Tan0018303 (gene) Snake gourd v1

Overview


Name	Tan0018303
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 65971312 .. 65971554 (+)
RNA-Seq Expression	Tan0018303
Synteny	Tan0018303

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGGTCTTCAAGCACGTCTCGGAACTTCGAAGAGTTCTCGGTCGAATTGGCACCGGGTTTCATCAGTTCCCCACCATTGAAGAATGAAGTTCCTGATCTTTTGCCAGTGTTTAAGAGTAATACCTCCAAGAAAGAAATAGGGTCGCATTTTAAATCTTCAGGAGAAAATGCTGTTCATCTAATTCCTCTTATTCTGTTTCTTTCTGCTTTAATCCTTTGGGTTTGTTCATCCAGGTAA

mRNA sequence

ATGCATAGGTCTTCAAGCACGTCTCGGAACTTCGAAGAGTTCTCGGTCGAATTGGCACCGGGTTTCATCAGTTCCCCACCATTGAAGAATGAAGTTCCTGATCTTTTGCCAGTGTTTAAGAGTAATACCTCCAAGAAAGAAATAGGGTCGCATTTTAAATCTTCAGGAGAAAATGCTGTTCATCTAATTCCTCTTATTCTGTTTCTTTCTGCTTTAATCCTTTGGGTTTGTTCATCCAGGTAA

Coding sequence (CDS)

ATGCATAGGTCTTCAAGCACGTCTCGGAACTTCGAAGAGTTCTCGGTCGAATTGGCACCGGGTTTCATCAGTTCCCCACCATTGAAGAATGAAGTTCCTGATCTTTTGCCAGTGTTTAAGAGTAATACCTCCAAGAAAGAAATAGGGTCGCATTTTAAATCTTCAGGAGAAAATGCTGTTCATCTAATTCCTCTTATTCTGTTTCTTTCTGCTTTAATCCTTTGGGTTTGTTCATCCAGGTAA

Protein sequence

MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFKSNTSKKEIGSHFKSSGENAVHLIPLILFLSALILWVCSSR

Homology

[Close]

BLAST of Tan0018303 vs. NCBI nr
Match: KAG7021797.1 (hypothetical protein SDJN02_15525, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 5.2e-26
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVP-DLLPVFKSNTSKKEIGSHFKSSGENA 60
          MHRSSSTSRNF+E+SV++ PGF SSPPLKNE P DLLP+FK +T KKE+G HFK  G+NA
Sbjct: 1  MHRSSSTSRNFDEYSVDMPPGFTSSPPLKNEAPDDLLPLFKIDTPKKEMGPHFKPPGQNA 60

Query: 61 VHLIPLILFLSALILWVCSSR 81
          VHLIPLIL LSALILW+CSSR
Sbjct: 61 VHLIPLILLLSALILWICSSR 81

[Close]

BLAST of Tan0018303 vs. NCBI nr
Match: KAG6587911.1 (hypothetical protein SDJN03_16476, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 5.2e-26
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVP-DLLPVFKSNTSKKEIGSHFKSSGENA 60
          MHRSSSTSRNF+E+SV++ PGF SSPPLKNE P DLLP+FK +T KKE+G HFK  G+NA
Sbjct: 1  MHRSSSTSRNFDEYSVDMPPGFTSSPPLKNEAPDDLLPLFKIDTPKKEMGPHFKPPGQNA 60

Query: 61 VHLIPLILFLSALILWVCSSR 81
          VHLIPLIL LSALILW+CSSR
Sbjct: 61 VHLIPLILLLSALILWICSSR 81

[Close]

BLAST of Tan0018303 vs. NCBI nr
Match: KAE8653076.1 (hypothetical protein Csa_019861 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 4.6e-22
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFKSNT-SKKEIGSHFKSSGENA 60
          M+RSSSTSR+F EFSV+L P  ISSPPLKNE   +LP+FKSN+ +KKE+GS FKS GENA
Sbjct: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60

Query: 61 VHLIPLILFLSALILWVCSS 80
          VHLIPL LFL ALILWVCS+
Sbjct: 61 VHLIPLTLFLCALILWVCST 80

[Close]

BLAST of Tan0018303 vs. NCBI nr
Match: KAA0046741.1 (hypothetical protein E6C27_scaffold216G00220 [Cucumis melo var. makuwa] >TYK14518.1 hypothetical protein E5676_scaffold15G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFKSNT-SKKEIGSHFKSSGENA 60
          M+RSSSTSR+F+EFSV+L P  ISSPPLKNE   +LP+FKSN+ +KKE+G  FKS G NA
Sbjct: 1  MYRSSSTSRSFDEFSVDLLPDSISSPPLKNEASSVLPLFKSNSDAKKEMGLQFKSPGVNA 60

Query: 61 VHLIPLILFLSALILWVCSSR 81
          VHLIPL LFL ALILWVCS+R
Sbjct: 61 VHLIPLTLFLCALILWVCSTR 81

[Close]

BLAST of Tan0018303 vs. NCBI nr
Match: KAF3967602.1 (hypothetical protein CMV_008418 [Castanea mollissima])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFK--SNTSKKEIGSHFKSSGEN 60
          MHRSSSTSR  +EF V L P  + SPPLK      LP++   S+T+KK+I  + KSSGEN
Sbjct: 1  MHRSSSTSRASDEFLVNLLPPAMDSPPLKATTSSDLPMYNSISDTTKKDIALYRKSSGEN 60

Query: 61 AVHLIPLILFLSALILWVCS 79
          A+H+IPL+L L  LILW+ S
Sbjct: 61 AIHIIPLVLILCVLILWIFS 80

[Close]

BLAST of Tan0018303 vs. ExPASy TrEMBL
Match: A0A0A0LTP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G305730 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.5e-23
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFKSNT-SKKEIGSHFKSSGENA 60
          M+RSSSTSR+F EFSV+L P  ISSPPLKNE   +LP+FKSN+ +KKE+GS FKS GENA
Sbjct: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDAKKEMGSQFKSPGENA 60

Query: 61 VHLIPLILFLSALILWVCSSR 81
          VHLIPL LFL ALILWVCS+R
Sbjct: 61 VHLIPLTLFLCALILWVCSTR 81

[Close]

BLAST of Tan0018303 vs. ExPASy TrEMBL
Match: A0A5A7TZH0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00330 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.4e-22
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFKSNT-SKKEIGSHFKSSGENA 60
          M+RSSSTSR+F+EFSV+L P  ISSPPLKNE   +LP+FKSN+ +KKE+G  FKS G NA
Sbjct: 1  MYRSSSTSRSFDEFSVDLLPDSISSPPLKNEASSVLPLFKSNSDAKKEMGLQFKSPGVNA 60

Query: 61 VHLIPLILFLSALILWVCSSR 81
          VHLIPL LFL ALILWVCS+R
Sbjct: 61 VHLIPLTLFLCALILWVCSTR 81

[Close]

BLAST of Tan0018303 vs. ExPASy TrEMBL
Match: A0A438EIF2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086512 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFK--SNTSKKEIGSHFKSSGEN 60
          M+RS+STSR  +EF V L P  + S PLK    + LP++   S+ +KKE+  H KSSGEN
Sbjct: 1  MYRSASTSRASDEFLVNLLPAAMGSTPLKTSASEDLPMYDPISDATKKEMSMHHKSSGEN 60

Query: 61 AVHLIPLILFLSALILWVCS 79
          A+HLIPL+L L ALILWV S
Sbjct: 61 AIHLIPLLLILCALILWVFS 80

[Close]

BLAST of Tan0018303 vs. ExPASy TrEMBL
Match: A0A059CNE3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01116 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFK---SNTSKKEIGSHFKSSGE 60
          MHR SS SR+ +EF V L P   +   L+N   + LP+F+   S+ +KKE G+H +S GE
Sbjct: 1  MHRLSSGSRDSDEFLVNLLPASAALSALRNSSANDLPLFRQPSSDLTKKESGAHLRSPGE 60

Query: 61 NAVHLIPLILFLSALILWVCS 79
           A+HLIP++LFL AL LW+CS
Sbjct: 61 KAIHLIPVVLFLCALTLWLCS 81

[Close]

BLAST of Tan0018303 vs. ExPASy TrEMBL
Match: A0A067KJC2 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13285 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.1e-11
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFKSNT--SKKEIGSHFKSSGEN 60
          MHRSSSTSR  +E SV  +       P+K      LP++KS++  SKKEIG H KS GEN
Sbjct: 1  MHRSSSTSRAADELSVNFSSDDNIVSPVKTLSSTDLPIYKSSSDASKKEIGLHQKSVGEN 60

Query: 61 AVHLIPLILFLSALILWVCS 79
          AVHLIPLIL L ALILW+ S
Sbjct: 61 AVHLIPLILLLCALILWLFS 80

[Close]

BLAST of Tan0018303 vs. TAIR 10
Match: AT5G20045.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 4.9e-06
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPDLLPVFKSNTSKKEIGSH---FKS-SG 60
          M R   +SR  EEF + L+        + +  PD L V+  + +KKE+  H   +KS +G
Sbjct: 1  MQRLQISSRPSEEFLINLS--------VDSASPDGLVVY-DDIAKKELSLHNNSYKSANG 60

Query: 61 ENAVHLIPLILFLSALILWVCSS 80
          E A+HLIP++LFL   +LWV SS
Sbjct: 61 ERAIHLIPIVLFLCGFMLWVFSS 74

[Close]

BLAST of Tan0018303 vs. TAIR 10
Match: AT4G16840.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35658.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 34/86 (39.53%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPP-------LKNEVPDLLPVFKSNT-SKKEIGSHF 60
          M RS+S SR  + F     P    SPP       ++++V  LLP +  N+ + K   S F
Sbjct: 1  MRRSASGSRVLDHF-----PATSRSPPRSQSVTAMEDDVELLLPRYDPNSQAGKREKSRF 60

Query: 61 KSSGENAVHLIPLILFLSALILWVCS 79
          + S EN +HLIPLIL L   ILW+ S
Sbjct: 61 RFS-ENVIHLIPLILLLCVAILWLSS 80

[Close]

BLAST of Tan0018303 vs. TAIR 10
Match: AT2G35658.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.0e-04
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPD-----LLPVFKSNTSK-KEIGSHFKS 60
          M RS+S S   ++ S        S P +K          LLP +  N+   K+  S F+S
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKSRFRS 60

Query: 61 SGENAVHLIPLILFLSALILWVCSS 80
          + ENA+H IP++L L A+ILW+ S+
Sbjct: 61 A-ENAIHFIPIVLILCAVILWMFSN 84

[Close]

BLAST of Tan0018303 vs. TAIR 10
Match: AT2G35658.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.0e-04
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPD-----LLPVFKSNTSK-KEIGSHFKS 60
          M RS+S S   ++ S        S P +K          LLP +  N+   K+  S F+S
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKSRFRS 60

Query: 61 SGENAVHLIPLILFLSALILWVCSS 80
          + ENA+H IP++L L A+ILW+ S+
Sbjct: 61 A-ENAIHFIPIVLILCAVILWMFSN 84

[Close]

BLAST of Tan0018303 vs. TAIR 10
Match: AT2G35658.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.0e-04
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 1  MHRSSSTSRNFEEFSVELAPGFISSPPLKNEVPD-----LLPVFKSNTSK-KEIGSHFKS 60
          M RS+S S   ++ S        S P +K          LLP +  N+   K+  S F+S
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNKSRFRS 60

Query: 61 SGENAVHLIPLILFLSALILWVCSS 80
          + ENA+H IP++L L A+ILW+ S+
Sbjct: 61 A-ENAIHFIPIVLILCAVILWMFSN 84

The following BLAST results are available for this feature:

BLAST of Tan0018303 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018303 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021797.1	5.2e-26	76.54	hypothetical protein SDJN02_15525, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587911.1	5.2e-26	76.54	hypothetical protein SDJN03_16476, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653076.1	4.6e-22	73.75	hypothetical protein Csa_019861 [Cucumis sativus]	[more]
KAA0046741.1	1.3e-21	71.60	hypothetical protein E6C27_scaffold216G00220 [Cucumis melo var. makuwa] >TYK1451...	[more]
KAF3967602.1	1.9e-12	55.00	hypothetical protein CMV_008418 [Castanea mollissima]	[more]

BLAST of Tan0018303 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTP3	4.5e-23	74.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G305730 PE=4 SV=1	[more]
A0A5A7TZH0	6.4e-22	71.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A438EIF2	1.2e-12	55.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086512 PE=4 SV=1	[more]
A0A059CNE3	3.9e-11	49.38	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01116 PE=4 SV...	[more]
A0A067KJC2	5.1e-11	57.50	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13285 PE=4 SV=1	[more]

BLAST of Tan0018303 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20045.1	4.9e-06	39.76	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT4G16840.1	1.6e-04	39.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G35658.1	6.0e-04	35.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.2	6.0e-04	35.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.3	6.0e-04	35.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34189	TRANSMEMBRANE PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR34189:SF10	TRANSMEMBRANE PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018303.1	Tan0018303.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane