Tan0017916 (gene) Snake gourd v1

Overview


Name	Tan0017916
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L19, chloroplastic-like
Location	LG05: 69194794 .. 69198023 (+)
RNA-Seq Expression	Tan0017916
Synteny	Tan0017916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCCTGATTTAGGGCTTTAGGCTCCAAGATCTCTTTTCACCTAGAGATTACAATAGCTCTCCCCCTTTGCGATCGGTGAGTATCTTCTTTTCCGGTTGGTTATTCGTTTGCTGGTGATCTGGAATAATCTTCGACATTTCCAACCATCTTGATCAGTGCAATTCCTTTCTCCCCTGCTTGTTATGTAACAATTCTATGAGATTTTTTTCCGTTTCTCATGGATTTTGTGTGGGTTATGCAGCGCCAGAATGCAAAGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAGTCGATTCGAGGTTATCCTCTGAATGGGGATGCAGCCTGTAGCTGCTCGGCGCCAATGTCGATGGAAAATAGTTTTACTGTTCCTCGTCTTTTTGGCTCTCCATATGGGTCTTTCAATAGTTACAGGTCTTTCTCGAAGTTGGGCAATCAATATTCGGAAGCCTTCGTATGTATTTCTGTCTATTTTAACTATTTTGGGCATTATGGTCGTTTACTAGTATGATTTTTTCTTGCGTTGTTTTTTCGAGGTTCCGTTCTGTAAAACTGCCTCGGGTTTTTTTTAAAATGTGATTAGCGACAATTAGTCTAGTTCAAATTACAAGCTTTTATGAATTCGTTTATGTTTCATGTTTAAGTTCAGAAGCAATGAGACAAAATCAAATGACATGATATATCTTTGCCAACCCCTGATTGGCGGTAGGGAAGAGTGTAACATGTATAATCTTATAAATTGTGTACGTTATGCACGTTTGTCCAAGATTGGCCAGATGTGATTTCTGCTAAATGTTTTATTGCTAAAAAGTTATATGTAGAGTATAAGTGCTTTCAACTGGAACTGGAACTTGCTCCCGAGTTCAGTAATGGCTTAGTCAACAAAACTATGAACTTCACTATTGTCTTAGTTGTTATGTATCCTTTTTTCCTTCACAACAAGTAAAGTATGGAAAACCACTTGCTCATTCTCTAATTAGTCTGCCTGAAAAAAATGTGTTTTTCCTAAATGTTTTCTTTTCCACCTCTTTTCTTTCCATATTGCTGGTTTTTTATTTACAAAAAAGAACAGGAAAAATAGAGAAACTATCAACTACCCTCGTGAGATTTTTTTCGGAAACTTTTGTATACGAACTTTCTGTTGGTTTATGGTGCTCGTTGGAAGCACCATCTATTTATTTAAGAGTCTGTTTTGGAATATATCGTGTCGTAACAATTTATTCAACTATTTAGCAGAGAAATATGGGATCTCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACCTGCTCAGCATTCCAAAGTCCCAGGCCATATTTATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCGACCACAAGTTCAATGAAATCAGCTCCACAAGGATCTCCTGCAATTGATACTGATATAACTCCTCGGATCAAATTTAAGAGGCTTGATAAAACCTCAAAACACATAATGCAGGTATTCACATTTCAAAGTATTTTTGGAAAACAAGTAATTTCATTCCCATCTGTTTGATTTCAATATATTGTTTTTTCTCACTGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACAGAGAGAAATTCCCGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAGAGTTCATTTTAGTCAAATATTATATCATGTTGTTTTATTGGTTGTAGATAATGTTTTTATTCTAAAAAGCAGTTGTAGATGAGGTTATTGAACAGTTTTCTGGCTTTTCCTGCCATGTTTGACCAGGAAGTACCTGAGAACAAGCGACGTGTCTCAACATTGAAAGGCATTGTAATAGCCAGACGGAATGCTGGTCTAAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGTTGGGGTTGAGTCTCTCTTCCCTCTGTAAGTAATGCCGATTTATTATTATTATTGTTATTTTCTGCAAAAGTTACCTTCCCAATTTCATTGTTTTTGTCCCTGCTCAACTTTGTGATGAGGAAGCTTATTCTGTGTTTATCTTTTGGTCATGCCCTCTAGATTAGATCAAGGAATGTAATGGGGTTAAAGAATTTAATACAAATGATTAACTTTCAGTCTTCAGACTCATACCTTTATAAATTTTAAGTCTTTAAATTCACACATGCCGTATGCCGTCTGGCATGCTTTAAATTATTTATTATAGTTCAGTGGGCATTCATGCAACATCTTATAAGAAAGAGTCCCAACAAAGTAATACAATTCAGATGCAAATGGTACATGTTGAATAATAATAACAGAGGAATAATAATAACAGAGGAAGAGGAACGCACTTCTTGTTGAAGTTGGTGTATTAATACATATGTGTAGTCTTCCTCTTTATTGATGTTCTTTGTCGGATGTCCCCGAAGGGACTTGATAGATGTTCTTTGTCAGTAAAACTAAATCAAACTCTTAGTTTTGTGAGAGCTTGAATACTTGCGATCAGTTTAACTAGTTTTGGGGATCCATAGTTAGTTTTGGCCTGTCTCTTTCTGATGGTTCTTTGCTTATGACTAAACAAGTGGTTGATGCATGACAGATACTCACCAAACATAAAAGAGATTAAGGTGTTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCAATAGCAACCTTTCTGTCCAATGGGATCAGAGGTGTGTCCGTAACATGATGAGTAATCATTTTTGGCAAGAAATCTCACGAGTTTTCATGATTATCTTATCCTGTTTTAACCATGGAGAACCGACCTGAGAATTTAATGCAGCACTCAGCTTTGCTGAAATAAAAACAAAATGAAGTCGACATTGATTGCCTCTAGAAGAAATATTCTTTCTTTTAATGATTAGTGGTTCTTGTTCAAGCAAACCATGTCATCATTTTATCTTATTGGTGATCGGTTGCCTTATTTCTTCCCCTTTTTCTGCAATATCAAAAAGTTTACCCATAAAGTGTAATTGGAAACATACAGCTTTCTGATATTAGGCGGTTTGTAATGTGTGTGCCTTATCTTATACATTCCATGGATCAACATTATCATCCTTTTGAATGAAGGATCAATTACTCATCATTTACAGCGTTTACATTACTTGCAATCCTTCCCCATGTTGTTCCCTATTGTAATTCTTATTTTGACTATCAATTCGACATGAA

mRNA sequence

GTTTCCTGATTTAGGGCTTTAGGCTCCAAGATCTCTTTTCACCTAGAGATTACAATAGCTCTCCCCCTTTGCGATCGCGCCAGAATGCAAAGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAGTCGATTCGAGGTTATCCTCTGAATGGGGATGCAGCCTGTAGCTGCTCGGCGCCAATGTCGATGGAAAATAGTTTTACTGTTCCTCGTCTTTTTGGCTCTCCATATGGGTCTTTCAATAGTTACAGGTCTTTCTCGAAGTTGGGCAATCAATATTCGGAAGCCTTCAGAAATATGGGATCTCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACCTGCTCAGCATTCCAAAGTCCCAGGCCATATTTATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCGACCACAAGTTCAATGAAATCAGCTCCACAAGGATCTCCTGCAATTGATACTGATATAACTCCTCGGATCAAATTTAAGAGGCTTGATAAAACCTCAAAACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACAGAGAGAAATTCCCGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGTACCTGAGAACAAGCGACGTGTCTCAACATTGAAAGGCATTGTAATAGCCAGACGGAATGCTGGTCTAAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGTTGGGGTTGAGTCTCTCTTCCCTCTATACTCACCAAACATAAAAGAGATTAAGGTGTTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAAGCAATAGCAACCTTTCTGTCCAATGGGATCAGAGGTGTGTCCGTAACATGATGAGTAATCATTTTTGGCAAGAAATCTCACGAGTTTTCATGATTATCTTATCCTGTTTTAACCATGGAGAACCGACCTGAGAATTTAATGCAGCACTCAGCTTTGCTGAAATAAAAACAAAATGAAGTCGACATTGATTGCCTCTAGAAGAAATATTCTTTCTTTTAATGATTAGTGGTTCTTGTTCAAGCAAACCATGTCATCATTTTATCTTATTGGTGATCGGTTGCCTTATTTCTTCCCCTTTTTCTGCAATATCAAAAAGTTTACCCATAAAGTGTAATTGGAAACATACAGCTTTCTGATATTAGGCGGTTTGTAATGTGTGTGCCTTATCTTATACATTCCATGGATCAACATTATCATCCTTTTGAATGAAGGATCAATTACTCATCATTTACAGCGTTTACATTACTTGCAATCCTTCCCCATGTTGTTCCCTATTGTAATTCTTATTTTGACTATCAATTCGACATGAA

Coding sequence (CDS)

ATGCAAAGTTTTCGCAGAATTAATCAATTGGTACGAAGGCAAAGTCCCGATGCTCATTTCAAGTCGATTCGAGGTTATCCTCTGAATGGGGATGCAGCCTGTAGCTGCTCGGCGCCAATGTCGATGGAAAATAGTTTTACTGTTCCTCGTCTTTTTGGCTCTCCATATGGGTCTTTCAATAGTTACAGGTCTTTCTCGAAGTTGGGCAATCAATATTCGGAAGCCTTCAGAAATATGGGATCTCAAATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACCTGCTCAGCATTCCAAAGTCCCAGGCCATATTTATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCGACCACAAGTTCAATGAAATCAGCTCCACAAGGATCTCCTGCAATTGATACTGATATAACTCCTCGGATCAAATTTAAGAGGCTTGATAAAACCTCAAAACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACAGAGAGAAATTCCCGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGTACCTGAGAACAAGCGACGTGTCTCAACATTGA

Protein sequence

MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFNSYRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKVYLRTSDVSQH

Homology

[Close]

BLAST of Tan0017916 vs. NCBI nr
Match: KAG6573088.1 (50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312.8 bits (800), Expect = 2.2e-81
Identity = 163/190 (85.79%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFN 60
           MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N
Sbjct: 604 MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 663

Query: 61  S--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFSS 120
              +RSFSKLGNQY EAF++MGSQMEF+PS K VSSTCSAFQSPR +LFQLAEIAAPFSS
Sbjct: 664 GSLFRSFSKLGNQYPEAFKDMGSQMEFLPSVKRVSSTCSAFQSPRKHLFQLAEIAAPFSS 723

Query: 121 RGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDI 180
           RGIATTSS++SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDI
Sbjct: 724 RGIATTSSIESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAKREIPDI 783

Query: 181 KPGYIVQLKV 189
           KPGYIVQLKV
Sbjct: 784 KPGYIVQLKV 793

[Close]

BLAST of Tan0017916 vs. NCBI nr
Match: XP_022955270.1 (54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 311.2 bits (796), Expect = 6.3e-81
Identity = 162/190 (85.26%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFN 60
           MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 61  S--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFSS 120
              +RSFSKLGNQY EAF++MGSQMEF+PS K VSSTC AFQSP+ +LFQLAEIAAPFSS
Sbjct: 61  GSLFRSFSKLGNQYPEAFKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFSS 120

Query: 121 RGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDI 180
           RGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDI
Sbjct: 121 RGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAKREIPDI 180

Query: 181 KPGYIVQLKV 189
           KPGYIVQLKV
Sbjct: 181 KPGYIVQLKV 190

[Close]

