Tan0018570 (gene) Snake gourd v1

Overview


Name	Tan0018570
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribosome-binding factor PSRP1
Location	LG01: 631851 .. 638050 (+)
RNA-Seq Expression	Tan0018570
Synteny	Tan0018570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGTTCTCACCTCTTCCATGCAAACCAATCTCCTTTCCGGCCATTCCTCAGCTCCTTTTTCTTCTTCTTCTACCGTTTCTACTTTTCCCGCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAATTCAGCCTCTCTCTTCCCATAGTTCTGCTTTCTTCAACTCCTGCAAGTGCTTTCGAACCATTGAGATTGCACCCCGCAACCTTCATGGCACTAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTCTCCTCTGTCAAATTAATTCTCCAAGGCAAAAATTTGGAGGTATTTTAACTTCCTCTTCGCTCTTGTTTTTCTCACTATGTTTTCTTCTCTTCAATTTCTATCTTACTGCGCTGAATTGTTCGATTCTTAGATGTGTTCAAGACTTCCTTACTAATTAATGTTTCGACAATTCGTTTTTAAATGTTAAATTCCCTAAAATCGCCTCACGCTCCTTCTTATTAGGAGTAACATCCTGAGAGAAATCAAAGTGGGACATTAATGACCTACCCAGGCACATTTTAAAGGATATACTTGGCTATATTTTGCCTCACTAACATGCTAAAAAAGTTTACCAAAGCCACAATGTAATTCAGACTAAAACTGCACATTCAAGCAGATAAAGAAACGACCTACTAACTCACTGCATGATGACAAAACTATCTACCGATTAAAAACCCTAATCCTCCCTTCAACTGAACACTCCAAGCAAGGACTCAGTATATCAATCTGACATCCCTCGCATCTTCAAGAAAACATCCGGCTTCAAAGGCTTAGTCATCACGCTAACCAAACCAACTGTCTTGTGCGCCAAAATATCTCAACTCCCTTTCCTTAGTACCAGCTCTGATCTGATTCTTCGGAAGTTTGATTCAGGAGTTACTATCATTATGAATAACAGTCACTGCTCCACAAACCCTCTTGAACTCACCATATAAATTTTTAAATTTATATCTAGCTGGTTGATAGCCAATTCTATGAGCTACAAGTGCTATCACCAGACTAATTTCGTACTTCTAGTATAATCTACTTACGCCACTGAGCATATCCCTTTACTCAAAGCCTAGCCTTCTATATGTTGACTTCTCCGTTTCCATTACATTTAGTTATATAAACCTACCTCACTCTAATTTTATTTCATCTAGGTAAATCTGCTAATTCCTATGTGTCATTTCTTCTAATGTTTTCCATATCAACATTCACGTCCCTTCTCCATTTTTTACTCTACACGCCTCTTTGAAGTGATTGGGATCAACAACAGGAAACATGGCATAATGAGTCCACTATCTTTTCCAAAAACTCCTCCCCCTATTCCCTAATCTCTCATTCAATTTGCTAGTCTTCTATGTCTTGTTTGTTGCAGCTAGGAGATGGTTCTTTGGTCAAAGAATCAGGGAACATTCACTTTCTTCTATATCAGCATCTAAACCAACTTTATTCTCCGCTACATTCTCATCTAACACAACCATTCCCCCTTCCTGAATATCCCATTCCAAATCATACGCAATGGCTACTTCATATTGATAGACCCCCAATTACGAACGTGTGTACACATAAGTAAGTGAGGAGGGGCTAGGAAGCACGAACACTTCATTTTAGGCCAAGTGTTCGTGTCGGACACGGATACGTTCGGACATGCTCCGGGCACGTGTCCGACACGCTATTTTGCGTGTCCTTTATTTTTTTTATTTTTTAAATTTCGGACACGCTTGGACACAGCTTGGACAGCTCGAGAAAATTTTGGGGAAAAAATGCTTAAATCATTTAAATTTAGAAAAAAAAAACAAAACAAAAAGGACAAATCATGAAATCTAAACCCGTAATAAGTAACACTGCTAATCACTCGTCGCTAGCTGTTAGTTCTCTTCGCCATTGTCGGTCCTCTTTGTCACTGGTTGTTCACCATTTAGAAGTATGTTTTTTTTCTTAACTTTCTACAAGTTCTGTTTTTTTTCTTAACTTTCTACAAGTTCAATTAAATTAGACTGAGATAAACTTAACTTGACATTTTATGCATTTTAATGGAGCCTATTTCGTATTTTATGTCAAAATTTCCATATATGTTAAAATAATAATAATAAAAAAAGAATGTATCCCCAACGTGTCCATGTCCTAGTTTTTTAGAAATTGACGTATTATAGTGTCGTGTCCATGTCTATGTCCTATGTCCATGTCCCGTGTCCGTGCTTCTTAGAGGAGGGGTGTGCGTATGGGGAATGATTGTGTGTGAAAATAGAGCGGGGCCCAAGTTTGTTATAGGCCAGTTGTTGTTTGAGGGAGGGTATCTTGTTGCGATTTTCTGTTTTTGGCATTCTCTATGAGAATTGGGAGAGGTGGGAAGCTCTCTAAACTTCCCCTCGACACCTTATTATCTGATTATAAATAAAATTGTGGGGCAAGGCTTATCAATTTTTGGTATTAGAGCAGTGTTTCTGAGGAATGGTGATAAGATGAAAGGTAGAATTATAGCACTTGAAGAGGGTATCATTGGTGTAGGATCAAAACAAGCTACAATTGAAGTCAAAATGGATTCTCAATTCATGGAGATGGGGGAGAAACAAGCAGCAATGGAGGTGAAGATGGATTTTTAGTTTGCATAAGATGGATTTTTAGTTTACACTTATGCGAGAAGGGATGAAAACGATGTTCTTGAGGGTGGAGAGCTGGATGAATGTGGAAAAAGGATCAGTATTGTCGAAAGGATGTAAAAAAAGAAAGGAAGATGATGGAAAAGCATAAACAAGTAATGAGAAAATTCATGCACCTGTTATTCAAGAAGTGCCTTTGTTCGATATGAGATTTAGGAAGTTGGAGGTGTCGGTTTTCAAAGGCAATGTAGGTGAAGACCTTAGATAGATGGTTGCATCGGGTTAAAACGATATTTCGCAGTCAATCGTCTCATGGAGAGGGATAAGCCTGAAGTGGTGGTTTTATGTTAGGGTGAATCCCCTGATTGGCATCAATGAGAAGAGGAAAGAACACCCCTGAATAGTTGGGAGGCGTTTCGAAGAATGTTGTTGGAGCGTTTCCGGTTGATGTTGCAAGGGGATCGATATGCACGATTGATGAAGCCTCGACAGGAGACCATCATGCGGGAGTATTGTCGGCGATTTGAGCAACATGCGGCTAGGTTAAAGGACGTGTGTGAGAGTGTACTGGAGAGTAAATTCGATTATGGGCTCAAGGAGGAAATCCACAGTGAAATGCGTAAATAACAGCCCGTGGGCCTTAAGGCCAAGAAAGAAATGAAAAAAAACATGCAGCACACTCTTTGGAACTTGTATATCATCCATGCACAGCAAGCAACTTTAAAACTCATCAACCTTAAAAACATAGGAAGGGTTTTCCAAAGAATTACAGTAACTTTCTTCGATTCTTCATAGAACACGTTATATAATTGAAATTTGGAATGATGGATCTCAAAAACTTTTCAATCACTACAACATCTGCTTGGTTCTCACCATGTGCCTTCCATCCTCTACTGCTATATAGAGTCTAAACAAAAGATTCTTCAATGTGAAGAATTTCAAACTCCCCTCACAGTGCTTGCAAGTATGCATGATTTACTGATGTTGTTCCTTGATAGTTTCTGCTGCTTAAATTGAATATAGTTTTGCTGTAACCTTGTCGAGAATTGTCTCCTAAATTGATCTGTGCTTGATATAGATCTGGCCTTTAGAATCTTTGAGCTTCTAATGTTCAATCGTCTTCCTTTGCGGATATGTGAAGATATCACCTTCTGCTGTTGTAATAATCCTACTTTCCACTAAGTCCCTGCACCTTGAATGTAAGAAATCTTCCATGACGACCACAGTGCTCATCAAATTTTATATCTAGTGACTGCACAAATGAACTCTCCGTCATTGTACCACAGTCAACACATTCATTAAAAGACTGCTGCCTCTAAATTTAACTTGGCCCTCAATTATGGAGCTTTGACACCAAATATTAGAAACAGGGTCTCCAAAGAAATAAAAGTGGGAGAAATATACTATTATAATCATGCTGAAAATGATAGCTTAACCCATCTAACAAAGTTTTATAAGGTGTTCATCATTCTTAAGTTACCTACCAGATGCAGATAAAGAAATTTCCTACTAACACTAGTAAACAAACTGCCTTAATGGTAGAAATTTTGTTCCTGCAGATGACAAGACCACCTACTAACTAGACGTTCTAACACCTATTTCTAGAAATGGTCAGAATTTCAGTTAACCAATTTATCACATCTCAATGTTTCAATTGTTAAACCTTGAGTGGATTTATTTTTTATTGTGCACAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAAGCAGTCCAGAAGCACGGTCACCTAGTGAGAGAAGTAGATGTCAGGTTATCAGTAAGAGGTGGAGAGTTTGGGAAGGGTCCAAGGATCAGAAGATGTGAGGTATTGTATTGCTCCTTTATTTTAAATTTATCCATATGAATTGAATCCTCGTTCTTTTCTAGAAACATTTGTGTTTGTATAGGTTACTTTATTTACGAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCGAGCATTGATTTGGTATCTTCCATCATACAAAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAAGAAGATGGTGGAGAAGTTATTGATGAGGTGGTTCCTTGAACCTTTGGTTTTTTACTTTGAGTTTATTTGCTGCATATATTGGAAGCATTACATTCTCAATCTAGATTTCCCCCTCTGATGTGCTTTTTTCAACTGAATTCTTCCAAACTTATTACATTTTATCAGTCAGATATTTTTCTTCACAACATGATATTTTAGATGAACATGAAAAACTCGGAAGGTAGATCTTACAGCTGTAAGATAGAGGCCCTACGTAGTTTGCAGGACCTGTTATTTGTTATTTCTTGCTGAGCTAATATTGTGCTTAACTATTATTGATTAGCTTCTGACTGTTGGATAGTCCTCCAGTGTTTACTGGGGCCTGTTTCATTAGAATTTCCTTTCTACTCAAGCTTTTCAACCTGCTTAGAGTTACGAAGTTGGTTCATCATAGCAATTGAGACATCCTTCCAAAGCTTTTACTGTTCCTTTGCTCTTAATGAGTGTTTTGTGGTCCATTCAACTGTTGTTTTTTCTATTTTATAGTTATAGCTTAAGATTCACTTGCTTTTTTTTTGTTGATGTTCGATTTTGGTTGGAAGAAGCACTGTGTAAGGCCTCCAATAATTCATACTTATTCTAGAAACGGTAAAGTGGGGATTGGGAGATGAAAAACGGTTTTGGTACCCGTTGGGATTGTCCGTGTGTATGGCAAGGAGGGAGCATGGGAGGTTTATGTAGGGGTTTTGGGTTTGCAGCAAGGTAGGAATTTTTGTGGACAGGTTGTCTAGAAGGAGAGAATCAGCTCTCTCGAAAAGTTGGGAGGTCTGGTTGTTTTGTTATTGTTCTTCCTACTATCAATCCAAGCGGCTAATAACCCACTCCCTATGGAAGAACTCATAGAGGGGTATTGGTTTATTGTTATCTCCTTTGTGTGTGTGTTCTTTTTTGTGTTAAATAGGTGGATCATAGTTGGATGCCTGACACACTTGCATGCCGTTTTGATCTTTGCCCTTTCTAGATGATTAGAGCATGTATTATGTGTCGGAAGCTTTTGTATGATATATCAAAATAGTTTTAAGATCGATTTTTCTTTTTTACGTCAGCATTTTTTGTCTCTCGTTACTCATTTTTAACTTGATTTCAGATTGTACGGACAAAGTACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAGCAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGTGCTGACTAATATAATAATCTTGTTTTGTTGGGATTTTGTGCTGTTTATATCTTGTGGCTTATTGTCTTCATCTTCGGCCCAGGTGAGATAAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAAATGGAACTGAGAAATTAGAGCCTGTGACTGTTGAACCAGCCAGAGAACCTTCCTTAGCGGAATGA

