA

Protein sequence

MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAVSDQNWKQSEESLRTVMYLNCWGPNN
Homology
BLAST of Tan0018583 vs. NCBI nr
Match: XP_023554652.1 (uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo] >KAG6572338.1 hypothetical protein SDJN03_29066, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011949.1 hypothetical protein SDJN02_26857, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 9.1e-37
Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVV A+VGVVEALKDQG+CRWNHTIKSVQQYAKNH+RSVSQAKKLSSPS AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SDQ WKQSEESLRTVMYL+CWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. NCBI nr
Match: XP_022952158.1 (uncharacterized protein LOC111454919 [Cucurbita moschata])

HSP 1 Score: 161.4 bits (407), Expect = 3.5e-36
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVV A+VGVVEALKDQG+CRWNH IKSVQQYAKNH+RSVSQAKKLSSPS AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SDQ WKQSEESLRTVMYL+CWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. NCBI nr
Match: XP_022969311.1 (uncharacterized protein LOC111468355 [Cucurbita maxima])

HSP 1 Score: 160.2 bits (404), Expect = 7.7e-36
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVV A+VGVVEALKDQG+CRWNHTIKSVQQYAKNH+RSVSQAKKLSS S AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SDQ WKQSEESLRTVMYL+CWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. NCBI nr
Match: XP_038888492.1 (uncharacterized protein LOC120078325 [Benincasa hispida])

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 75/85 (88.24%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MS SRRAWVV A+VGVVEALKDQGICRWNHTI+S+QQYAKNH+RSVSQA+KLSSPSA AV
Sbjct: 1  MSCSRRAWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSVSQARKLSSPSATAV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SDQ WKQSEESLRTVMYL+CWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. NCBI nr
Match: KAA0031602.1 (uncharacterized protein E6C27_scaffold139G003700 [Cucumis melo var. makuwa] >TYK07054.1 uncharacterized protein E5676_scaffold13G003720 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MS SR+ WVV A+VGVVEALKDQGICRWNHTI+S+QQYAKNH+RS+SQAKKLSSPSAAAV
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SD  WKQSEESLRTVMYL+CWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. ExPASy TrEMBL
Match: A0A6J1GJQ8 (uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC111454919 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVV A+VGVVEALKDQG+CRWNH IKSVQQYAKNH+RSVSQAKKLSSPS AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SDQ WKQSEESLRTVMYL+CWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. ExPASy TrEMBL
Match: A0A6J1HXF9 (uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.7e-36
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MSSSRRAWVV A+VGVVEALKDQG+CRWNHTIKSVQQYAKNH+RSVSQAKKLSS S AAV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SDQ WKQSEESLRTVMYL+CWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. ExPASy TrEMBL
Match: A0A5D3C714 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003720 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.0e-35
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MS SR+ WVV A+VGVVEALKDQGICRWNHTI+S+QQYAKNH+RS+SQAKKLSSPSAAAV
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SD  WKQSEESLRTVMYL+CWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. ExPASy TrEMBL
Match: A0A1S3C0Q4 (uncharacterized protein LOC103495542 OS=Cucumis melo OX=3656 GN=LOC103495542 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-34
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MS SR+ WVV A+VGVVEALKDQGICRWNHTI+S+QQYAKNH+RS+SQAKKLSSPSAA V
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAATV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SD  WKQSEESLRTVMYL+CWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. ExPASy TrEMBL
Match: A0A0A0K3P5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAAV 60
          MS  R+ WVV A+VGVVEALKDQGICRWNHTI+S+QQYAKNH+RS+SQAKKLSSPSAAAV
Sbjct: 1  MSCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQNWKQSEESLRTVMYLNCWGPNN 86
          SD  W QSEESLRTVMYL+CWGPNN
Sbjct: 61 SDHKWNQSEESLRTVMYLSCWGPNN 85

BLAST of Tan0018583 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-23
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQ-GICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAA 60
          MSS+ + W+V A++G VEALKDQ G+CRWN+ I+S  QY +N+LRSVSQAKKLSS S   
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 VSDQNWKQSEESLRTVMYLNCWGPN 85
           +    KQ+EESLRTVMYL+CWGP+
Sbjct: 61 TN--KTKQAEESLRTVMYLSCWGPS 83

BLAST of Tan0018583 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 100.9 bits (250), Expect = 5.2e-22
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 1  MSSSRRAWVVVATVGVVEALKDQ-GICRWNHTIKSVQQYAKNHLRSVSQAKKLSSPSAAA 60
          MSS+ +AW V  ++G VEALKDQ G+CRWN+ ++SV Q+ +N++RSVSQ K+ SS S +A
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 V-----SDQNWKQSEESLRTVMYLNCWGPN 85
                  +  K++EESLRTVMYL+CWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

BLAST of Tan0018583 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 48.5 bits (114), Expect = 3.0e-06
Identity = 27/88 (30.68%), Postives = 47/88 (53.41%), Query Frame = 0

Query: 2  SSSRRAWVVVATVGVVEALKDQGICRWNHTIKSVQQYAKNHLRSVSQAKKLSSP--SAAA 61
          +  + +W V   +  VE LKDQG+ RWN+  + + + A   +R+++   + S P  S++A
Sbjct: 3  AGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSA 62

Query: 62 VSDQNWKQS----EESLRTVMYLNCWGP 84
           S ++   S    E S    M L+C+GP
Sbjct: 63 TSIRSKPLSTTPFETSFEKAMGLSCFGP 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023554652.19.1e-3791.76uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo] >KAG6572338.1 ... [more]
XP_022952158.13.5e-3690.59uncharacterized protein LOC111454919 [Cucurbita moschata][more]
XP_022969311.17.7e-3690.59uncharacterized protein LOC111468355 [Cucurbita maxima][more]
XP_038888492.12.9e-3588.24uncharacterized protein LOC120078325 [Benincasa hispida][more]
KAA0031602.11.5e-3485.88uncharacterized protein E6C27_scaffold139G003700 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
A0A6J1GJQ81.7e-3690.59uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC1114549... [more]
A0A6J1HXF93.7e-3690.59uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355... [more]
A0A5D3C7147.0e-3585.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C0Q42.0e-3484.71uncharacterized protein LOC103495542 OS=Cucumis melo OX=3656 GN=LOC103495542 PE=... [more]
A0A0A0K3P51.0e-3383.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G10265.12.1e-2362.35Wound-responsive family protein [more]
AT4G10270.15.2e-2254.44Wound-responsive family protein [more]
AT4G33560.13.0e-0630.68Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 12..83
e-value: 1.4E-30
score: 106.1
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 1..84
NoneNo IPR availablePANTHERPTHR33090:SF50FAMILY PROTEIN, PUTATIVE-RELATEDcoord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018583.1Tan0018583.1mRNA