Tan0017849 (gene) Snake gourd v1

Overview
NameTan0017849
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG01: 36037456 .. 36038034 (+)
RNA-Seq ExpressionTan0017849
SyntenyTan0017849
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTCTTCTTCTTCCTTTTTCTTCTTCTTCTTCTTCTTCCTGATTCTGCCATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATCTCAAGCCTTCCCCCAAAACGGGGTCGTATCAAGGCTCAGATTTTTGAGAGCCTTGTCAATTCAGCCGCCTTGGCCGCCTTCATGGCCGAACAAATACTCTGCAGAGTCATTCAAGACCTCATCGGCGCAGCCAGAGCCGACGCCGTTCCCCCGCCTTCCCCGGCGGCGCCGCCACCTCCGCCTCCTGTTATTATTAGTCATGGAGGCTCCGTCGTCACGTGATACCCCACCTCCATACTACTTCGTTTTAATGGGTTGGAGATGGGATATTCTGCTGTGTTCTTCCTCATTTTTCTCAAGGGCTATAGATTTGTAATTTCATTTTTCCATGTCTTTCTTCTCGTGTGGTGTGGTTTTTATACCCGAGCTTCATATTCGAATGTCTAACTATTTAGTCGATTATATAATGTTGTTAACTAGTTGAACTATGATTAGATGGGTCGGTCAAGTCTGTCCTTAGTTTAAATTTTTCCATTTTAGGTGTGGTGA

mRNA sequence

CTCTTCTTCTTCTTCCTTTTTCTTCTTCTTCTTCTTCTTCCTGATTCTGCCATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATCTCAAGCCTTCCCCCAAAACGGGGTCGTATCAAGGCTCAGATTTTTGAGAGCCTTGTCAATTCAGCCGCCTTGGCCGCCTTCATGGCCGAACAAATACTCTGCAGAGTCATTCAAGACCTCATCGGCGCAGCCAGAGCCGACGCCGTTCCCCCGCCTTCCCCGGCGGCGCCGCCACCTCCGCCTCCTGTTATTATTAGTCATGGAGGCTCCGTCGTCACGTGATACCCCACCTCCATACTACTTCGTTTTAATGGGTTGGAGATGGGATATTCTGCTGTGTTCTTCCTCATTTTTCTCAAGGGCTATAGATTTGTAATTTCATTTTTCCATGTCTTTCTTCTCGTGTGGTGTGGTTTTTATACCCGAGCTTCATATTCGAATGTCTAACTATTTAGTCGATTATATAATGTTGTTAACTAGTTGAACTATGATTAGATGGGTCGGTCAAGTCTGTCCTTAGTTTAAATTTTTCCATTTTAGGTGTGGTGA

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATCTCAAGCCTTCCCCCAAAACGGGGTCGTATCAAGGCTCAGATTTTTGAGAGCCTTGTCAATTCAGCCGCCTTGGCCGCCTTCATGGCCGAACAAATACTCTGCAGAGTCATTCAAGACCTCATCGGCGCAGCCAGAGCCGACGCCGTTCCCCCGCCTTCCCCGGCGGCGCCGCCACCTCCGCCTCCTGTTATTATTAGTCATGGAGGCTCCGTCGTCACGTGA

Protein sequence

MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEQILCRVIQDLIGAARADAVPPPSPAAPPPPPPVIISHGGSVVT
Homology
BLAST of Tan0017849 vs. NCBI nr
Match: KAE8653222.1 (hypothetical protein Csa_019661, partial [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-20
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 4  ASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEQILCRVIQDLIGAARADAVP 63
          ASST  KGKIS+LPPKRGRIKAQIFESLVNSAALAAFMAE+ILCR+I+DL+  AR   VP
Sbjct: 1  ASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTVDVP 60

Query: 64 PPSPAAPPPPPPVIISHGGS 84
          PP+PA PPPP   +I HG S
Sbjct: 61 PPTPARPPPP---LIFHGSS 77

BLAST of Tan0017849 vs. NCBI nr
Match: KAG6583308.1 (hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-14
Identity = 56/86 (65.12%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEQILCRVIQDLIGAARAD 60
          MAAA STGLK  ISSLPP+RGRIKA+IFESLVNSAAL       IL +VI+ L+  A+  
Sbjct: 1  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGAQIR 60

Query: 61 AVPPPSPAAPPPPPPVIISHGGSVVT 87
          AV PPSP APPPPP  +   GGSVVT
Sbjct: 61 AVLPPSPMAPPPPP--LRYDGGSVVT 77

BLAST of Tan0017849 vs. NCBI nr
Match: KAG6583309.1 (hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 56/86 (65.12%), Postives = 62/86 (72.09%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEQILCRVIQDLIGAARAD 60
          MAAA STGLK  ISSLPP+RGRIKA+IFESLVNSAAL       IL +VI+ L+  AR  
Sbjct: 1  MAAARSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGARVH 60

Query: 61 AVPPPSPAAPPPPPPVIISHGGSVVT 87
          AVP PSP AP PPP  +   GGSVVT
Sbjct: 61 AVPLPSPVAPLPPP--LRYDGGSVVT 77

BLAST of Tan0017849 vs. NCBI nr
Match: KAG6583472.1 (hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEQILCRVIQDLIGAARAD 60
          MAAA S GLK  ISSLPP+RGRIKA+IFESLVNSAAL       IL +VI+ L+ +A+  
Sbjct: 1  MAAAPSMGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILLKVIRYLVSSAQIR 60

Query: 61 AVPPPSPAAPPPPPPVIISHGGSVVT 87
          AVP PSP APPPPP  +   GGSVVT
Sbjct: 61 AVPLPSPVAPPPPP--LRYDGGSVVT 77

BLAST of Tan0017849 vs. ExPASy TrEMBL
Match: A0A0A0LS06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 58/83 (69.88%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAEQILCRVIQDLIGAARAD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMAE+ILCR I+DL+ +AR  
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVPPPSPAAPPPPPPVIISHGGS 84
            PPP PA PPP    +I HG S
Sbjct: 61 DAPPPYPAPPPP----LIFHGVS 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8653222.11.2e-2075.00hypothetical protein Csa_019661, partial [Cucumis sativus][more]
KAG6583308.14.9e-1465.12hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583309.11.1e-1365.12hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583472.11.1e-1363.95hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0LS062.1e-1869.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0017849.1Tan0017849.1mRNA