Tan0018396 (gene) Snake gourd v1

Overview


Name	Tan0018396
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-H2 finger protein ATL56
Location	LG08: 8681741 .. 8683912 (+)
RNA-Seq Expression	Tan0018396
Synteny	Tan0018396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCTTCAAGATTCCGCCGCCACCCACGGCGGCGACCCGGCACCGCCACCGAAGCCAGAGACCAAAGTCCTCTCTCTGCTCCTCAAGGTCACCATCATGATCCTCTTAACCACTCTCTTCTTCGTCTTCCTCGGCCTCGCCACCGCTCTCCTCCTCATCCACCTCTGCGTCGCCAGCGCCCTCCACCGCCGCCGCCGCCGCCATCGCCGCCGTTTCCAATTCTCCGATTCCTCATCTGGGTTCTCCTCTCGCGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCTAATTGGGTCAACCCCCACTCCCAAATTGACTGCTCCATTTGCCTCGATGGCTTTAGAAAGGGCCAGTGGTGTAGAAAACTTGGTGGGTGCGGCCATGTTTATCACCGGAAGTGCATCGATGCGTGGTTGGTTAGGGTTTCTGCTTGCCCGCTTTGCCGGAGCTGCGTTCGATTGGATATGGAAGAAGATCGAATTGATTGTGTAAGTTCTCGGAACTATGAGATTTTGTATGCTCTGTAACTGTTAACTCTAGATTAGCTTCTTCTTCATTTGGTTATTTTTCCCTTTTGAGATGTATGTATAGTTGAAGCAAAGTTTGAAATGAAGGTTTCTTTTAGTTATGTTTTGATATTGTTGTTCTGTTGGCCATCAAAAGAAAAAAAAAATTGTGGTTCTGTTTTTCTGCTGTTATGATGCTTTTGCTTTTGGTTTCAACAACATTGGGTTGGGGATTTGTTGTAACCTTCTAGTCAAGGATATAATGTCTTAACGGGTTGAGCTATGTGATACTCGAATTAGGCTCCTTTTCCTCCTCAACCAATTGAGCTATGAGAGATTTTAGGGAAGTTCATTCTCTTGAGTTGAATGTATGGGGGAGTTTTTGAAAGTTAGAGATGCTTAAGAGGAAAAGGAGAAGAGAGGTTTCAAAGTTTAAGGATATGGGGAGGAATAATGTTGTAGTGTTCATTGATTTGTGTTGAATTTCATTTGGGTTTATGGATCATTAGATGGAACAAAACCTTATTATTGAAGAACCTTGTTTCTTTTGTTTTGTTTTTGAGAGTTTTGTGTGGTTGGGATTTAAACTTTTGATCTTTTGATCGAGAGCATATGTTTTTAACTTATTGAACCATGCTCGAATTGGCTGATATATGGTTCGATCAATTTAGCAGACTTTGTTGAAGGATTTATATGGATAATGTATTGGTCACTTGGAGTAAAATATCAAAGAAATGGGGTTGGTATCATAATCTTTGCTTCAAAACTGAAAACTAGTCCCAAAACTAGTTTACGTGCAAAATTGGGTTTATGGATCATTAGATGGAACGAAATCTTGTTGGAGAACCTTGTTGTTTCTTTTCTTTTGTTTTTGAGAGTTCTACGACATGCGGGGTATAGATTCAAACTTTTGACTGGTTAGTCTAGAGCATATATTTTAACTCGTTGAATAATGTTCAATTTGGATCAATTGAGCTATGTTCAAGTTGACTTGTATGGATAATGTCTTGGAGGCGCCATTGGAGTACAATATCAAAAAAATTGAAGTTGATTGATTTGAGCAAAACTTTGCTTCAAGGCTGAAAATTAGTCCCAAAACTATATGCGTGAAAGAGTGGTTTGTTGCGAGTATTTGACTTTGTATTGGTCTAAGTTTGATTATTGACTTGGCCTAATTATGATTATACCTATTTATATAAAGTGTTGGGCAACCACAATATATTATGTAAACAGATAATTAAAGGATAAGGGTGGGTTTCGAATGCCTTATGAAGAAAAAAATAGTGTTTTTTAAGTGAAAGTGTTTATCTTGCAAGCAATTTAAAAAGATTATTGCTTAAATGTTTCATTTAAAAGCAATATATATTTTAACTTTTGTTGATCATTAAAAATTCTAAAATGTGTTTGTAATTGGGTGGTAGTACTTGAAATTTTAATCAAACATTATCAATTCATGTCAAACACACCTAAATCTATTCCGTAGGATAACCATTTGATTTTTTGTTTTTAGTTTTTGAAAATTATGCTTTTAATTGCTATTTCTACTTATGGGTTTTCATGTTTTCTTGTCTATTTTTTAGATGTGTTTTCAAAAATTAACCCAAGTTTTGAAAACTAAAAAAAGTAGTTTTCAAAAATTTGTTTTTGTTTTTGAAATTTAGCTAA

mRNA sequence

ATGCCCCTTCAAGATTCCGCCGCCACCCACGGCGGCGACCCGGCACCGCCACCGAAGCCAGAGACCAAAGTCCTCTCTCTGCTCCTCAAGGTCACCATCATGATCCTCTTAACCACTCTCTTCTTCGTCTTCCTCGGCCTCGCCACCGCTCTCCTCCTCATCCACCTCTGCGTCGCCAGCGCCCTCCACCGCCGCCGCCGCCGCCATCGCCGCCGTTTCCAATTCTCCGATTCCTCATCTGGGTTCTCCTCTCGCGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCTAATTGGGTCAACCCCCACTCCCAAATTGACTGCTCCATTTGCCTCGATGGCTTTAGAAAGGGCCAGTGGTGTAGAAAACTTGGTGGGTGCGGCCATGTTTATCACCGGAAGTGCATCGATGCGTGGTTGGTTAGGGTTTCTGCTTGCCCGCTTTGCCGGAGCTGCGTTCGATTGGATATGGAAGAAGATCGAATTGATTGTGTAAGTTCTCGGAACTATGAGATTTTGTATGCTCTCTAA

Coding sequence (CDS)

ATGCCCCTTCAAGATTCCGCCGCCACCCACGGCGGCGACCCGGCACCGCCACCGAAGCCAGAGACCAAAGTCCTCTCTCTGCTCCTCAAGGTCACCATCATGATCCTCTTAACCACTCTCTTCTTCGTCTTCCTCGGCCTCGCCACCGCTCTCCTCCTCATCCACCTCTGCGTCGCCAGCGCCCTCCACCGCCGCCGCCGCCGCCATCGCCGCCGTTTCCAATTCTCCGATTCCTCATCTGGGTTCTCCTCTCGCGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCTAATTGGGTCAACCCCCACTCCCAAATTGACTGCTCCATTTGCCTCGATGGCTTTAGAAAGGGCCAGTGGTGTAGAAAACTTGGTGGGTGCGGCCATGTTTATCACCGGAAGTGCATCGATGCGTGGTTGGTTAGGGTTTCTGCTTGCCCGCTTTGCCGGAGCTGCGTTCGATTGGATATGGAAGAAGATCGAATTGATTGTGTAAGTTCTCGGAACTATGAGATTTTGTATGCTCTCTAA

Protein sequence

MPLQDSAATHGGDPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYAL

Homology

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BLAST of Tan0018396 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-32
Identity = 78/145 (53.79%), Postives = 100/145 (68.97%), Query Frame = 0


Query: 16  PPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRRHRRRFQF 75
           PPPKP+T++LSL L   IM  +  LF V +G+A+ L+L  L   S+LHR  RR RRR + 
Sbjct: 21  PPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLL--LSSLHRHHRR-RRRNRR 80

Query: 76  SDSSSGFSSRDLKKLLQFRFSN-WVNPHSQIDCSICLDGFRKGQWCRKLGGCGHVYHRKC 135
            +SS G SSR +KKL QF+FS        + DC +C DGFR+GQWCR L GCGHV+HRKC
Sbjct: 81  QESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKC 140

Query: 136 IDAWLVRVSACPLCRSCVRLDMEED 160
           +D WL++ S CP+CR+ VRL  EED
Sbjct: 141 VDTWLLKASTCPICRARVRL-WEED 161

[Close]

BLAST of Tan0018396 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-23
Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 1   MPLQDSAATHGGDPAPPPKPE-----TKVLS--LLLKVTIMILLTTLFFVFLGLATALLL 60
           +P   S +       PPPK       TK+LS  L+  + I + +T   F+   L      
Sbjct: 5   IPYDGSISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFF 64

Query: 61  IHLCVASALHRRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDG 120
                    +R R R  RR ++SD   G S R +K+L QF++    + +   DC +C+DG
Sbjct: 65  AFYWFLQRNYRHRLRRHRRHEYSD---GLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDG 124

Query: 121 FRKGQWCRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCV 153
           FR+GQWCRKL  CGHV+HRKC+D WL++VS CP+CR  V
Sbjct: 125 FRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICRDRV 160

[Close]

BLAST of Tan0018396 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 5.9e-09
Identity = 26/73 (35.62%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 81  GFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRKLGGCGHVYHRKCIDAWLV 140
           G S   L+KL  +  S+ +       C+ICL   + G+  R L  C H +H  C+D WL+
Sbjct: 150 GLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLI 209

Query: 141 RVSACPLCRSCVR 154
           R  +CP+CR  V+
Sbjct: 210 RHGSCPICRQAVK 222

[Close]

BLAST of Tan0018396 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-08
Identity = 48/150 (32.00%), Postives = 69/150 (46.00%), Query Frame = 0


Query: 14  PAPPPKPETKVLSLLLKVTIMILLTTLFFV------FLGLATALLLIHLCVASALHRRRR 73
           P PPP+P +  L   + +TI ILL  LFF+      F   A +        +    R  R
Sbjct: 36  PTPPPQPPS-ALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTRSSR 95

Query: 74  RHRRRFQFSDSSS-------GFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWC 133
              RR   S   S       G  S+ ++ L  +R++      ++ DC ICL  F +G+  
Sbjct: 96  MSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNE-DCVICLSDFEEGETV 155

Query: 134 RKLGGCGHVYHRKCIDAWLVRVSACPLCRS 151
           + +  CGHV+H  C+D WL     CPLCRS
Sbjct: 156 KVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of Tan0018396 vs. ExPASy Swiss-Prot
Match: Q9FKX5 (NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-08
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 79  SSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRKLGGCGHVYHRKCIDAW 138
           S G +   L ++ + R ++  +P   + CS+CL  F+ G+  R L  C H++H  CID W
Sbjct: 150 SKGLTGDSLNRIPKVRITD-TSPEI-VSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 209

Query: 139 LVRVSACPLCR 150
           L R ++CPLCR
Sbjct: 210 LRRHASCPLCR 218

[Close]

BLAST of Tan0018396 vs. NCBI nr
Match: XP_038889631.1 (RING-H2 finger protein ATL56-like [Benincasa hispida])

HSP 1 Score: 305.4 bits (781), Expect = 3.1e-79
Identity = 153/178 (85.96%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPLQDSAATHGG---DPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP QDSAA  G     P PPPKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQDSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHR RR HRRR QFSDSS+GFS RDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRHRRFHRRRAQFSDSSTGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYAL 176
           QWCRKLGGCGHVYHRKCID+WLVRVSACPLCR CVRLD EE  IDCVSS NYE+LYAL
Sbjct: 121 QWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDKEELEIDCVSSPNYELLYAL 178

[Close]

BLAST of Tan0018396 vs. NCBI nr
Match: XP_008452306.1 (PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa] >TYK10847.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 6.8e-79
Identity = 151/178 (84.83%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPLQDSAATHGG---DPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G     P PPPKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQHSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRR H RR Q+SDSSSGFS RDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYAL 176
           QWCR+LGGCGHVYHRKCID+WLVRVSACPLCR CVRLDMEE  IDCVSSRN+E+ YAL
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of Tan0018396 vs. NCBI nr
Match: XP_004149098.1 (RING-H2 finger protein ATL56 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 3.4e-78
Identity = 150/178 (84.27%), Postives = 158/178 (88.76%), Query Frame = 0


