Tan0017841 (gene) Snake gourd v1

Overview


Name	Tan0017841
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	pre-rRNA-processing protein TSR2 homolog
Location	LG01: 102960811 .. 102964230 (-)
RNA-Seq Expression	Tan0017841
Synteny	Tan0017841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAGCTTGTAGGAAAATTTTCTCCGTACTCCCTCTTCAATCCCCACCACATCGAGGTTCTCCTTGTCCTTGCAGGAAAAATGAGCATCCCTTATCGATAACTTAAATTTAAAATTTATTTCTTGCTAAAAAAAGCTTAAAACTTATTAGTTTCTAAAAAAAATTTAAAAATTATTATAATTGAACTTTTTCTCTCTCTCTCTCTCTGAAGTGAACTGGTTAGGGCTCAACAATCTCATGCAATTATCTTTTTGGTTCTTAAGCTCTCTGAATCGCAATCGCATCTCTCTCTCGATCGTCCCTCACCCGCAATTTCCTTCACCGTTTTCAGTTTCTTCAAGGTTCGTTCCTAATAATTTGTTTGTTTTAGGTTTTGCTTTGCTGATTTAATGTTTTCGTTAGATTTGATCTCTTTCTCCATCTCACTCAAGGTTCCAAGTGAGCAATTATGCAATGAAGAGCAATTATGCAACAAATCTCTCTCTTCCATCGTATTTTATGAAATTATCTCTTCAATTGTGAACTTGGTTTTTAGAGAGACTGAACTTCTGTACAACAGTTAAATTTTAGCAACTCGTTGTTGGCAATCGATTTTTTGGAATCCCCACTTGGTTGGCAATCTTCTTTTCGTTAAAATTTAAAAATTGGGGAGAAATTTTGTATTGGTTGTTTCCATGTTATGTGCTTTCGTAATTGATAATATATTCATACAAGAAGATTGCTCTTGTTAACTTACCTACTTTGATATTTGGGGTTTAGGGTTTTACGCTTGGAGGCAGAGAGATGGAAGGTGGCGGAAACCGCCTTCTCCCAGTTGATGCTTTTCCGTTGTTCCAGGAAGGTCTCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCGGTGGAGAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGCTCCGACATTTTCACATGGTTTACCCAGAACAAAGGTAATTTTGCTCCTTTCCACTTGGATAATTTGGTACCTATCTTCGTGCATTGTTCCTCAGTAAGTGTTCTGTAGTTTGATCAGTTCCTCAGGTTCAGTACTTTTTAATTTCGCAAACACTTAAATATTTCTTAGAAGCAGTTTCTATAAACATAAAAAAGGAATTCATTAAATGAAGAGATCAGTGTTTCAAAAAGATCAGAGGTGCGCCTAGGCTGGCCTAAGCCTTAAGCATGGCCTTTTGCCTTGCTTCAGAGAAACAAGGCTCCGTTAATGATGTGTGCCTGAGGCTCTGCTCCTCAAGCCTAGCTTTCTACTGTTTTTGTTTGTAATTTTTCTAACTTTGAAGGAAGAAACTCATGAATATTCTTTAAAAAAACATTCATTTTTACGTTTCAATCTTGAATAATAGCTCACTTAAACTTTTCATCATCTTATTATTCGTAATACTATGTTTCTTCGTATACTATATTTCTATTCTATAGATTGTACAATTGTATCCTTGAGTTCTAAACAGAAGTTTTTTTTGCGCCTTGCACTTGAACCTTAAAGGGCTATGACAGCTATTGTCCTTGAGCTTTAAAGAACACTGGGTGAGATTACTTGTATGATTTGTATTCAAATCACAACTTTTTGTCTTTGATATTCAATTTGGTCAATTAATGGTGTGAATTTCCTTCCAAGAAGAAATTCAGTTACTTTGAACTATTTTAAACTTTTCTAGATGATAGTTGATTCGTAGTGGAACTTGATGCCATGTAAGCATATGATGTTTTTGTAGTTTTCACATTAGAATACTTCATATTGTTATCTTGATCTGAGAAAGTTATAATTTTTATCTTACAGAGCCACTATACATCGATGATTTAGAAATGATTCTCGATGAAGCTATGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCGTTGAGGAGGTATGTCTTAAACCTCTCTTGATCCTTGTTAGTCTTTGAGCAAAACCCTTTTTCTCATAACTAAGGTTTCTTTTTGTTCCACATGATGAAATAGCATGCCGTTATTTAAGACTAGGTTCATACATATATGTGTGTGAACTGTTTAGTTGAAATTGATTCTCTTAGTCAAATAAATTTATTTTATATTTAGTTTAGTTGTTTACTAATGACTAACTACCGTTGATGGATGACCCGATCTGACTTCGGATGGTTCTCAATGTGACTTGTGTAAATGGAGTTTTGTCAGAGATATTATGAAAATTTTGCTTCCACCTCTTAGTCTCTTTGCATGATGCTTTTGGTTGGAAAATAGTTCGAGATACTATTGAACTTGTAGCTATTTATTGTCTATGGTTGTGACTTCAGGAGATAGATGCTTGGAAGATGATAGTGATTGTATGAATAAACTTCCTAGTGGAACCTTATGTAGTTCATTAGTTTTCAAATCTAATAACTTTTTACATCTACACTAAGAGTGAATTTCTTTTCTGTGTAGTCATTTTCAATTTTCCGTAGGAGGAAACTAAATAAGTACTTAAAAAGTTCATAATTTCTAATAGATTTGTCCAGTTACGTTTTGTACCAGCTCCACATTCACCATGTTGCTTTTTTCCTCTGTTATTAGAATACTTGGTTGAAGCAGAAGAATAAGATATCGAATGGAAATAAAATTGAGTATTTACTCTTATTGATGGATTTTTGTTATCTTGTACTGTGTTAAAAATCACCTCTGAGAAGTGACGTGTTACTATTGTGTAGCTCCTTCAAGAATTGAGTATTTTTGGTTGCTTGTGTTTTCTTCGTAATGATGCAGGTAGCTGAAAAATTGATTGTCATGCATGAGGAATGTCTGGATGGAAACTTTAGCTCTATCGAAAGATTAAGGCAAACCCCCCTTCCACGAGTTGCTCATTCTCATGTTAATCAGGTAACATGAACTTTTGTCTTAAACAATTTGTTCTTTCATAGTTCCACTTGAAAGTAAGAATGTATGTTGAGAAGGAACTCGTTATCCAACCGCTTATGGTTCATAATAGCATTTTTCAGAAAATTTGTCATTCATTGTACAAAGCAAACATTTGCTTGCTATATAAAGTATCTTCTAATCTTGACATTGATAAATTTGAAGGTTGTGAGTGATGAAGAAGATGAAGATGAAGATAATGGTGGTGATGTTGGAAATGGAAGAGGTGTCATGAGAAATGATATGATGGTGGATGCCATACAACAACCCAGGCCTGTAAACCAGCCCAATCCAGAGGCCACAGCTCAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGGGGTACAAGAAATTAGTTCCAAGCTTTCAATGTCTGGTATTTATCTACTTTTAATCATATCAAAATAATCCCTTTACCCTTTTTTTTATACCGGGCACCGGCCATCAATTTTGTTTGGTGTGAAAAAATATAAAGTAATAGAACTCAGTTTTGTTTGGAG

mRNA sequence

ATTAGCTTGTAGGAAAATTTTCTCCGTACTCCCTCTTCAATCCCCACCACATCGAGGTTCTCCTTGTCCTTGCAGGAAAAATGAGCATCCCTTATCGATAACTTAAATTTAAAATTTATTTCTTGCTAAAAAAAGCTTAAAACTTATTAGTTTCTAAAAAAAATTTAAAAATTATTATAATTGAACTTTTTCTCTCTCTCTCTCTCTGAAGTGAACTGGTTAGGGCTCAACAATCTCATGCAATTATCTTTTTGGTTCTTAAGCTCTCTGAATCGCAATCGCATCTCTCTCTCGATCGTCCCTCACCCGCAATTTCCTTCACCGTTTTCAGTTTCTTCAAGGGTTTTACGCTTGGAGGCAGAGAGATGGAAGGTGGCGGAAACCGCCTTCTCCCAGTTGATGCTTTTCCGTTGTTCCAGGAAGGTCTCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCGGTGGAGAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGCTCCGACATTTTCACATGGTTTACCCAGAACAAAGAGCCACTATACATCGATGATTTAGAAATGATTCTCGATGAAGCTATGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCGTTGAGGAGGTAGCTGAAAAATTGATTGTCATGCATGAGGAATGTCTGGATGGAAACTTTAGCTCTATCGAAAGATTAAGGCAAACCCCCCTTCCACGAGTTGCTCATTCTCATGTTAATCAGGTTGTGAGTGATGAAGAAGATGAAGATGAAGATAATGGTGGTGATGTTGGAAATGGAAGAGGTGTCATGAGAAATGATATGATGGTGGATGCCATACAACAACCCAGGCCTGTAAACCAGCCCAATCCAGAGGCCACAGCTCAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGGGGTACAAGAAATTAGTTCCAAGCTTTCAATGTCTGGTATTTATCTACTTTTAATCATATCAAAATAATCCCTTTACCCTTTTTTTTATACCGGGCACCGGCCATCAATTTTGTTTGGTGTGAAAAAATATAAAGTAATAGAACTCAGTTTTGTTTGGAG

Coding sequence (CDS)

ATGGAAGGTGGCGGAAACCGCCTTCTCCCAGTTGATGCTTTTCCGTTGTTCCAGGAAGGTCTCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAATTGGCGGTGGAGAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGCTCCGACATTTTCACATGGTTTACCCAGAACAAAGAGCCACTATACATCGATGATTTAGAAATGATTCTCGATGAAGCTATGCTTTCGTTGAATACTCAGGTTGATGATGGTAGCGTTGAGGAGGTAGCTGAAAAATTGATTGTCATGCATGAGGAATGTCTGGATGGAAACTTTAGCTCTATCGAAAGATTAAGGCAAACCCCCCTTCCACGAGTTGCTCATTCTCATGTTAATCAGGTTGTGAGTGATGAAGAAGATGAAGATGAAGATAATGGTGGTGATGTTGGAAATGGAAGAGGTGTCATGAGAAATGATATGATGGTGGATGCCATACAACAACCCAGGCCTGTAAACCAGCCCAATCCAGAGGCCACAGCTCAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGGGGTACAAGAAATTAG

Protein sequence

MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTPLPRVAHSHVNQVVSDEEDEDEDNGGDVGNGRGVMRNDMMVDAIQQPRPVNQPNPEATAQAEDGWVQVTSRRSRGTRN

Homology

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BLAST of Tan0017841 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-10
Identity = 50/182 (27.47%), Postives = 89/182 (48.90%), Query Frame = 0


Query: 16  LFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQNKEPLYIDDLEMIL 75
           +F E +  VL  W  LQ+AV+N +GG  S++K E +   +  +FT N + L  D++E  +
Sbjct: 11  VFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQPDEVEDFI 70

Query: 76  DEAMLS-LNTQVDDGSVEEVAEKLIVMHEECLDGNFSSI-ERLRQTPLPRVAHSHVN--- 135
            E M +  +T VDDGS+ +VA+++  M ++C  G  + + E++ +    + +        
Sbjct: 71  SELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSSGRAKATP 130

Query: 136 -QVVSDEEDEDEDNGGDVGNGRGVMRNDMMVDAIQQPRPVNQPNPEATAQAEDGWVQVTS 192
            Q   D++D+DE+   D   G           A      VN  + E   + +DGW  V  
Sbjct: 131 AQTPQDDDDDDEEEAMDCEGG--------SAGASVSSTAVNDLHHE--EEEDDGWTVVRR 181

[Close]

BLAST of Tan0017841 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.0e-10
Identity = 55/187 (29.41%), Postives = 92/187 (49.20%), Query Frame = 0