mRNA sequence

ATGACCGTTCTCACCTCTTCCATGCAAACCAATCTCCTTTCCGGCCATTCCTCAGCTCCTTTTTCTTCTTCTTCTACCGTTTCTACTTTTCCCGCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAATTCAGCCTCTCTCTTCCCATAGTTCTGCTTTCTTCAACTCCTGCAAGTGCTTTCGAACCATTGAGATTGCACCCCGCAACCTTCATGGCACTAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTCTCCTCTGTCAAATTAATTCTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAAGCAGTCCAGAAGCACGGTCACCTAGTGAGAGAAGTAGATGTCAGGTTATCAGTAAGAGGTGGAGAGTTTGGGAAGGGTCCAAGGATCAGAAGATGTGAGGTTACTTTATTTACGAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCGAGCATTGATTTGGTATCTTCCATCATACAAAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTACGGACAAAGTACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAGCAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATAAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAAATGGAACTGAGAAATTAGAGCCTGTGACTGTTGAACCAGCCAGAGAACCTTCCTTAGCGGAATGA

Coding sequence (CDS)

ATGACCGTTCTCACCTCTTCCATGCAAACCAATCTCCTTTCCGGCCATTCCTCAGCTCCTTTTTCTTCTTCTTCTACCGTTTCTACTTTTCCCGCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAATTCAGCCTCTCTCTTCCCATAGTTCTGCTTTCTTCAACTCCTGCAAGTGCTTTCGAACCATTGAGATTGCACCCCGCAACCTTCATGGCACTAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTCTCCTCTGTCAAATTAATTCTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAAGCAGTCCAGAAGCACGGTCACCTAGTGAGAGAAGTAGATGTCAGGTTATCAGTAAGAGGTGGAGAGTTTGGGAAGGGTCCAAGGATCAGAAGATGTGAGGTTACTTTATTTACGAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCGAGCATTGATTTGGTATCTTCCATCATACAAAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTACGGACAAAGTACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAGCAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATAAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAAATGGAACTGAGAAATTAGAGCCTGTGACTGTTGAACCAGCCAGAGAACCTTCCTTAGCGGAATGA

Protein sequence

MTVLTSSMQTNLLSGHSSAPFSSSSTVSTFPASFSLHFSALKIQPLSSHSSAFFNSCKCFRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGKAVQKHGHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTEKLEPVTVEPAREPSLAE

Homology

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BLAST of Tan0018570 vs. ExPASy Swiss-Prot
Match: P19954 (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 345.9 bits (886), Expect = 4.7e-94
Identity = 174/271 (64.21%), Postives = 213/271 (78.60%), Query Frame = 0


Query: 46  LSSHSSAFFNSCKCFRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVK 105
           LSS  S F NSC     + +    +       + MSWDGPLSSVKLILQG+NLE+++ V+
Sbjct: 32  LSSLRSTFTNSCSLGLNVAVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNLEVSDNVR 91

Query: 106 KHVEEKVGKAVQKHGHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE 165
            HVE+KVGK+V KH HLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE
Sbjct: 92  SHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAE 151

Query: 166 TVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEE--EEVSQE- 225
           ++Y+SIDLVSSIIQRKLRKIK+K SDHGRHMKGF+R KVR+P P+ +  EE  EEV    
Sbjct: 152 SLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAP 211

Query: 226 -----DGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKD 285
                +  + I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+
Sbjct: 212 APVSVEDDDFIEEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKE 271

Query: 286 GGYGLIIPKENGTEKLEPVTVEPAREPSLAE 309
           GGYGLIIPK+  TEKLE + V+  ++PS AE
Sbjct: 272 GGYGLIIPKDGKTEKLESLPVQTDKQPSFAE 302

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BLAST of Tan0018570 vs. ExPASy Swiss-Prot
Match: P74518 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-34
Identity = 90/206 (43.69%), Postives = 132/206 (64.08%), Query Frame = 0


Query: 89  VKLILQGKNLELTEAVKKHVEEKVGKAVQKHGHLVREVDVRLSVRGGEFGKGPRI---RR 148
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 149 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--DSDHGRHMKGFDRLK 208
            EVT++     V+RA+E +E +YASIDLV+  I R+LRK KE+  D  HG        +K
Sbjct: 61  AEVTVYA-NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHG-------NVK 120

Query: 209 VREPAPIVVEDE--EEEVSQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF 268
             E    +VED+  EE +  +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY F
Sbjct: 121 TSE----IVEDKPVEENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMF 180

Query: 269 RNEETGEINILYKRKDGGYGLIIPKE 288
           RN++T EIN++Y R  GGYG+I P +
Sbjct: 181 RNKDTDEINVIYIRNHGGYGVIQPHQ 189

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BLAST of Tan0018570 vs. ExPASy Swiss-Prot
Match: P47908 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 7.4e-31
Identity = 79/199 (39.70%), Postives = 123/199 (61.81%), Query Frame = 0


Query: 89  VKLILQGKNLELTEAVKKHVEEKVGKAVQKHGHLVREVDVRLSVRGGEFGKGPRIRRCEV 148
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 149 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPA 208
           T++     V+RA+E +E +YASIDLVS  I R+LRK KEK+     H++        + +
Sbjct: 61  TVYA-NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQ-------EKTS 120

Query: 209 PIVVEDE-EEEVSQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG 268
            ++ ED   + +  +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T 
Sbjct: 121 EVLPEDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTN 180

Query: 269 EINILYKRKDGGYGLIIPK 287
            IN++Y R  GGYG+I P+
Sbjct: 181 AINVIYIRNHGGYGVIQPR 189

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BLAST of Tan0018570 vs. ExPASy Swiss-Prot
Match: Q9RVE7 (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=hpf PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.5e-20
Identity = 66/194 (34.02%), Postives = 111/194 (57.22%), Query Frame = 0


Query: 93  LQGKNLELTEAVKKHVEEKVGKAVQKHGHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 152
           L G+N+E+TE ++++VEEK+ + + ++   + +  V L+VR  +     R  R EV L  
Sbjct: 6   LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 65

Query: 153 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE---KDSDHGRHMKGFDRLKVREPAP 212
              G++RAEE    +YA+ID  S +++R+LRK K    K    GR         +  PA 
Sbjct: 66  VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKTRYMKQRQEGRPE------PLPGPAE 125

Query: 213 IVVEDEEEEVSQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEI 272
             V  +    + +D  E   EIVR K F++ P++ E+A+ Q++ + HDFY F++ + G+ 
Sbjct: 126 AEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-GQT 185

Query: 273 NILYKRKDGGYGLI 284
            ++Y+R+DG YGLI
Sbjct: 186 GVVYRRRDGHYGLI 188

[Close]

BLAST of Tan0018570 vs. ExPASy Swiss-Prot
Match: Q4L4H7 (Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=hpf PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-19
Identity = 67/202 (33.17%), Postives = 115/202 (56.93%), Query Frame = 0