Query: 1   MPLQDSAATHG---GDPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G     P PPPKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRR H R  Q+SDSSSGFS RDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYAL 176
           QWCR+LGGCGHVYHRKCID+WLVRVSACPLCR CVRLDMEE  IDCVSSRN+E+ YAL
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of Tan0018396 vs. NCBI nr
Match: XP_023538017.1 (RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.7 bits (761), Expect = 6.4e-77
Identity = 149/175 (85.14%), Postives = 161/175 (92.00%), Query Frame = 0


Query: 1   MPLQDSAATHGGDPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVAS 60
           MPLQDS A   GDP PPPKPE KVLSLLLKV+IMI+LTTLFFVFLGLATALLLI+ CVAS
Sbjct: 1   MPLQDSTAAIAGDP-PPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVAS 60

Query: 61  ALH-RRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQW 120
            LH RRRRRHRRR QF+DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFRKGQW
Sbjct: 61  VLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQW 120

Query: 121 CRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYA 175
           CRKLGGCGH+YHRKCID+WLVRVSACPLCRS VRLDMEE+++DC +SR+YEILYA
Sbjct: 121 CRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANSRSYEILYA 174

[Close]

BLAST of Tan0018396 vs. NCBI nr
Match: XP_022965979.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 149/175 (85.14%), Postives = 161/175 (92.00%), Query Frame = 0


Query: 1   MPLQDSAATHGGDPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVAS 60
           MPLQDS A + GDP PPPKPE KVLSLLLKV+IMI+LTTLFFVFLGLATALLLI+ CVAS
Sbjct: 1   MPLQDSTAANAGDP-PPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVAS 60

Query: 61  ALH-RRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQW 120
            LH RRRRRHR R QF+DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFRKGQW
Sbjct: 61  VLHRRRRRRHRHRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQW 120

Query: 121 CRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYA 175
           CRKLGGCGHVYHRKCID+WLVRVSACPLCRS VRLDMEE+++DC +SR+YEILYA
Sbjct: 121 CRKLGGCGHVYHRKCIDSWLVRVSACPLCRSPVRLDMEENQMDCANSRSYEILYA 174

[Close]

BLAST of Tan0018396 vs. ExPASy TrEMBL
Match: A0A5D3CFV1 (RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00160 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79
Identity = 151/178 (84.83%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPLQDSAATHGG---DPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G     P PPPKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQHSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRR H RR Q+SDSSSGFS RDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYAL 176
           QWCR+LGGCGHVYHRKCID+WLVRVSACPLCR CVRLDMEE  IDCVSSRN+E+ YAL
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of Tan0018396 vs. ExPASy TrEMBL
Match: A0A1S3BTK8 (RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79
Identity = 151/178 (84.83%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPLQDSAATHGG---DPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G     P PPPKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 1   MPFQHSAAVSGDPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 60

Query: 61  VASALHRRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRR H RR Q+SDSSSGFS RDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 61  VASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120

Query: 121 QWCRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYAL 176
           QWCR+LGGCGHVYHRKCID+WLVRVSACPLCR CVRLDMEE  IDCVSSRN+E+ YAL
Sbjct: 121 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of Tan0018396 vs. ExPASy TrEMBL
Match: A0A0A0LJ61 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 150/178 (84.27%), Postives = 158/178 (88.76%), Query Frame = 0


Query: 1   MPLQDSAATHG---GDPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLC 60
           MP Q SAA  G     P PPPKPET++LSLLLK+ IMILLTTLFFVFLGLATALLLIHLC
Sbjct: 56  MPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLC 115

Query: 61  VASALHRRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 120
           VASALHRRRR H R  Q+SDSSSGFS RDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG
Sbjct: 116 VASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKG 175

Query: 121 QWCRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYAL 176
           QWCR+LGGCGHVYHRKCID+WLVRVSACPLCR CVRLDMEE  IDCVSSRN+E+ YAL
Sbjct: 176 QWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 233

[Close]

BLAST of Tan0018396 vs. ExPASy TrEMBL
Match: A0A6J1HSE6 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111465699 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.3e-77
Identity = 149/175 (85.14%), Postives = 161/175 (92.00%), Query Frame = 0


Query: 1   MPLQDSAATHGGDPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVAS 60
           MPLQDS A + GDP PPPKPE KVLSLLLKV+IMI+LTTLFFVFLGLATALLLI+ CVAS
Sbjct: 1   MPLQDSTAANAGDP-PPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVAS 60

Query: 61  ALH-RRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQW 120
            LH RRRRRHR R QF+DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFRKGQW
Sbjct: 61  VLHRRRRRRHRHRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQW 120

Query: 121 CRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYA 175
           CRKLGGCGHVYHRKCID+WLVRVSACPLCRS VRLDMEE+++DC +SR+YEILYA
Sbjct: 121 CRKLGGCGHVYHRKCIDSWLVRVSACPLCRSPVRLDMEENQMDCANSRSYEILYA 174

[Close]

BLAST of Tan0018396 vs. ExPASy TrEMBL
Match: A0A6J1FIL3 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111444262 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.5e-76
Identity = 148/175 (84.57%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 1   MPLQDSAATHGGDPAPPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVAS 60
           MPLQDS A   GDP PPPKPE KVLSLLLKV+IMI+LTTLFFVFLGLATALLLI+ CVAS
Sbjct: 1   MPLQDSTAALAGDP-PPPKPEAKVLSLLLKVSIMIVLTTLFFVFLGLATALLLIYPCVAS 60

Query: 61  ALH-RRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQW 120
            LH RRRRRHRRR QF+DSSSGFS+RDLKKLLQFRFSNWVNPHSQIDC ICL GFRKGQW
Sbjct: 61  VLHRRRRRRHRRRSQFTDSSSGFSNRDLKKLLQFRFSNWVNPHSQIDCPICLGGFRKGQW 120

Query: 121 CRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCVRLDMEEDRIDCVSSRNYEILYA 175
           CRKLGGCGH+YHRKCID+WLVRVSACPLCRS VRLDMEE+++DC + R+YEILYA
Sbjct: 121 CRKLGGCGHIYHRKCIDSWLVRVSACPLCRSSVRLDMEENQMDCANYRSYEILYA 174

[Close]

BLAST of Tan0018396 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 9.3e-34
Identity = 78/145 (53.79%), Postives = 100/145 (68.97%), Query Frame = 0


Query: 16  PPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRRHRRRFQF 75
           PPPKP+T++LSL L   IM  +  LF V +G+A+ L+L  L   S+LHR  RR RRR + 
Sbjct: 21  PPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLL--LSSLHRHHRR-RRRNRR 80

Query: 76  SDSSSGFSSRDLKKLLQFRFSN-WVNPHSQIDCSICLDGFRKGQWCRKLGGCGHVYHRKC 135
            +SS G SSR +KKL QF+FS        + DC +C DGFR+GQWCR L GCGHV+HRKC
Sbjct: 81  QESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKC 140

Query: 136 IDAWLVRVSACPLCRSCVRLDMEED 160
           +D WL++ S CP+CR+ VRL  EED
Sbjct: 141 VDTWLLKASTCPICRARVRL-WEED 161

[Close]

BLAST of Tan0018396 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-24
Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 1   MPLQDSAATHGGDPAPPPKPE-----TKVLS--LLLKVTIMILLTTLFFVFLGLATALLL 60
           +P   S +       PPPK       TK+LS  L+  + I + +T   F+   L      
Sbjct: 5   IPYDGSISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFF 64

Query: 61  IHLCVASALHRRRRRHRRRFQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDG 120
                    +R R R  RR ++SD   G S R +K+L QF++    + +   DC +C+DG
Sbjct: 65  AFYWFLQRNYRHRLRRHRRHEYSD---GLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDG 124

Query: 121 FRKGQWCRKLGGCGHVYHRKCIDAWLVRVSACPLCRSCV 153
           FR+GQWCRKL  CGHV+HRKC+D WL++VS CP+CR  V
Sbjct: 125 FRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICRDRV 160

[Close]

BLAST of Tan0018396 vs. TAIR 10
Match: AT3G20395.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-11
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 73  FQFSDSSSGFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRKLGGCGHVYHR 132
           + F+    G S   ++ +    F N     ++  CSICL  + +G+  RKL  CGH +H 
Sbjct: 139 YDFNHEKKGLSKSSIQNIPM--FYNRSEHQTKSSCSICLQDWEEGEVGRKLARCGHTFHM 198

Query: 133 KCIDAWLVRVSACPLCR 150
            CID WL+R   CP+CR
Sbjct: 199 NCIDEWLLRQETCPICR 213

[Close]

BLAST of Tan0018396 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 48/150 (32.00%), Postives = 69/150 (46.00%), Query Frame = 0


Query: 14  PAPPPKPETKVLSLLLKVTIMILLTTLFFV------FLGLATALLLIHLCVASALHRRRR 73
           P PPP+P +  L   + +TI ILL  LFF+      F   A +        +    R  R
Sbjct: 36  PTPPPQPPS-ALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTRSSR 95

Query: 74  RHRRRFQFSDSSS-------GFSSRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWC 133
              RR   S   S       G  S+ ++ L  +R++      ++ DC ICL  F +G+  
Sbjct: 96  MSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNE-DCVICLSDFEEGETV 155

Query: 134 RKLGGCGHVYHRKCIDAWLVRVSACPLCRS 151
           + +  CGHV+H  C+D WL     CPLCRS
Sbjct: 156 KVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of Tan0018396 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-08
Identity = 43/146 (29.45%), Postives = 64/146 (43.84%), Query Frame = 0


Query: 15  APPPKPETKVLSLLLKVTIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRRHRRRFQ 74
           APPP+P  ++++    + +++             +ALL   +CVA      R    RRF 
Sbjct: 12  APPPQPSEEMIAAESDMVVIL-------------SALLCALICVAGLAAVVRCAWLRRFT 71

Query: 75  FSDSS----SGFSSRDLKKLLQFRFS-------NWVNPHSQIDCSICLDGFRKGQWCRKL 134
               S     G   + L+ L +  F+                +C+ICL  F  G+  R L
Sbjct: 72  AGGDSPSPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVL 131

Query: 135 GGCGHVYHRKCIDAWLVRVSACPLCR 150
             CGH +H +CID WLV  S+CP CR
Sbjct: 132 PLCGHSFHVECIDKWLVSRSSCPSCR 144

The following BLAST results are available for this feature:

BLAST of Tan0018396 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV51	1.3e-32	53.79	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q9M0C3	2.5e-23	38.36	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q8LBA0	5.9e-09	35.62	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]
Q9SJJ7	2.2e-08	32.00	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
Q9FKX5	2.9e-08	38.03	NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV...	[more]

BLAST of Tan0018396 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889631.1	3.1e-79	85.96	RING-H2 finger protein ATL56-like [Benincasa hispida]	[more]
XP_008452306.1	6.8e-79	84.83	PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 fin...	[more]
XP_004149098.1	3.4e-78	84.27	RING-H2 finger protein ATL56 [Cucumis sativus]	[more]
XP_023538017.1	6.4e-77	85.14	RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965979.1	1.1e-76	85.14	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]

BLAST of Tan0018396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFV1	3.3e-79	84.83	RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BTK8	3.3e-79	84.83	RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1	[more]
A0A0A0LJ61	1.6e-78	84.27	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 P...	[more]
A0A6J1HSE6	5.3e-77	85.14	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111465699 PE...	[more]
A0A6J1FIL3	1.5e-76	84.57	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111444262 ...	[more]

BLAST of Tan0018396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18670.1	9.3e-34	53.79	RING/U-box superfamily protein	[more]
AT4G30370.1	1.8e-24	38.36	RING/U-box superfamily protein	[more]
AT3G20395.1	2.9e-11	36.36	RING/U-box superfamily protein	[more]
AT2G27940.1	1.6e-09	32.00	RING/U-box superfamily protein	[more]
AT2G17450.1	3.9e-08	29.45	RING-H2 finger A3A	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 6.0E-7 score: 39.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 1.5E-12 score: 47.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 12.164712
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 82..158 e-value: 3.7E-18 score: 66.5
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 11..174
None	No IPR available	PANTHER	PTHR46539:SF9	RING-H2 FINGER PROTEIN ATL56	coord: 11..174
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 86..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018396.1	Tan0018396.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane