Tan0018411 (gene) Snake gourd v1

Overview


Name	Tan0018411
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG10: 34101231 .. 34101581 (+)
RNA-Seq Expression	Tan0018411
Synteny	Tan0018411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATAATAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAATGAGACAAATCGATGCAAGAGGTTCGAGGATGGTCTACGAATAGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGCTGAGACGACATTACGGGTAGAGCGAAGCCTGGTGGATGACAGAATGGGAAAAGGGGTTGTAGGTGGTGGTCATACCACTTATTCTGTTGATTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTTTCAGGAAAAGGGAGCTTTAAACCCCATCGTGGTGGGTAG

mRNA sequence

ATGACTATAATAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAATGAGACAAATCGATGCAAGAGGTTCGAGGATGGTCTACGAATAGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGCTGAGACGACATTACGGGTAGAGCGAAGCCTGGTGGATGACAGAATGGGAAAAGGGGTTGTAGGTGGTGGTCATACCACTTATTCTGTTGATTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTTTCAGGAAAAGGGAGCTTTAAACCCCATCGTGGTGGGTAG

Coding sequence (CDS)

ATGACTATAATAGAATATGAGAAGAAGTTCACAGAATTATCAAAGTATGCTAGCACTATTGTTGCAAATGAGACAAATCGATGCAAGAGGTTCGAGGATGGTCTACGAATAGAGATCAGAACGCCTGTGACAGCAAGTTCGGAGTGGGTTGAGTTCTCCAAGCTTGCTGAGACGACATTACGGGTAGAGCGAAGCCTGGTGGATGACAGAATGGGAAAAGGGGTTGTAGGTGGTGGTCATACCACTTATTCTGTTGATTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTGTTTCAGGAAAAGGGAGCTTTAAACCCCATCGTGGTGGGTAG

Protein sequence

MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTLRVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG

Homology

[Close]

BLAST of Tan0018411 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-21
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MTI EYEKK+TELS YA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  L
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +  + RF PGVS +G+FK    G
Sbjct: 222 RVEKSL-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNG 276

[Close]

BLAST of Tan0018411 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MT+ EYEKK+TELSKYA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  L
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +  + RF P VS +GSFK    G
Sbjct: 200 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSG 254

[Close]

BLAST of Tan0018411 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MT+ EYEKK+TELSKYA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  L
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +  + RF P VS +GSFK    G
Sbjct: 234 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSG 288

[Close]

BLAST of Tan0018411 vs. NCBI nr
Match: KAA0042193.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 4.3e-21
Identity = 57/116 (49.14%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MT++EYEK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS+ W +F KL E  L
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +G +  F PGVS KG+FK    G
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSG 115

[Close]

BLAST of Tan0018411 vs. NCBI nr
Match: TYK26763.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 4.3e-21
Identity = 57/116 (49.14%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MT++EYEK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS+ W +F KL E  L
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +G +  F PGVS KG+FK    G
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSG 115

[Close]

BLAST of Tan0018411 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.1e-22
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MTI EYEKK+TELS YA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  L
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +  + RF PGVS +G+FK    G
Sbjct: 222 RVEKSL-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNG 276

[Close]

BLAST of Tan0018411 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MT+ EYEKK+TELSKYA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  L
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +  + RF P VS +GSFK    G
Sbjct: 234 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSG 288

[Close]

BLAST of Tan0018411 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MT+ EYEKK+TELSKYA+ ++ +E  RCKRFE+GLR EIRTPVTA ++W +FSKL E  L
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +  + RF P VS +GSFK    G
Sbjct: 200 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSG 254

[Close]

BLAST of Tan0018411 vs. ExPASy TrEMBL
Match: A0A5A7TG44 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006940 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-21
Identity = 57/116 (49.14%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MT++EYEK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS+ W +F KL E  L
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +G +  F PGVS KG+FK    G
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSG 115

[Close]

BLAST of Tan0018411 vs. ExPASy TrEMBL
Match: A0A5D3DT34 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00550 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-21
Identity = 57/116 (49.14%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MTIIEYEKKFTELSKYASTIVANETNRCKRFEDGLRIEIRTPVTASSEWVEFSKLAETTL 60
           MT++EYEK +TELSKYA++++ +E  RCKRF++GLR EIRTPV AS+ W +F KL E  L
Sbjct: 1   MTVVEYEKNYTELSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAAL 60

Query: 61  RVERSLVDDRMGKGVVGGGHTTYSVDLPRDRFQRGDNRRFTPGVSGKGSFKPHRGG 117
           RVE+SL ++R  +        T+S  + R+R  +G +  F PGVS KG+FK    G
Sbjct: 61  RVEKSL-NERKHEREASKNVRTFSSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSG 115

The following BLAST results are available for this feature:

BLAST of Tan0018411 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018411 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060484.1	1.5e-21	50.86	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0036813.1	2.5e-21	50.86	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	2.5e-21	50.86	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0042193.1	4.3e-21	49.14	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK26763.1	4.3e-21	49.14	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0018411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZM6	7.1e-22	50.86	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BB91	1.2e-21	50.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	1.2e-21	50.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7TG44	2.1e-21	49.14	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DT34	2.1e-21	49.14	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Tan0018411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018411.1	Tan0018411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity