Tan0018111 (gene) Snake gourd v1

Overview


Name	Tan0018111
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG05: 7919049 .. 7919584 (-)
RNA-Seq Expression	Tan0018111
Synteny	Tan0018111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCCCTATCAGAAGAACAAGCCAATTCTAGTACACCGATGACGGACGAAGAAGTTGTGGCGACCGTTCTTGGAGCACGATCGTCCTATGTTAAAGGAATGGGATATAGACCAAAGCCACCACCATCTCAGAAGAAATCATACTCACAAGACTACGTTCAATCTCTAGAGGCCCACCTTGCACAAACACAAGAACTGTTGCAGAGTCAACAACAGGAAAATGAAAAAATGGAGCAGCGAATGGAACAAAGAATGGAACAACGGATTGAAGAACGGATGGAGATGCAACGCATGGAGTATGAAAGAAGATTTGAGCAAATGGGAGAACTTTTAGCAAGGTTTACTGGAGCAAACCCATCACTTAGTAAGGTATGATTATTATGGTTCTTAAAATTCTGAATTCGTTTGAGAGTTTGTTAGAGATTAGAAGTTGCGTTCCTGTTTCAGGATTCCATAGTTCTTATGATGATGTTTCTGTTTCTGAGCTTTTTGAGACTTTGTTCAAGAATGGAAGTTGTGTTCCTGTTTCTTAA

mRNA sequence

ATGGTGGCCCTATCAGAAGAACAAGCCAATTCTAGTACACCGATGACGGACGAAGAAGTTGTGGCGACCGTTCTTGGAGCACGATCGTCCTATGTTAAAGGAATGGGATATAGACCAAAGCCACCACCATCTCAGAAGAAATCATACTCACAAGACTACGTTCAATCTCTAGAGGCCCACCTTGCACAAACACAAGAACTGTTGCAGAGTCAACAACAGGAAAATGAAAAAATGGAGCAGCGAATGGAACAAAGAATGGAACAACGGATTGAAGAACGGATGGAGATGCAACGCATGGAGTATGAAAGAAGATTTGAGCAAATGGGAGAACTTTTAGCAAGGTTTACTGGAGCAAACCCATCACTTAGTAAGAGTTTGTTAGAGATTAGAAGTTGCGTTCCTGTTTCAGGATTCCATAGTTCTTATGATGATGTTTCTGTTTCTGAGCTTTTTGAGACTTTGTTCAAGAATGGAAGTTGTGTTCCTGTTTCTTAA

Coding sequence (CDS)

ATGGTGGCCCTATCAGAAGAACAAGCCAATTCTAGTACACCGATGACGGACGAAGAAGTTGTGGCGACCGTTCTTGGAGCACGATCGTCCTATGTTAAAGGAATGGGATATAGACCAAAGCCACCACCATCTCAGAAGAAATCATACTCACAAGACTACGTTCAATCTCTAGAGGCCCACCTTGCACAAACACAAGAACTGTTGCAGAGTCAACAACAGGAAAATGAAAAAATGGAGCAGCGAATGGAACAAAGAATGGAACAACGGATTGAAGAACGGATGGAGATGCAACGCATGGAGTATGAAAGAAGATTTGAGCAAATGGGAGAACTTTTAGCAAGGTTTACTGGAGCAAACCCATCACTTAGTAAGAGTTTGTTAGAGATTAGAAGTTGCGTTCCTGTTTCAGGATTCCATAGTTCTTATGATGATGTTTCTGTTTCTGAGCTTTTTGAGACTTTGTTCAAGAATGGAAGTTGTGTTCCTGTTTCTTAA

Protein sequence

MVALSEEQANSSTPMTDEEVVATVLGARSSYVKGMGYRPKPPPSQKKSYSQDYVQSLEAHLAQTQELLQSQQQENEKMEQRMEQRMEQRIEERMEMQRMEYERRFEQMGELLARFTGANPSLSKSLLEIRSCVPVSGFHSSYDDVSVSELFETLFKNGSCVPVS

Homology

[Close]

BLAST of Tan0018111 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 1   MVALSEEQANSSTPMTDEEVVATVLGARSSYVKGMGYRPKPPPSQKKS--YSQDYVQSLE 60
           M+ L    A+     T+EE++ TVLG RS+YV GMGY PKP  ++  S  YS +YV+SLE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  AHLAQTQELLQSQQQENEKMEQRMEQRMEQRIEERMEMQRMEYERRFEQMGELLARFTGA 120
           A L              +K E+ M +  +++I++ +E Q  E+ R+  +M ++     G 
Sbjct: 172 ARL--------------QKHEEEMARTTQEQIQKALEAQSQEFNRKLLEMQQMFLS-GGG 227

Query: 121 NPSLSKSLLEI 130
           + S SK   EI
Sbjct: 232 SSSTSKVCREI 227

[Close]

BLAST of Tan0018111 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-04
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 1   MVALSEEQANSSTPMTDEEVVATVLGARSSYVKGMGYRPKPPPSQKKS--YSQDYVQSLE 60
           M+ L    A+     T+EE++ TVLG RS+YV GMGY PKP  ++  S  YS +YV+SLE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  AHLAQTQELLQSQQQENEKMEQRMEQRMEQRIEERMEMQRMEYERRFEQMGELLARFTGA 120
           A L              +K E+ M +  +++I++ +E Q  E+ R+  +M ++     G 
Sbjct: 167 ARL--------------QKHEEEMARTTQEQIQKALEAQSQEFNRKLLEMQQMFLS-GGG 217

Query: 121 NPSLSK 125
           + S SK
Sbjct: 227 SSSTSK 217

[Close]

BLAST of Tan0018111 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 1   MVALSEEQANSSTPMTDEEVVATVLGARSSYVKGMGYRPKPPPSQKKS--YSQDYVQSLE 60
           M+ L    A+     T+EE++ TVLG RS+YV GMGY PKP  ++  S  YS +YV+SLE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  AHLAQTQELLQSQQQENEKMEQRMEQRMEQRIEERMEMQRMEYERRFEQMGELLARFTGA 120
           A L              +K E+ M +  +++I++ +E Q  E+ R+  +M ++     G 
Sbjct: 172 ARL--------------QKHEEEMARTTQEQIQKALEAQSQEFNRKLLEMQQMFLS-GGG 227

Query: 121 NPSLSKSLLEI 130
           + S SK   EI
Sbjct: 232 SSSTSKVCREI 227

[Close]

BLAST of Tan0018111 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 1   MVALSEEQANSSTPMTDEEVVATVLGARSSYVKGMGYRPKPPPSQKKS--YSQDYVQSLE 60
           M+ L    A+     T+EE++ TVLG RS+YV GMGY PKP  ++  S  YS +YV+SLE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  AHLAQTQELLQSQQQENEKMEQRMEQRMEQRIEERMEMQRMEYERRFEQMGELLARFTGA 120
           A L              +K E+ M +  +++I++ +E Q  E+ R+  +M ++     G 
Sbjct: 167 ARL--------------QKHEEEMARTTQEQIQKALEAQSQEFNRKLLEMQQMFLS-GGG 217

Query: 121 NPSLSK 125
           + S SK
Sbjct: 227 SSSTSK 217

The following BLAST results are available for this feature:

BLAST of Tan0018111 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018111 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148911.1	1.0e-04	35.11	uncharacterized protein LOC111017461 [Momordica charantia]	[more]
XP_022143616.1	3.0e-04	34.92	uncharacterized protein LOC111013476 [Momordica charantia]	[more]

BLAST of Tan0018111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6S9	5.0e-05	35.11	uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1CQT5	1.5e-04	34.92	uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Tan0018111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018111.1	Tan0018111.1	mRNA