Query: 89  VKLILQGKNLELTEAVKKHVEEKVGKAVQKHGHLVREVDVRLSVRGGEFGKGPRIRRCEV 148
           ++  + G NL +T+A++ ++E+K+GK ++++ + V      + V+  +        + EV
Sbjct: 2   IRFEIHGDNLTITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQ----NSTTKIEV 61

Query: 149 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-DSDHGRHMKGFDRLKVREP 208
           T+   K+  +RAEE  + +YA IDLV+S ++R++RK K + +  H  H          EP
Sbjct: 62  TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTH---------GEP 121

Query: 209 APIVVEDEE------EEVSQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF 268
              V E +E      ++V+ E   +   EI+R+K F + P+  EEA+ Q++ + HDFY F
Sbjct: 122 EAFVAEVQEAPPENVDDVNAEPTNDSEIEIIRSKQFSLKPMDSEEAVLQMELLGHDFYIF 181

Query: 269 RNEETGEINILYKRKDGGYGLI 284
            + ET   +I+YKRKDG YGLI
Sbjct: 182 TDRETDGTSIVYKRKDGKYGLI 188

[Close]

BLAST of Tan0018570 vs. NCBI nr
Match: XP_004147328.1 (ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hypothetical protein Csa_016934 [Cucumis sativus])

HSP 1 Score: 527.7 bits (1358), Expect = 6.7e-146
Identity = 278/310 (89.68%), Postives = 287/310 (92.58%), Query Frame = 0


Query: 1   MTVLTSSMQTNLLSGHS-SAPFSSSSTVSTFPASFSLHFSALKIQPLSSHSSAFFNSCKC 60
           M  LTSSMQ NLLS HS S PF SSSTVS FPASFSLHFSALK+  LSS++SAFFNSCK 
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSSSTVSYFPASFSLHFSALKVHALSSNASAFFNSCKN 60

Query: 61  FRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGKAVQKH 120
           F TIE A RN H +NSFSIRM+WDGPLSSVKLI+QGKNLELTEAVKKHVEEKVGKAVQKH
Sbjct: 61  FGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKH 120

Query: 121 GHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 180
            HLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQ
Sbjct: 121 SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVFASIDLVSSIIQ 180

Query: 181 RKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEIVRTKYFDM 240
           RKLRKIKEKDSD GRH+KGFDR KVREPAPIVVEDEEEEV QEDGGEVIDEIVRTKYFDM
Sbjct: 181 RKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDM 240

Query: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGT-EKLEPVTV 300
           PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGT EKLEPVT+
Sbjct: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTAEKLEPVTI 300

Query: 301 EPAREPSLAE 309
           E  REPSLAE
Sbjct: 301 EATREPSLAE 310

[Close]

BLAST of Tan0018570 vs. NCBI nr
Match: XP_022141073.1 (ribosome-binding factor PSRP1, chloroplastic [Momordica charantia])

HSP 1 Score: 517.7 bits (1332), Expect = 6.9e-143
Identity = 280/315 (88.89%), Postives = 285/315 (90.48%), Query Frame = 0


Query: 1   MTVLTSSMQTNLLSGHSSAPFSSSSTVSTFPASFSL----HFSALKIQPLSSHSSAFFNS 60
           M  LTSSM TNLL    SAP SSSST STFPASFSL    + SALKI PLSSH+S FFNS
Sbjct: 1   MATLTSSMHTNLL----SAP-SSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNS 60

Query: 61  CKCFRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGKAV 120
           C CF TI+IAPRN H  NSF+IRMSWDGPLSSVKLI+QGKNLELTEAVKKHVEEKVGKAV
Sbjct: 61  CNCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAV 120

Query: 121 QKHGHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 180
           QKH HLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSS
Sbjct: 121 QKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSS 180

Query: 181 IIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVED--EEEEVSQEDGGEVIDEIVRT 240
           IIQRKLRKIKEKDSD GRHMKGFDRLKVREPAPIVVED  EEEEVS ED GEVIDEIVRT
Sbjct: 181 IIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRT 240

Query: 241 KYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG-TEKL 300
           KYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG  EKL
Sbjct: 241 KYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKL 300

Query: 301 EPVTVEPAREPSLAE 309
           EPVTVEPAREPSLAE
Sbjct: 301 EPVTVEPAREPSLAE 310

[Close]

BLAST of Tan0018570 vs. NCBI nr
Match: XP_008460813.1 (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023.1 ribosome-binding factor PSRP1 [Cucumis melo var. makuwa])

HSP 1 Score: 516.5 bits (1329), Expect = 1.5e-142
Identity = 275/310 (88.71%), Postives = 283/310 (91.29%), Query Frame = 0


Query: 1   MTVLTSSMQTNLLSGHS-SAPFSSSSTVSTFPASFSLHFSALKIQPLSSHSSAFFNSCKC 60
           M  LTSSMQ NLLS HS   P  SSSTVS FPA FSLHFSALK+  LSS++SAFFNSCK 
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSSTVSYFPAPFSLHFSALKVHALSSNASAFFNSCKN 60

Query: 61  FRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGKAVQKH 120
           F TIE A RN H +NSFSIRM+WDG LSSVKLI+QGKNLELTEAVKKHVEEKVGKAVQKH
Sbjct: 61  FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKH 120

Query: 121 GHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 180
            HLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQ
Sbjct: 121 SHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASIDLVSSIIQ 180

Query: 181 RKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEIVRTKYFDM 240
           RKLRKIKEKDSD GRH+KGFDR KVREPAPIVVEDEEEEV QEDGGEVIDEIVRTKYFDM
Sbjct: 181 RKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDM 240

Query: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGT-EKLEPVTV 300
           PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGT EKLEPVTV
Sbjct: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTAEKLEPVTV 300

Query: 301 EPAREPSLAE 309
           E AREPSLAE
Sbjct: 301 EAAREPSLAE 310

[Close]

BLAST of Tan0018570 vs. NCBI nr
Match: XP_023551717.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 514.2 bits (1323), Expect = 7.6e-142
Identity = 276/315 (87.62%), Postives = 284/315 (90.16%), Query Frame = 0


Query: 1   MTVLTSSMQTNLLSGHSSAPFSSSS-TVSTFPASFSL----HFSALKIQPLSSHSSAFFN 60
           M  LTSSMQTNLLS HS  P SSSS TVSTFP SFSL    + + LKI  LSSH+SAFFN
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSTTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFN 60

Query: 61  SCK-CFRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGK 120
           SC  CFRTI IAPR  H T SFSIRMSWDGPLSSVKLI+QGKNLELTEAVKKHVEEKVGK
Sbjct: 61  SCNHCFRTIVIAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGK 120

Query: 121 AVQKHGHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV 180
           AVQKH HLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV
Sbjct: 121 AVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV 180

Query: 181 SSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEIVRT 240
           SSI+QRKLRKIKEKDSDHGRHMKGFDR K+REPAPIVVEDEEEEVSQEDGGE IDEIVRT
Sbjct: 181 SSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRT 240

Query: 241 KYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG-TEKL 300
           KYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G  EK+
Sbjct: 241 KYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKI 300

Query: 301 EPVTVEPAREPSLAE 309
           E VTVE ARE SLAE
Sbjct: 301 ETVTVEVAREASLAE 315

[Close]

BLAST of Tan0018570 vs. NCBI nr
Match: XP_022922607.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 511.1 bits (1315), Expect = 6.5e-141
Identity = 274/317 (86.44%), Postives = 283/317 (89.27%), Query Frame = 0


Query: 1   MTVLTSSMQTNLLSGHSSAP---FSSSSTVSTFPASFSL----HFSALKIQPLSSHSSAF 60
           M  LTSSMQTNLLS HS  P    SSSSTVSTFP SFSL    + + LK   LSSH+SAF
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60

Query: 61  FNSCK-CFRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKV 120
           FNSC  CFRTI +APR  H T SFSIRMSWDGPLSSVKLI+QGKNLELTEAVKKHVEEKV
Sbjct: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 120

Query: 121 GKAVQKHGHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180
           GKAVQKH HLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID
Sbjct: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180

Query: 181 LVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEIV 240
           LVSSI+QRKLRKIKEKDSDHGRHMKGFDR K+REPAPIVVEDEEEEVSQEDGGE IDEIV
Sbjct: 181 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIV 240

Query: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG-TE 300
           RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G  E
Sbjct: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE 300

Query: 301 KLEPVTVEPAREPSLAE 309
           K+E VTVE ARE SLAE
Sbjct: 301 KIETVTVEVAREASLAE 317

[Close]

BLAST of Tan0018570 vs. ExPASy TrEMBL
Match: A0A6J1CJG5 (ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011561 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 3.3e-143
Identity = 280/315 (88.89%), Postives = 285/315 (90.48%), Query Frame = 0


Query: 1   MTVLTSSMQTNLLSGHSSAPFSSSSTVSTFPASFSL----HFSALKIQPLSSHSSAFFNS 60
           M  LTSSM TNLL    SAP SSSST STFPASFSL    + SALKI PLSSH+S FFNS
Sbjct: 1   MATLTSSMHTNLL----SAP-SSSSTFSTFPASFSLLTSTNSSALKIHPLSSHTSPFFNS 60

Query: 61  CKCFRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGKAV 120
           C CF TI+IAPRN H  NSF+IRMSWDGPLSSVKLI+QGKNLELTEAVKKHVEEKVGKAV
Sbjct: 61  CNCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAV 120

Query: 121 QKHGHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 180
           QKH HLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSS
Sbjct: 121 QKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVYASIDLVSS 180

Query: 181 IIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVED--EEEEVSQEDGGEVIDEIVRT 240
           IIQRKLRKIKEKDSD GRHMKGFDRLKVREPAPIVVED  EEEEVS ED GEVIDEIVRT
Sbjct: 181 IIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGEVIDEIVRT 240