BLAST of Tan0017916 vs. NCBI nr
Match: XP_022955269.1 (54S ribosomal protein subunit img1, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 306.6 bits (784), Expect = 1.6e-79
Identity = 162/191 (84.82%), Postives = 173/191 (90.58%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFN 60
           MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 61  S--YRSFSKLGNQYSEAF-RNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFS 120
              +RSFSKLGNQY EAF ++MGSQMEF+PS K VSSTC AFQSP+ +LFQLAEIAAPFS
Sbjct: 61  GSLFRSFSKLGNQYPEAFQKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFS 120

Query: 121 SRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPD 180
           SRGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPD
Sbjct: 121 SRGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAKREIPD 180

Query: 181 IKPGYIVQLKV 189
           IKPGYIVQLKV
Sbjct: 181 IKPGYIVQLKV 191

[Close]

BLAST of Tan0017916 vs. NCBI nr
Match: XP_023542739.1 (54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 4.5e-79
Identity = 160/190 (84.21%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFN 60
           MQ+FR+INQLVRRQS DAHFKSIRGYPLNGDA+C CSA MSME SFT  R FG+PY S N
Sbjct: 1   MQNFRKINQLVRRQSLDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRPFGNPYESLN 60

Query: 61  S--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFSS 120
              +RSFSKLGNQY EAF++MGSQMEF+PS K VSSTC AFQSPR +LFQLAEIAAPFSS
Sbjct: 61  GSLFRSFSKLGNQYPEAFKDMGSQMEFLPSGKRVSSTCPAFQSPRKHLFQLAEIAAPFSS 120

Query: 121 RGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDI 180
           RGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDI
Sbjct: 121 RGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAKREIPDI 180

Query: 181 KPGYIVQLKV 189
           KPGYIVQLKV
Sbjct: 181 KPGYIVQLKV 190

[Close]

BLAST of Tan0017916 vs. NCBI nr
Match: XP_022137703.1 (50S ribosomal protein L19, chloroplastic-like [Momordica charantia])

HSP 1 Score: 302.0 bits (772), Expect = 3.8e-78
Identity = 159/190 (83.68%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFN 60
           MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDA CSCSAPMSMEN FT+ R FG+PYGS N
Sbjct: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAGCSCSAPMSMENGFTIARPFGNPYGSLN 60

Query: 61  S--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFSS 120
               RSFSKL NQY EAF NMGSQ+EFV SRKHVSSTCS FQ PRP LFQLAE+A PFSS
Sbjct: 61  GSFLRSFSKLSNQYPEAFINMGSQVEFVSSRKHVSSTCSVFQRPRPLLFQLAEVAPPFSS 120

Query: 121 RGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDI 180
           RGIA TSS++S  Q SP I  DITPRIKFKRLDKTSKHIMQILDKEA+EEVKAQREIPDI
Sbjct: 121 RGIA-TSSVESVSQESPEITPDITPRIKFKRLDKTSKHIMQILDKEAIEEVKAQREIPDI 180

Query: 181 KPGYIVQLKV 189
           KPGYIVQLKV
Sbjct: 181 KPGYIVQLKV 189

[Close]

BLAST of Tan0017916 vs. ExPASy TrEMBL
Match: A0A6J1GUP7 (54S ribosomal protein subunit img1, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457281 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.1e-81
Identity = 162/190 (85.26%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFN 60
           MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 61  S--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFSS 120
              +RSFSKLGNQY EAF++MGSQMEF+PS K VSSTC AFQSP+ +LFQLAEIAAPFSS
Sbjct: 61  GSLFRSFSKLGNQYPEAFKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFSS 120

Query: 121 RGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDI 180
           RGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPDI
Sbjct: 121 RGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAKREIPDI 180

Query: 181 KPGYIVQLKV 189
           KPGYIVQLKV
Sbjct: 181 KPGYIVQLKV 190

[Close]

BLAST of Tan0017916 vs. ExPASy TrEMBL
Match: A0A6J1GVN3 (54S ribosomal protein subunit img1, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457281 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.5e-80
Identity = 162/191 (84.82%), Postives = 173/191 (90.58%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFN 60
           MQ+FRRINQLVRRQSPDAHFKSIRGYPLNGDA+C CSA MSME SFT  RLFG+PY S N
Sbjct: 1   MQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLN 60

Query: 61  S--YRSFSKLGNQYSEAF-RNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFS 120
              +RSFSKLGNQY EAF ++MGSQMEF+PS K VSSTC AFQSP+ +LFQLAEIAAPFS
Sbjct: 61  GSLFRSFSKLGNQYPEAFQKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFS 120

Query: 121 SRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPD 180
           SRGIATTSSM+SAPQGS  IDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKA+REIPD
Sbjct: 121 SRGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAKREIPD 180

Query: 181 IKPGYIVQLKV 189
           IKPGYIVQLKV
Sbjct: 181 IKPGYIVQLKV 191

[Close]

BLAST of Tan0017916 vs. ExPASy TrEMBL
Match: A0A6J1CB38 (50S ribosomal protein L19, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111009074 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.9e-78
Identity = 159/190 (83.68%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFN 60
           MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDA CSCSAPMSMEN FT+ R FG+PYGS N
Sbjct: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAGCSCSAPMSMENGFTIARPFGNPYGSLN 60

Query: 61  S--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFSS 120
               RSFSKL NQY EAF NMGSQ+EFV SRKHVSSTCS FQ PRP LFQLAE+A PFSS
Sbjct: 61  GSFLRSFSKLSNQYPEAFINMGSQVEFVSSRKHVSSTCSVFQRPRPLLFQLAEVAPPFSS 120

Query: 121 RGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDI 180
           RGIA TSS++S  Q SP I  DITPRIKFKRLDKTSKHIMQILDKEA+EEVKAQREIPDI
Sbjct: 121 RGIA-TSSVESVSQESPEITPDITPRIKFKRLDKTSKHIMQILDKEAIEEVKAQREIPDI 180

Query: 181 KPGYIVQLKV 189
           KPGYIVQLKV
Sbjct: 181 KPGYIVQLKV 189

[Close]

BLAST of Tan0017916 vs. ExPASy TrEMBL
Match: A0A6J1K1Y5 (50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 157/190 (82.63%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSFN 60
           MQ+F RINQLVRRQS  AHFK IRGYPLNGDA+  CSA MSMENS T  RLF +PYGS N
Sbjct: 1   MQNFPRINQLVRRQSSYAHFKPIRGYPLNGDASSCCSASMSMENSLTSLRLFANPYGSLN 60

Query: 61  S--YRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFSS 120
              +RSFSKLGNQY EAF++MGSQMEF+PS K VSS C AFQSPR +LFQLAEIAAPFSS
Sbjct: 61  GSLFRSFSKLGNQYPEAFKDMGSQMEFLPSGKRVSSACPAFQSPRKHLFQLAEIAAPFSS 120

Query: 121 RGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDI 180
           RGIATTSSM+SAPQGSPAID+DITPRIKFKRLDKTSKHIMQILDKEA+EEVKA+REIPDI
Sbjct: 121 RGIATTSSMESAPQGSPAIDSDITPRIKFKRLDKTSKHIMQILDKEAIEEVKAKREIPDI 180

Query: 181 KPGYIVQLKV 189
           KPGYIVQLKV
Sbjct: 181 KPGYIVQLKV 190

[Close]

BLAST of Tan0017916 vs. ExPASy TrEMBL
Match: A0A0A0LV41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 155/190 (81.58%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAACSCSAPMSMENSFTVPRLFGSPYGSF- 60
           MQ FRRINQLVRRQ PDA+FK IRGYPLNGDA CSCSAPMSMENSFT+P LFG  YGS  
Sbjct: 138 MQGFRRINQLVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENSFTIPYLFGKSYGSLC 197

Query: 61  -NSYRSFSKLGNQYSEAFRNMGSQMEFVPSRKHVSSTCSAFQSPRPYLFQLAEIAAPFSS 120
            +  RSFS+ GNQY EAF+NM SQMEFVP RKH SST SAFQS RP+ FQLAE AAPFSS
Sbjct: 198 GSFLRSFSRSGNQYPEAFKNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSS 257

Query: 121 RGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREIPDI 180
           RGIATTSSM+SA QGSPA+D+ I PRIKFKRLDKTS+HIMQILDKEAVEEVKA+REIPDI
Sbjct: 258 RGIATTSSMESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDI 317

Query: 181 KPGYIVQLKV 189
           KPGYIVQLKV
Sbjct: 318 KPGYIVQLKV 327

[Close]

BLAST of Tan0017916 vs. TAIR 10
Match: AT5G11750.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-20
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 116 FSSRGIATT-SSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQRE 175
           +S R  +TT  S++S PQGSP  D  +  RIKFKRLDKT+KHIMQI+DKEAVEEV+  RE
Sbjct: 77  YSLRCFSTTGDSVQSTPQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRNLRE 136

Query: 176 IPDIKPGYIVQLKV 189
           IP+IKPGYIVQLKV
Sbjct: 137 IPEIKPGYIVQLKV 150

[Close]

BLAST of Tan0017916 vs. TAIR 10
Match: AT1G24240.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 9.6e-19
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 116 FSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREI 175
           FSSR  +TT     + QGSP  D  +  RIKFKRLDKT+KHIMQI+DKEAVEEV+  REI
Sbjct: 74  FSSRCFSTTG---DSVQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRTLREI 133

Query: 176 PDIKPGYIVQLKV 189
           P+IKPGYIVQLKV
Sbjct: 134 PEIKPGYIVQLKV 143

[Close]

BLAST of Tan0017916 vs. TAIR 10
Match: AT4G11630.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-18
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 116 FSSRGIATTSSMKSAPQGSPAIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAQREI 175
           ++SR  +TT    S+ QGSP  D  +  RIKFKRLDKT+KHIMQI+DKEAVEEV++ REI
Sbjct: 76  YASRCFSTTGD--SSVQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRSLREI 135

Query: 176 PDIKPGYIVQLKV 189
           P+IKPGYIVQLKV
Sbjct: 136 PEIKPGYIVQLKV 146

The following BLAST results are available for this feature:

BLAST of Tan0017916 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017916 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573088.1	2.2e-81	85.79	50S ribosomal protein L19, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022955270.1	6.3e-81	85.26	54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita mos...	[more]
XP_022955269.1	1.6e-79	84.82	54S ribosomal protein subunit img1, mitochondrial-like isoform X1 [Cucurbita mos...	[more]
XP_023542739.1	4.5e-79	84.21	54S ribosomal protein subunit img1, mitochondrial-like isoform X2 [Cucurbita pep...	[more]
XP_022137703.1	3.8e-78	83.68	50S ribosomal protein L19, chloroplastic-like [Momordica charantia]	[more]

BLAST of Tan0017916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUP7	3.1e-81	85.26	54S ribosomal protein subunit img1, mitochondrial-like isoform X2 OS=Cucurbita m...	[more]
A0A6J1GVN3	7.5e-80	84.82	54S ribosomal protein subunit img1, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1CB38	1.9e-78	83.68	50S ribosomal protein L19, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1K1Y5	1.2e-77	82.63	50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A0A0LV41	1.3e-76	81.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=3 SV=1	[more]

BLAST of Tan0017916 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11750.1	8.6e-20	68.92	Ribosomal protein L19 family protein	[more]
AT1G24240.1	9.6e-19	68.49	Ribosomal protein L19 family protein	[more]
AT4G11630.1	1.2e-18	67.12	Ribosomal protein L19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 58..191
None	No IPR available	PANTHER	PTHR15680:SF9	39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL	coord: 58..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017916.3	Tan0017916.3	mRNA
Tan0017916.1	Tan0017916.1	mRNA
Tan0017916.2	Tan0017916.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome