Tan0018463 (gene) Snake gourd v1

Overview
NameTan0018463
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionconserved peptide upstream open reading frame 28
LocationLG11: 17704716 .. 17704868 (-)
RNA-Seq ExpressionTan0018463
SyntenyTan0018463
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAAGAAAATTCTAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTGCTTCTTCTTTCGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAGTTGACCCTTGA

mRNA sequence

ATGGTGGAAGAAAATTCTAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTGCTTCTTCTTTCGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAGTTGACCCTTGA

Coding sequence (CDS)

ATGGTGGAAGAAAATTCTAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTGCTTCTTCTTTCGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAGTTGACCCTTGA

Protein sequence

MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP
Homology
BLAST of Tan0018463 vs. NCBI nr
Match: XP_008467130.2 (PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 8.6e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 50

BLAST of Tan0018463 vs. NCBI nr
Match: KAG7032577.1 (hypothetical protein SDJN02_06626, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGV 49
          MVEENSSSSNYMRSLLDSRASARLPLSA SSFAFGSCKEGWYYRCLG+
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAFSSFAFGSCKEGWYYRCLGM 48

BLAST of Tan0018463 vs. NCBI nr
Match: XP_016647517.1 (PREDICTED: uncharacterized protein LOC107880498 [Prunus mume] >ONI31761.1 hypothetical protein PRUPE_1G329400 [Prunus persica])

HSP 1 Score: 80.9 bits (198), Expect = 3.5e-12
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 7  SSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          S SN+MRSLL SRASA LP+SAAS+FAFGSCKEGWYYRCLGVDP
Sbjct: 6  SISNFMRSLLQSRASAFLPISAASAFAFGSCKEGWYYRCLGVDP 49

BLAST of Tan0018463 vs. NCBI nr
Match: KAG6579252.1 (hypothetical protein SDJN03_23700, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGW 42
          MVEENS SSNYMRSLLDSRASARLPLSAASSFAFGSCKEGW
Sbjct: 1  MVEENSCSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGW 41

BLAST of Tan0018463 vs. NCBI nr
Match: XP_017971818.1 (PREDICTED: uncharacterized protein LOC108660978 [Theobroma cacao])

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVE   S SN+M SL  SRASA LP+SAAS+FAFGSCKEGWYYRCLG+DP
Sbjct: 1  MVETIRSDSNFMLSLCQSRASALLPVSAASAFAFGSCKEGWYYRCLGLDP 50

BLAST of Tan0018463 vs. ExPASy TrEMBL
Match: A0A1S3CSS9 (uncharacterized protein LOC103504558 OS=Cucumis melo OX=3656 GN=LOC103504558 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 50

BLAST of Tan0018463 vs. ExPASy TrEMBL
Match: A0A251R6V3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G329400 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 7  SSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          S SN+MRSLL SRASA LP+SAAS+FAFGSCKEGWYYRCLGVDP
Sbjct: 6  SISNFMRSLLQSRASAFLPISAASAFAFGSCKEGWYYRCLGVDP 49

BLAST of Tan0018463 vs. ExPASy TrEMBL
Match: A0A5D3E3V5 (Senescence-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00320 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0

Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG 41
          MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG 40

BLAST of Tan0018463 vs. ExPASy TrEMBL
Match: A0A2P6R3E4 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0441831 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 7  SSSNYMRSLLDSRASAR-LPLSAASSFAFGSCKEGWYYRCLGVDP 51
          S SN+MRS+  SRASA  LP+SAAS+F+FGSCKEGWYYRCLGVDP
Sbjct: 6  SISNFMRSIAQSRASAAILPVSAASAFSFGSCKEGWYYRCLGVDP 50

BLAST of Tan0018463 vs. ExPASy TrEMBL
Match: A0A5D2MAG5 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G186600v1 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.9e-10
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVE   S S  M SL  SRAS  LPLSAAS+FAFGSCKEGWYYRCLG+DP
Sbjct: 1  MVETIWSCSILMLSLCKSRASTLLPLSAASAFAFGSCKEGWYYRCLGLDP 50

BLAST of Tan0018463 vs. TAIR 10
Match: AT1G70782.1 (conserved peptide upstream open reading frame 28 )

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-11
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVE N     +  SL   RAS  LPLS +S FAFGSCKEGWY+RCLG+DP
Sbjct: 1  MVETNPIGGKFTLSLSIKRASFSLPLSTSSVFAFGSCKEGWYFRCLGLDP 50

BLAST of Tan0018463 vs. TAIR 10
Match: AT1G23149.1 (conserved peptide upstream open reading frame 29 )

HSP 1 Score: 56.6 bits (135), Expect = 6.6e-09
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 1  MVEENSSSSNYMRSLLDSRAS-ARLPLSAASSFAFGSCKEGWYYRCLGVDP 51
          MVE N    N+  +L   RAS   +PLS  S F+FGSCKEGWY+RC+G+DP
Sbjct: 1  MVETNLIGDNHRLTLSTKRASFLIIPLSQDSVFSFGSCKEGWYFRCIGLDP 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_008467130.28.6e-19100.00PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo][more]
KAG7032577.14.0e-1695.83hypothetical protein SDJN02_06626, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_016647517.13.5e-1286.36PREDICTED: uncharacterized protein LOC107880498 [Prunus mume] >ONI31761.1 hypoth... [more]
KAG6579252.11.3e-1197.56hypothetical protein SDJN03_23700, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_017971818.11.3e-1176.00PREDICTED: uncharacterized protein LOC108660978 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
A0A1S3CSS94.2e-19100.00uncharacterized protein LOC103504558 OS=Cucumis melo OX=3656 GN=LOC103504558 PE=... [more]
A0A251R6V31.7e-1286.36Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G329400 PE=4 SV=1[more]
A0A5D3E3V53.2e-11100.00Senescence-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A2P6R3E44.6e-1077.78Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0441831 PE=4... [more]
A0A5D2MAG57.9e-1074.00Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G186600v1 P... [more]
Match NameE-valueIdentityDescription
AT1G70782.12.4e-1162.00conserved peptide upstream open reading frame 28 [more]
AT1G23149.16.6e-0954.90conserved peptide upstream open reading frame 29 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018463.1Tan0018463.1mRNA