Query: 241 KYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG-TEKL 300
           KYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG  EKL
Sbjct: 241 KYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKL 300

Query: 301 EPVTVEPAREPSLAE 309
           EPVTVEPAREPSLAE
Sbjct: 301 EPVTVEPAREPSLAE 310

[Close]

BLAST of Tan0018570 vs. ExPASy TrEMBL
Match: A0A5D3BQR1 (Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00050 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 7.4e-143
Identity = 275/310 (88.71%), Postives = 283/310 (91.29%), Query Frame = 0


Query: 1   MTVLTSSMQTNLLSGHS-SAPFSSSSTVSTFPASFSLHFSALKIQPLSSHSSAFFNSCKC 60
           M  LTSSMQ NLLS HS   P  SSSTVS FPA FSLHFSALK+  LSS++SAFFNSCK 
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSSTVSYFPAPFSLHFSALKVHALSSNASAFFNSCKN 60

Query: 61  FRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGKAVQKH 120
           F TIE A RN H +NSFSIRM+WDG LSSVKLI+QGKNLELTEAVKKHVEEKVGKAVQKH
Sbjct: 61  FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKH 120

Query: 121 GHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 180
            HLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQ
Sbjct: 121 SHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASIDLVSSIIQ 180

Query: 181 RKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEIVRTKYFDM 240
           RKLRKIKEKDSD GRH+KGFDR KVREPAPIVVEDEEEEV QEDGGEVIDEIVRTKYFDM
Sbjct: 181 RKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDM 240

Query: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGT-EKLEPVTV 300
           PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGT EKLEPVTV
Sbjct: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTAEKLEPVTV 300

Query: 301 EPAREPSLAE 309
           E AREPSLAE
Sbjct: 301 EAAREPSLAE 310

[Close]

BLAST of Tan0018570 vs. ExPASy TrEMBL
Match: A0A1S3CCT7 (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 7.4e-143
Identity = 275/310 (88.71%), Postives = 283/310 (91.29%), Query Frame = 0


Query: 1   MTVLTSSMQTNLLSGHS-SAPFSSSSTVSTFPASFSLHFSALKIQPLSSHSSAFFNSCKC 60
           M  LTSSMQ NLLS HS   P  SSSTVS FPA FSLHFSALK+  LSS++SAFFNSCK 
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSSTVSYFPAPFSLHFSALKVHALSSNASAFFNSCKN 60

Query: 61  FRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGKAVQKH 120
           F TIE A RN H +NSFSIRM+WDG LSSVKLI+QGKNLELTEAVKKHVEEKVGKAVQKH
Sbjct: 61  FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKH 120

Query: 121 GHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 180
            HLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQ
Sbjct: 121 SHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASIDLVSSIIQ 180

Query: 181 RKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEIVRTKYFDM 240
           RKLRKIKEKDSD GRH+KGFDR KVREPAPIVVEDEEEEV QEDGGEVIDEIVRTKYFDM
Sbjct: 181 RKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDM 240

Query: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGT-EKLEPVTV 300
           PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGT EKLEPVTV
Sbjct: 241 PPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTAEKLEPVTV 300

Query: 301 EPAREPSLAE 309
           E AREPSLAE
Sbjct: 301 EAAREPSLAE 310

[Close]

BLAST of Tan0018570 vs. ExPASy TrEMBL
Match: A0A6J1E3S3 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430564 PE=3 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 3.1e-141
Identity = 274/317 (86.44%), Postives = 283/317 (89.27%), Query Frame = 0


Query: 1   MTVLTSSMQTNLLSGHSSAP---FSSSSTVSTFPASFSL----HFSALKIQPLSSHSSAF 60
           M  LTSSMQTNLLS HS  P    SSSSTVSTFP SFSL    + + LK   LSSH+SAF
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAF 60

Query: 61  FNSCK-CFRTIEIAPRNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKV 120
           FNSC  CFRTI +APR  H T SFSIRMSWDGPLSSVKLI+QGKNLELTEAVKKHVEEKV
Sbjct: 61  FNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV 120

Query: 121 GKAVQKHGHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180
           GKAVQKH HLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID
Sbjct: 121 GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASID 180

Query: 181 LVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEIV 240
           LVSSI+QRKLRKIKEKDSDHGRHMKGFDR K+REPAPIVVEDEEEEVSQEDGGE IDEIV
Sbjct: 181 LVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIV 240

Query: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG-TE 300
           RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G  E
Sbjct: 241 RTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE 300

Query: 301 KLEPVTVEPAREPSLAE 309
           K+E VTVE ARE SLAE
Sbjct: 301 KIETVTVEVAREASLAE 317

[Close]

BLAST of Tan0018570 vs. ExPASy TrEMBL
Match: A0A6J1J523 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482691 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 2.1e-137
Identity = 264/298 (88.59%), Postives = 272/298 (91.28%), Query Frame = 0


Query: 17  SSAPFSSSSTVSTFPASFSL----HFSALKIQPLSSHSSAFFNSCK-CFRTIEIAPRNLH 76
           SS+  SSSSTVSTFP SFSL    + + LKI  LSSH+SAFFNSC  CFRTI IAPR  H
Sbjct: 26  SSSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRKRH 85

Query: 77  GTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGKAVQKHGHLVREVDVRLS 136
            T SFSIRMSWDGPLSSVKLI+QGKNLELTEAVKKHVEEKVGKAVQKH HLVREVDVRLS
Sbjct: 86  ATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLS 145

Query: 137 VRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSD 196
           VRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKDSD
Sbjct: 146 VRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSD 205

Query: 197 HGRHMKGFDRLKVREPAPIVVEDEEEEVSQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQL 256
           HGRHMKGFDR K+REPAPIVVEDEEEEVSQEDGGE IDEIVRTKYFDMPPLTVEEAIEQL
Sbjct: 206 HGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQL 265

Query: 257 KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG-TEKLEPVTVEPAREPSLAE 309
           KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG  EK+E VTVE ARE SLAE
Sbjct: 266 KNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 323

[Close]

BLAST of Tan0018570 vs. TAIR 10
Match: AT5G24490.1 (30S ribosomal protein, putative )

HSP 1 Score: 354.8 bits (909), Expect = 7.2e-98
Identity = 182/248 (73.39%), Postives = 212/248 (85.48%), Query Frame = 0


Query: 68  RNLHGTNSFSIRMSWDGPLSSVKLILQGKNLELTEAVKKHVEEKVGKAVQKHGHLVREVD 127
           R+ +  +S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKH HLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 128 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE 187
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 188 KDSDHGRHMKGFDRLKVREPA-PIVVEDEEEEV-----SQEDGGEVIDEIVRTKYFDMPP 247
           KDSDHGRHMKGF+RLKVREP    VVED E+        +E+  ++I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPP 240

Query: 248 LTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG-TEKLEPVTVEP 307
           LTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIPK++G  EK+EP+  E 
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQ 300

Query: 308 AREPSLAE 309
             E S AE
Sbjct: 301 LNEHSFAE 308

The following BLAST results are available for this feature:

BLAST of Tan0018570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19954	4.7e-94	64.21	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
P74518	1.9e-34	43.69	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
P47908	7.4e-31	39.70	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
Q9RVE7	4.5e-20	34.02	Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13...	[more]
Q4L4H7	1.0e-19	33.17	Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCS...	[more]

BLAST of Tan0018570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147328.1	6.7e-146	89.68	ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hyp...	[more]
XP_022141073.1	6.9e-143	88.89	ribosome-binding factor PSRP1, chloroplastic [Momordica charantia]	[more]
XP_008460813.1	1.5e-142	88.71	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023...	[more]
XP_023551717.1	7.6e-142	87.62	ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022922607.1	6.5e-141	86.44	ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata]	[more]

BLAST of Tan0018570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJG5	3.3e-143	88.89	ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5D3BQR1	7.4e-143	88.71	Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CCT7	7.4e-143	88.71	ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1E3S3	3.1e-141	86.44	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J523	2.1e-137	88.59	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Tan0018570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24490.1	7.2e-98	73.39	30S ribosomal protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003489	Ribosome hibernation promoting factor/RaiA	PFAM	PF02482	Ribosomal_S30AE	coord: 92..188 e-value: 2.6E-22 score: 79.4
IPR003489	Ribosome hibernation promoting factor/RaiA	TIGRFAM	TIGR00741	TIGR00741	coord: 90..193 e-value: 1.5E-18 score: 65.1
IPR003489	Ribosome hibernation promoting factor/RaiA	CDD	cd00552	RaiA	coord: 90..188 e-value: 1.37018E-24 score: 93.3485
IPR038416	Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily	GENE3D	3.30.505.50		coord: 241..292 e-value: 1.7E-21 score: 77.5
IPR036567	Ribosome hibernation promotion factor-like	GENE3D	3.30.160.100		coord: 90..193 e-value: 1.4E-21 score: 78.6
IPR036567	Ribosome hibernation promotion factor-like	SUPERFAMILY	69754	Ribosome binding protein Y (YfiA homologue)	coord: 90..195
IPR032528	Sigma 54 modulation/S30EA ribosomal protein, C-terminal	PFAM	PF16321	Ribosom_S30AE_C	coord: 229..282 e-value: 4.4E-26 score: 90.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..308
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN	coord: 75..289
None	No IPR available	PANTHER	PTHR33231	30S RIBOSOMAL PROTEIN	coord: 75..289
IPR034694	Ribosome hibernation promoting factor, long/plastid	HAMAP	MF_00839	HPF	coord: 89..286 score: 20.368992

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018570.1	Tan0018570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045900	negative regulation of translational elongation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0043024	ribosomal small subunit binding
molecular_function	GO:0043022	ribosome binding