Tan0017882 (gene) Snake gourd v1

Overview
NameTan0017882
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG01: 10277654 .. 10279263 (+)
RNA-Seq ExpressionTan0017882
SyntenyTan0017882
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATGGTGGTCAAGATAATTAAGACCTTCATTCTCATCTTCCTCATCTTCACTTCCCCTAATTCTGCAGGTACTTCTCTCTTCTGCCATTCTTATCAGTTCAGTGTTAGGGTTAATTAATTAGTAGACTGGCCAATGTTGTAATTAATTCCTTACTCTTATTATTAATTTTTTTTTGGTATTTATTAAGATTTAAACTATTTGTCAAATTACCATTAGAACCACAAACAAGTGAACTATAAATATTATGAGATGAATGGAAAATAACAGGGTCGATTGTTTTTAAGGAATTATGATGTTCGATATCTTCAAACGTTTGAAATTTTAGATGTACGATACTTTAGATTCCCAACATATTTAGATTACTATGTTTGTTTTGTAGGAAAATTTATAAGGATGTATGAGAATATTTAGATAACCATGTTTGTTTTGCAGGATTTGTGTATGAGAATGTTTTAAGATTATGTGTTATACCAATAATTTCCTTGCTAATTCTTACCTAATTTATTTATTAGTTTAATATAATTTAAATTTATATCACATGCAGGCTGGTTTTCATTAATCTAATATTATATTTGCATATATTTATTTTAAACTAATATTTACGTGTTATTTTGTAGAATAAATTAATTTATATTAGTTTGATATTTTATAAAATAATTTAATTATTAAATATTAATTCAATTTCAACTCAACTTTATTTTATATCTAAATGTAAAATATAAATATAGTAACTATATAGAATCGTTTATTAGCGCATAAATCATTAATTTATTTTTAAATAAAAAATAAAAATGTGAAATCAAGAAAATTAATAAAGGAAAAAAATATCATTAGAGTATATACTCAACATGGGAGTCTTAAAAATCAATAGTTCAAAAAGGCATCCAAATTAAAATGAATTAGTATGAGGATCTTGAAATGTCAAGACATCTTACACTCTAATCCAGACGAGCAAACGACCCCTAAAGAGATTTGTATTTTAAATGATGAATTTAGATGCTATATTAAATCAAGATTATTTTAAAGTAATTTTTTGGGGTATAAATTAAGAAGAATATAATCTCAATCTAAATGCAAATGGTTGATGTTCCATTGCAGGAGGAGCTCATGGCTTGAGCCGAAAAGAGGGTTGTTTGAAGGAAGAACCAAATCCTTGTGGTCAGGTAAGGCCATATATACAATTATACATACCCACATTAAAAAATAATAATAATAATGTAAAGTATTAGCTTTCGATAATTGAACGAGTTACCGAACAAGTAAAAAAATTTCACAAATTTATTTACACATAGCTAGTTCTCTATTTAAAAGTTGCACCGTGTTAGCGTTTTTATATATATTGTTTTATTTGTCTTGTGTGTTCGACTTGGAATCACCATTAATTATGGATATATATATAGTAGATTATATAATTTCTTCTTTTCTAAGAGTAATTTTAATAAATCGACTACTTTAATTTGCAGAGAATTGTGAAAGGAAAAATGATGAGAAAGGTTTTGGAAATGGAAGCAATATTGATGGACTATCATGAACCAAGAGCCAACCCAAGTCACGAGCCAAGAAAAGGAAGCCCTAGAGGTCGAGCAAGCTTCAATCCATGA

mRNA sequence

ATGGCTTCCATGGTGGTCAAGATAATTAAGACCTTCATTCTCATCTTCCTCATCTTCACTTCCCCTAATTCTGCAGGAGGAGCTCATGGCTTGAGCCGAAAAGAGGGTTGTTTGAAGGAAGAACCAAATCCTTGTGGTCAGAGAATTGTGAAAGGAAAAATGATGAGAAAGGTTTTGGAAATGGAAGCAATATTGATGGACTATCATGAACCAAGAGCCAACCCAAGTCACGAGCCAAGAAAAGGAAGCCCTAGAGGTCGAGCAAGCTTCAATCCATGA

Coding sequence (CDS)

ATGGCTTCCATGGTGGTCAAGATAATTAAGACCTTCATTCTCATCTTCCTCATCTTCACTTCCCCTAATTCTGCAGGAGGAGCTCATGGCTTGAGCCGAAAAGAGGGTTGTTTGAAGGAAGAACCAAATCCTTGTGGTCAGAGAATTGTGAAAGGAAAAATGATGAGAAAGGTTTTGGAAATGGAAGCAATATTGATGGACTATCATGAACCAAGAGCCAACCCAAGTCACGAGCCAAGAAAAGGAAGCCCTAGAGGTCGAGCAAGCTTCAATCCATGA

Protein sequence

MASMVVKIIKTFILIFLIFTSPNSAGGAHGLSRKEGCLKEEPNPCGQRIVKGKMMRKVLEMEAILMDYHEPRANPSHEPRKGSPRGRASFNP
Homology
BLAST of Tan0017882 vs. NCBI nr
Match: KAG6600410.1 (hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 59/92 (64.13%), Postives = 65/92 (70.65%), Query Frame = 0

Query: 1  MASMVVKIIKTFILIFLIFTSPNSAGGAHGLSRKEGCLKEEPNPCGQRIVKGKMMRKVLE 60
          MASM+       I  FLIFTSP S+G AHG S +   L E+PNP  QRIV    MRKVL 
Sbjct: 1  MASML-----PIIFTFLIFTSP-SSGRAHGPSLQPD-LNEKPNPYSQRIV----MRKVLG 60

Query: 61 MEAILMDYHEPRANPSHEPRKGSPRGRASFNP 93
          M+A LMDYHEP ANPSHEPR+GSP GRASFNP
Sbjct: 61 MDATLMDYHEPGANPSHEPRRGSPGGRASFNP 81

BLAST of Tan0017882 vs. NCBI nr
Match: KAG6600409.1 (hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 5.5e-11
Identity = 49/88 (55.68%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1  MASMVVKIIKTFILIFLIFTSPNSAGGAHGLSRKEGCLKEEPNPCGQRIVKGKMMRKVLE 60
          MASM     KTFI IFL+F  PNS G A GL  KEG   + PNPCGQ I++ K +RK+L 
Sbjct: 1  MASMAA--FKTFIFIFLVFICPNS-GDADGLRLKEGL--KLPNPCGQVIIEKKGVRKLLG 60

Query: 61 MEAILMDYHEPRANPSHEPRKGSPRGRA 89
           E  L+DY  P  NP HEPR G+P GRA
Sbjct: 61 AEE-LLDYASPSHNPRHEPRVGNPGGRA 82

BLAST of Tan0017882 vs. NCBI nr
Match: KAG6577122.1 (hypothetical protein SDJN03_24696, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 0

Query: 9  IKTFILIFLIFTSPNSAGGAHGLSRKEGCLKEEPNPCGQRIVKGKMMRKVLEMEAILMDY 68
          + TF+LIF++F +   +GGAHG                      ++ RK+L  EAILMDY
Sbjct: 6  LNTFLLIFVLFFASFISGGAHG--------------------NVQVTRKLLGNEAILMDY 65

Query: 69 HEPRANPSHEPRKGSPRGRASFNP 93
          +EP ANP HEPRKGSP GRASFNP
Sbjct: 66 NEPSANPRHEPRKGSPGGRASFNP 69

BLAST of Tan0017882 vs. NCBI nr
Match: KAA0044962.1 (hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK16508.1 hypothetical protein E5676_scaffold21G003170 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-09
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 31 LSRKEGCLKEEPNPCGQRIV--KGKMMRKVL-EMEAILMDYHEPRANPSHEPRKGSPRGR 88
          +S KEG  +E  NPCGQ  +  KGK+MRK+L   E ILMDY+EP ANPSHEPR+G+P GR
Sbjct: 1  MSLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

BLAST of Tan0017882 vs. NCBI nr
Match: KAG6577123.1 (hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 48/89 (53.93%), Postives = 54/89 (60.67%), Query Frame = 0

Query: 1  MASMVVKIIKTFILIFLIFTSPNSAGGAHGLSRKEGCLKEEPNPCGQ-RIVKGKMMRKVL 60
          MASM      TF  IFL+FT PNS G A GL+ KEG   + PNPCGQ R+ K K+ RK+L
Sbjct: 1  MASMAA--FNTFFFIFLLFTYPNS-GVADGLNLKEGL--KLPNPCGQVRVEKNKVARKLL 60

Query: 61 EMEAILMDYHEPRANPSHEPRKGSPRGRA 89
            E    DY  P  N  HEPR GSP GRA
Sbjct: 61 GAEE-FSDYASPEHNRRHEPRIGSPGGRA 83

BLAST of Tan0017882 vs. ExPASy TrEMBL
Match: A0A5A7TNM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003170 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 31 LSRKEGCLKEEPNPCGQRIV--KGKMMRKVL-EMEAILMDYHEPRANPSHEPRKGSPRGR 88
          +S KEG  +E  NPCGQ  +  KGK+MRK+L   E ILMDY+EP ANPSHEPR+G+P GR
Sbjct: 1  MSLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

BLAST of Tan0017882 vs. ExPASy TrEMBL
Match: A0A0A0KYH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 46/83 (55.42%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 9  IKTFILIFL-IFTSPNSAGGAHGLSRKEGCLKEEPNPCGQRIVK--GKMMRKVLEMEAIL 68
          IKTFI IFL IF  PNS G AH LS K+G   +  NPCGQ IV+   K+ RK+L  EA  
Sbjct: 5  IKTFIFIFLIIFMFPNS-GDAHDLSLKKGL--KLSNPCGQLIVEKNNKVTRKLLGAEA-F 64

Query: 69 MDYHEPRANPSHEPRKGSPRGRA 89
           DY  P  N  HEPR G+P GRA
Sbjct: 65 ADYASPDHNTRHEPRFGNPGGRA 83

BLAST of Tan0017882 vs. ExPASy TrEMBL
Match: A0A5D3D203 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003180 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 9  IKTFILIFL-IFTSPNSAGGAHGLSRKEGCLKEEPNPCGQRIVK--GKMMRKVLEMEAIL 68
          IKTFI IFL IFT P+S G A  LS K+G   +  NPCGQ IV+   ++ RK+L  E +L
Sbjct: 5  IKTFIFIFLIIFTFPDS-GDAGDLSLKKGL--KLSNPCGQMIVEKNNRVTRKLLGAE-VL 64

Query: 69 MDYHEPRANPSHEPRKGSPRGRA 89
          +DY  P  N  HEPR GSP GRA
Sbjct: 65 LDYASPDHNSRHEPRFGSPGGRA 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6600410.11.5e-1664.13hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6600409.15.5e-1155.68hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577122.11.0e-0948.81hypothetical protein SDJN03_24696, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044962.13.0e-0961.67hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK1650... [more]
KAG6577123.11.1e-0853.93hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5A7TNM71.4e-0961.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KYH72.3e-0755.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1[more]
A0A5D3D2033.9e-0754.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0017882.1Tan0017882.1mRNA