Tan0017975 (gene) Snake gourd v1

Overview
NameTan0017975
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionglycine-rich cell wall structural protein 1.0-like
LocationLG03: 44362301 .. 44362537 (+)
RNA-Seq ExpressionTan0017975
SyntenyTan0017975
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGGCGGTGGAAAAGGTGGAGGAGGAGGCGGCGGCGGCGGTATCAGAGATGGAGGGGGTGGTGGCGGCAGTGCCAAGAGTGGAGGTGGGAGCGGCAAAGGAAGTGGCGGTGGAAATGGAATGATGGTTGCTCCTGGAAAAGGAGGAGATGTTTATATCGCACGAGATGCATTCGAACAAAATACTAAAGGTTATTTTGATGATCATCGTGCATCTCAAAAGAGTGGCAAGTAG

mRNA sequence

ATGACCGGCGGTGGAAAAGGTGGAGGAGGAGGCGGCGGCGGCGGTATCAGAGATGGAGGGGGTGGTGGCGGCAGTGCCAAGAGTGGAGGTGGGAGCGGCAAAGGAAGTGGCGGTGGAAATGGAATGATGGTTGCTCCTGGAAAAGGAGGAGATGTTTATATCGCACGAGATGCATTCGAACAAAATACTAAAGGTTATTTTGATGATCATCGTGCATCTCAAAAGAGTGGCAAGTAG

Coding sequence (CDS)

ATGACCGGCGGTGGAAAAGGTGGAGGAGGAGGCGGCGGCGGCGGTATCAGAGATGGAGGGGGTGGTGGCGGCAGTGCCAAGAGTGGAGGTGGGAGCGGCAAAGGAAGTGGCGGTGGAAATGGAATGATGGTTGCTCCTGGAAAAGGAGGAGATGTTTATATCGCACGAGATGCATTCGAACAAAATACTAAAGGTTATTTTGATGATCATCGTGCATCTCAAAAGAGTGGCAAGTAG

Protein sequence

MTGGGKGGGGGGGGGIRDGGGGGGSAKSGGGSGKGSGGGNGMMVAPGKGGDVYIARDAFEQNTKGYFDDHRASQKSGK
Homology
BLAST of Tan0017975 vs. NCBI nr
Match: XP_008465297.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-06
Identity = 53/91 (58.24%), Postives = 61/91 (67.03%), Query Frame = 0

Query: 1  MTGGGKGGGGGGGG----GIRDGGGGGGSAKSGGGSG---------KGSGGGNGMMVAPG 60
          M GGGK GGGGGGG    G+  GGGGGGS   GGG G          G GGG+G MVAPG
Sbjct: 1  MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG 60

Query: 61 KGGDVYIARDAFEQNTKGYFDDHRASQKSGK 79
           GG V+I+RDAFE N++GYF D RA++K GK
Sbjct: 61 TGGAVHISRDAFESNSRGYFQDFRAAEKGGK 91

BLAST of Tan0017975 vs. ExPASy TrEMBL
Match: A0A1S3CQ14 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103502951 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 53/91 (58.24%), Postives = 61/91 (67.03%), Query Frame = 0

Query: 1  MTGGGKGGGGGGGG----GIRDGGGGGGSAKSGGGSG---------KGSGGGNGMMVAPG 60
          M GGGK GGGGGGG    G+  GGGGGGS   GGG G          G GGG+G MVAPG
Sbjct: 1  MAGGGKSGGGGGGGSKAAGVGGGGGGGGSGSGGGGKGGSGGGSCGKGGGGGGHGTMVAPG 60

Query: 61 KGGDVYIARDAFEQNTKGYFDDHRASQKSGK 79
           GG V+I+RDAFE N++GYF D RA++K GK
Sbjct: 61 TGGAVHISRDAFESNSRGYFQDFRAAEKGGK 91

BLAST of Tan0017975 vs. ExPASy TrEMBL
Match: A0A6J1DFA1 (LOW QUALITY PROTEIN: keratin, type II cytoskeletal 1-like OS=Momordica charantia OX=3673 GN=LOC111019548 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 48/78 (61.54%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 1   MTGGGKGGGGGGGGGIRDGGGGGGSAKSGGGSGKGSGGGNGMMVAPGKGGDVYIARDAFE 60
           M GGGKGGGGGGGG    GGGGGG    GGGS  G GG +GMMVAPG GG  YI+R  FE
Sbjct: 60  MAGGGKGGGGGGGGK-GGGGGGGGGGGGGGGSKVGGGGNSGMMVAPGSGGSSYISRGGFE 119

Query: 61  QNTKGYFDDHRASQKSGK 79
            N  GYF +   ++KSGK
Sbjct: 120 SNPGGYFSNLHGAEKSGK 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_008465297.14.5e-0658.24PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
A0A1S3CQ142.2e-0658.24glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1DFA15.9e-0461.54LOW QUALITY PROTEIN: keratin, type II cytoskeletal 1-like OS=Momordica charantia... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0017975.1Tan0017975.1mRNA