Tan0018565 (gene) Snake gourd v1

Overview


Name	Tan0018565
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG01: 31852567 .. 31855624 (-)
RNA-Seq Expression	Tan0018565
Synteny	Tan0018565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACGAACACTGTGTCCTCTTATGTTGACATTGCTTCTTCTTGCAGCTTTGCAATCAGGCCATTCTCCAATGCTTATTGGAGCTATCACCAATACAGGTAAAACACTATATACTCTTTAATTTCTAATCACTAGAGTAAATGATCAGTTTGTGATTTGCTCTATTTACGGTTCAGAGAAGTTGAAGCTTTTGTAAATCTCGTATTGAAGGGCTTGAATTTTTATACTACATATACGTTTTGGATTGTGGAGAGAAATAAGTCATATTAATCTTATCTATATTTGATCGTTGAGTTTGTGGTAAATGTATGTGTTATTGTGAACGAGTGAAGTTTTATGAACTTAAATTTATATATAATGAGTTTTTTTTATTGGTAAACTATAATATAGAATGGTTAAACTCGCATGTTAAATATAAGCTCACTATTACCATTTTAGAAATTAAATTTGGTGAAAAGTTAAATATGTCGTAGAGTCACTTTTTTTTTTCAAACTTTGGTCCTCGAAGTGACTCAATGGATTGTTAGCTCTATTGACCGTTTATAGTGTAATATACATTTAGTATATACTTATTTAAAGTTTTTTTAAAAATCAAAGTAAAGAGGGTAATTGAGGGTTTGAAAAGTTGTAATTAATAATAGTTTTTTCATTTTTAAAAATAAAGAACAGTTTTTTTTTTTTAATGTTGAAAATTTGTTTCACATTTATTAACAGAAGCATGGATGATAAAAAAAAAAAAAACCAATATTTTGTGATCACGATTTGTTTTTTTCTTCTTTTTTTTCTTTTTTTTTTTTGAAAAAGTATGATCATGATTTGTTAAATTCATTCTTCATATAGAATCGTTAATTAATTTTAAAGTGTGATTTGATTAAAACGTAGAGTTTTAAAATTATGATCAAATTACAGAATTAGTCCTATTTAGTTATAAACTTAAGTTTCAACTACCTTTCTGATTTTTTCATGTCATGTCATCCATCATCACATTGTATCAAATTATCATTCACTAGTTTAACTAGCATATCTCATCAACATTGGTGTTGACACAGATTTATTAGAATCAAAATTGAAAGTTAGCTAACATAATTAAAAGTTTGATTAATAAGATAAATACAGTTATAAAAATGTCAGGAACTAAAATTTTAATTTAACTTTAAATTAATATCGTAACTAATCAATAAAAACAATAAAAAAAAGATAGATTTCCAAACAAACAGTTCTAAAACCTTGAAAGAATAAAACCCCAATTAAAAAAAAGTTTAATCTACAAAAAAAAAAAAGGGGGTAATCTCTAGAAAAATGCATTCAAACAGACCCCCTTATTCTTTATAACATTGTAGGTTATATTTCTTTCTTATTCTCAAATTAAACAAAAGTTCTAAAGTAGACTGTTTCTTGATTTTACGTAGAACTAAGGTCAGTTCATCATTGGAGCTCGAATTCTAGGTATACCCATGATGTAGCTTCGAAGGTAATATCAACTTAATATACACTTATCATTTTCTTTTATCCAACTTTTTATCTTTACCCTATTTTTCATTTTCTTCACACAAACTTTATTTTTGTCCTTCACTCTAAATGATGGTGTTGTTAAATTTCCAATGTTTTGGACAGAAAAATTATGTATCCTAAAACGAACATGGGTGGATCTATATAGGAACAAGGAGGGGCCATGCCCCCAAAAATTTTAAATTTATAATCCTATAGTATGTAACGGTTTGGTTTAAAAAAATAACAGCATATACTTATAGTTTTGTGTAATGCATCTTTGGAAAAGAAATATTTGTTGTTCCAATGATAAAACACTTTATCTAATTCTACCAATGCTTAGGTTTAAATCCTACTTCTACATTTTTTTCTCTTTTTTATACGTCGCTTTGTTTTTTAGTTTTTAATATATTTATTTCTTTTATGTATAAGTTTATTCAAGGTTACTTTTTTTTTTTTTGATAATATATTCAAGATAACTAGTTTTATTAATTCTATAAAAAAATTAAATATTATATTTTATTATATACTTTTTAAAGTTTAGAGATGTAATAGATTAGAACTTAAAAGTATGCGGACTAACTCATAATTTAACTTTTTTTTTCTATTTAATAAGAAATTAAAATTATTCAAACTTAGTTAGAAAGTCTTCTATACACTCATTTATTCTTATCGTCGATAATTTTTTAAGTCCACATAATGTTGTGTTCAAATTGATCTTTTGATGAATTTTTTATTATATTTATTAAATAATAATTTGTCGGCCCTCCAAACATTAGTATCTGAGTTCGCTCCTGAAAACGAACCCCTTGCTAGTAGCAGAACCTTGTTAGTGACTTAGTTTGTGCAAAATTTACCAAAGTTAATGATATTTAAAAGTTAGATATGTCAAAATGGTAAAAAAACCATTTATTTTAAAGTACTAATAATTTTTATTAATGAATTAAAGAAAAAAAGAGTTGATAAAAATTATACGAAGATAATTTTAAAGAATTCGAGTCAGTTTAAGATTCGGGCAAAGAATGTTATCCAAATCCTCATCCCCAAAATTAATTTAAGAGAAAATTTTCCAACTCAATTTCAAGGTTGATCCTCATTCCCCTCTCAACAGATATTTCTGTCATCTTTTACATTTTATTTTTTAATTCAAAAGAGTCAAAACCAGTACGTTTTTTTTTTTTTTTTCTTAATATCATTATTTTTCAAACTTACTTTTAAAATATTATAGTTTTAATTAGGGAGCAAAAAATAATTTTGAAGTGTCATGAAACCATCTCTGCTAGATTTATTTATCAATTTGTGTAAATCAATGACTATTACACAAAGTAAAAACATACTAATTACTCTCATTAAAATCTGTACATGGTTTATAAGTTTTTTATTAAAGAAAAAAAAGCAATATTTCATTTCTCTGCCTTGGATTGATTTTAAGAACATGCATATAGAATTCATACCTGAAACCATTTCATTTCTGTGATGACTGAAACCAGGCAATAGAGAAGAGAGTTTATAAAAAGCCATCGGTGCCAAATCCAGAGGGGAATCATCGGCCTCCATCAAGGAAATGA

mRNA sequence

ATGAGACGAACACTGTGTCCTCTTATGTTGACATTGCTTCTTCTTGCAGCTTTGCAATCAGGCCATTCTCCAATGCTTATTGGAGCTATCACCAATACAGAACTAAGGTCAGTTCATCATTGGAGCTCGAATTCTAGGTATACCCATGATGTAGCTTCGAAGGCAATAGAGAAGAGAGTTTATAAAAAGCCATCGGTGCCAAATCCAGAGGGGAATCATCGGCCTCCATCAAGGAAATGA

Coding sequence (CDS)

ATGAGACGAACACTGTGTCCTCTTATGTTGACATTGCTTCTTCTTGCAGCTTTGCAATCAGGCCATTCTCCAATGCTTATTGGAGCTATCACCAATACAGAACTAAGGTCAGTTCATCATTGGAGCTCGAATTCTAGGTATACCCATGATGTAGCTTCGAAGGCAATAGAGAAGAGAGTTTATAAAAAGCCATCGGTGCCAAATCCAGAGGGGAATCATCGGCCTCCATCAAGGAAATGA

Protein sequence

MRRTLCPLMLTLLLLAALQSGHSPMLIGAITNTELRSVHHWSSNSRYTHDVASKAIEKRVYKKPSVPNPEGNHRPPSRK

Homology

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BLAST of Tan0018565 vs. ExPASy TrEMBL
Match: A0A0A0LUT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G505900 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 4  TLCPLMLTLLLLAALQSG--HSP--MLIGA-ITNTELRSVHHWSSNSRYTH-DVASKAIE 63
          TL  L+L+LLL AA Q    H P  + +GA ITN ELRSVHHWSSNS + + ++ SKAIE
Sbjct: 5  TLYHLLLSLLLFAAFQPSPLHLPSTVALGAKITNKELRSVHHWSSNSMHINGELVSKAIE 64

Query: 64 KRVYKKPSVPNPEGNHRPPSRK 80
          KRVYKKPSVPNP+GNH PPS K
Sbjct: 65 KRVYKKPSVPNPKGNHLPPSTK 86

The following BLAST results are available for this feature:

BLAST of Tan0018565 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018565 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUT6	1.4e-13	64.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G505900 PE=4 SV=1	[more]

BLAST of Tan0018565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018565.1	Tan0018565.1	mRNA