Query: 12  DAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQNKEPLYIDDL 71
           DA  LF+ G+   L  W ALQ+AVEN +GG  S+ K + L   +  +F +N + L +D++
Sbjct: 7   DARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEV 66

Query: 72  EMILDEAMLS-LNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTPLPRVAHSHVN 131
           E  L E + +  +T V+DGS+ +V+++L  M      G+ +++  +      R       
Sbjct: 67  EDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTAT 126

Query: 132 QV-VSDEEDEDEDNGGDVGNGRGVMRND-MMVDAI-QQPRPVNQPNPEATAQ---AEDGW 191
            +  + E DEDED+   V        ND    D +  QP P + P+ +   +    EDGW
Sbjct: 127 ALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEP-SDPDAQTIKEEDIVEDGW 186

[Close]

BLAST of Tan0017841 vs. ExPASy Swiss-Prot
Match: Q3KPN2 (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-10
Identity = 54/187 (28.88%), Postives = 91/187 (48.66%), Query Frame = 0


Query: 11  VDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQNKEPLYIDD 70
           VD+  LF+E    VL  W  LQ+AVEN +GG  S+ K E +   I  +F+ N +    + 
Sbjct: 6   VDSRGLFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEV 65

Query: 71  LEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIE-RLRQTPLPRV-AHSH 130
            + I+       +T V+DGS   VA++L V+  +C  G  ++++ ++ Q    +    + 
Sbjct: 66  EDSIMGMMNDEFDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDVRAK 125

Query: 131 VNQVV-SDEEDE---DEDNGGDVGNGRGVMRNDMMVDAIQQPRPVNQPNPEATAQAEDGW 190
           V +V  SD+E+E   DE+   D  N  G      +  A+    P + P  E   + +DGW
Sbjct: 126 VQEVTPSDDEEESSDDEEEAMDCENTPGSSSAASLSGAL---GPSSAPKKEEEPE-DDGW 185

Query: 191 VQVTSRR 192
             V  ++
Sbjct: 186 TVVRRKK 188

[Close]

BLAST of Tan0017841 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-09
Identity = 51/186 (27.42%), Postives = 91/186 (48.92%), Query Frame = 0


Query: 12  DAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQNKEPLYIDDL 71
           D+  LF   +   L  W ALQ+AVEN +GG  S+ K E L   +  +F +N + L +D++
Sbjct: 7   DSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEV 66

Query: 72  EMILDEAMLS-LNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTPLPRVAHSHVN 131
           E  L E M++  +T V+DGS+ +V+++L  M      G+ ++++ +      R       
Sbjct: 67  EDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRAT 126

Query: 132 QVVSDEEDEDEDNGGDVGNGRGVMRND-MMVDAI-QQPRPVNQPNPEATAQ---AEDGWV 191
            + +  E +++D+   V        ND    D +  QP P + P+ +   +    EDGW 
Sbjct: 127 ALPTAGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEP-SGPDSQTIKEEDIVEDGWT 186

[Close]

BLAST of Tan0017841 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-09
Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 0


Query: 17  FQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQNKEPLYIDDLEMILD 76
           F+ G+ +V+ +W AL +AVEN WGG DS  K + +   +   F +N++ +    +E  L 
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLF-KNEKVVDAALIEETLL 91

Query: 77  EAML-SLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERL--------RQTPLPRVAH- 136
            AM+    T V+D S   +A ++I ++ +C + N++ +E+L        R     RV H 
Sbjct: 92  YAMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVHI 151

Query: 137 ----SHVNQVVSDEEDEDEDNGGD 147
                  ++ V D +DEDED   D
Sbjct: 152 EGDDDEDDEDVEDYDDEDEDEEMD 174

[Close]

BLAST of Tan0017841 vs. NCBI nr
Match: XP_022975934.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 333.6 bits (854), Expect = 1.2e-87
Identity = 168/197 (85.28%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           MEGG NRLLP  A P FQEG+GLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKEPLYIDDLEMILDEA+LSLNTQVDDGS+EEVAE+LIVMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVAHSHVNQVVSDEEDEDEDNGGDVGNGRGVMRNDMMVDAIQQPRPVNQPNPEATAQA 180
           LP+VA SHV+QV+SD+E+EDE+ GGDV  G G  R DMMVDAI QPRPVNQP PEATA+A
Sbjct: 121 LPKVARSHVSQVMSDDEEEDEEEGGDVDVGNG--RRDMMVDAI-QPRPVNQPTPEATAEA 180

Query: 181 EDGWVQVTSRRSRGTRN 198
           EDGWVQVTSRRSRGTRN
Sbjct: 181 EDGWVQVTSRRSRGTRN 194

[Close]

BLAST of Tan0017841 vs. NCBI nr
Match: XP_022982103.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 330.9 bits (847), Expect = 7.6e-87
Identity = 172/204 (84.31%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           MEGGGNRLLP DAFPLFQEG+GLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKE LYIDDLEMILDE MLSLNTQVDDGS+EEVAEKLI MHEEC+DGNFSSI RLRQ+P
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 LPRVAHSHVNQVVSDEEDE----DEDNGGDVGNGRGVMRNDMMVDAI-QQPRPVN-QPNP 180
           LPR AHSHV+Q +SDEE+E    D+D+ GDVGNG   MRNDMMVDAI QQPR VN QP P
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRNDMMVDAIQQQPRAVNQQPRP 180

Query: 181 EATAQAEDGWVQVTSRR-SRGTRN 198
           EA+A AEDGWVQVTSRR SRGTRN
Sbjct: 181 EASAPAEDGWVQVTSRRSSRGTRN 204

[Close]

BLAST of Tan0017841 vs. NCBI nr
Match: XP_022936382.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86
Identity = 169/198 (85.35%), Postives = 181/198 (91.41%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           MEGG NRLLP  A PLFQEG+GLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKEPLYIDDLEMILDEA+LSLNTQVDDGS+EEVAE+LIVMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVAHSHVNQVVS-DEEDEDEDNGGDVGNGRGVMRNDMMVDAIQQPRPVNQPNPEATAQ 180
           LPRVA SHV+QV+S D+E+EDE+ GGDV  G G  R DMMVDAI QP PVNQP PEATA+
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNG--RRDMMVDAI-QPTPVNQPTPEATAE 180

Query: 181 AEDGWVQVTSRRSRGTRN 198
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 195

[Close]

BLAST of Tan0017841 vs. NCBI nr
Match: XP_023534881.1 (pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534882.1 pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucurbita pepo subsp. pepo] >XP_023534883.1 pre-rRNA-processing protein TSR2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.6 bits (841), Expect = 3.8e-86
Identity = 168/198 (84.85%), Postives = 181/198 (91.41%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           MEGG NRLLP  A PLFQEG+GLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKEPLYIDDLEMILDEA+LSLNTQVDDGS+EEVAE+LIVMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVAHSHVNQVVS-DEEDEDEDNGGDVGNGRGVMRNDMMVDAIQQPRPVNQPNPEATAQ 180
           LP+VA SHV+QV+S D+E+EDE+ GGDV  G G  R DMMVDA  QPRPVNQP PEATA+
Sbjct: 121 LPQVARSHVSQVMSDDDEEEDEEEGGDVVVGNG--RRDMMVDA-TQPRPVNQPTPEATAE 180

Query: 181 AEDGWVQVTSRRSRGTRN 198
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 195

[Close]

BLAST of Tan0017841 vs. NCBI nr
Match: XP_023524387.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.0 bits (837), Expect = 1.1e-85
Identity = 169/202 (83.66%), Postives = 180/202 (89.11%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           MEGGGNRLLP DAFPLFQEG+GLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKE LYIDDLEMILDE MLSLNTQVDDGS+EEVAEKLI MHEEC+DGNFSSIERLRQ+P
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 LPRVAHSHVNQVVSDEEDEDEDNGGDVGNGRGVMRNDMMVDAI----QQPRPVNQPNPEA 180
           L R AHSHV+Q +SD+E E+ED+  D GNG   MRNDMMVDAI    QQPR VNQP PEA
Sbjct: 121 LLRGAHSHVSQAMSDDE-EEEDDDDDGGNGSDGMRNDMMVDAIQQQQQQPRAVNQPRPEA 180

Query: 181 TAQAEDGWVQVTSRR-SRGTRN 198
           +A AEDGWVQVTSRR SRGTRN
Sbjct: 181 SAPAEDGWVQVTSRRSSRGTRN 201

[Close]

BLAST of Tan0017841 vs. ExPASy TrEMBL
Match: A0A6J1IM14 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111476490 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.7e-88
Identity = 168/197 (85.28%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           MEGG NRLLP  A P FQEG+GLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKEPLYIDDLEMILDEA+LSLNTQVDDGS+EEVAE+LIVMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVAHSHVNQVVSDEEDEDEDNGGDVGNGRGVMRNDMMVDAIQQPRPVNQPNPEATAQA 180
           LP+VA SHV+QV+SD+E+EDE+ GGDV  G G  R DMMVDAI QPRPVNQP PEATA+A
Sbjct: 121 LPKVARSHVSQVMSDDEEEDEEEGGDVDVGNG--RRDMMVDAI-QPRPVNQPTPEATAEA 180

Query: 181 EDGWVQVTSRRSRGTRN 198
           EDGWVQVTSRRSRGTRN
Sbjct: 181 EDGWVQVTSRRSRGTRN 194

[Close]

BLAST of Tan0017841 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.7e-87
Identity = 172/204 (84.31%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           MEGGGNRLLP DAFPLFQEG+GLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKE LYIDDLEMILDE MLSLNTQVDDGS+EEVAEKLI MHEEC+DGNFSSI RLRQ+P
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 LPRVAHSHVNQVVSDEEDE----DEDNGGDVGNGRGVMRNDMMVDAI-QQPRPVN-QPNP 180
           LPR AHSHV+Q +SDEE+E    D+D+ GDVGNG   MRNDMMVDAI QQPR VN QP P
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRNDMMVDAIQQQPRAVNQQPRP 180

Query: 181 EATAQAEDGWVQVTSRR-SRGTRN 198
           EA+A AEDGWVQVTSRR SRGTRN
Sbjct: 181 EASAPAEDGWVQVTSRRSSRGTRN 204

[Close]

BLAST of Tan0017841 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.3e-87
Identity = 169/198 (85.35%), Postives = 181/198 (91.41%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           MEGG NRLLP  A PLFQEG+GLVLSRWSALQLAVENEWGGRDSRRKVELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKEPLYIDDLEMILDEA+LSLNTQVDDGS+EEVAE+LIVMHEECLDGNFSSIE+LRQ+P
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 LPRVAHSHVNQVVS-DEEDEDEDNGGDVGNGRGVMRNDMMVDAIQQPRPVNQPNPEATAQ 180
           LPRVA SHV+QV+S D+E+EDE+ GGDV  G G  R DMMVDAI QP PVNQP PEATA+
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEEGGDVVVGNG--RRDMMVDAI-QPTPVNQPTPEATAE 180

Query: 181 AEDGWVQVTSRRSRGTRN 198
           AEDGWVQVTSRRSRGTRN
Sbjct: 181 AEDGWVQVTSRRSRGTRN 195

[Close]

BLAST of Tan0017841 vs. ExPASy TrEMBL
Match: A0A6J1FPH6 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446075 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.5e-85
Identity = 169/203 (83.25%), Postives = 181/203 (89.16%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           M+G GNRLLP DAFPLFQEG+GLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDIFTWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKE LYIDDLEMILDE MLSLNTQVDDGS+EEVAEKLI MHEEC+DGNFSSIERLRQ+P
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 LPRVAHSHVNQVVS-DEEDEDEDNGGDVGNGRGVMRNDMMVDAI---QQPRPVNQP-NPE 180
           LPR AHSHV+Q +S DEE+E+ED+  D GNG   MRNDMMVDAI   QQPR VNQP  PE
Sbjct: 121 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRNDMMVDAIQQQQQPRAVNQPRRPE 180

Query: 181 ATAQAEDGWVQVTSRR-SRGTRN 198
           A+A AEDGWVQVTSRR SRGTRN
Sbjct: 181 ASAPAEDGWVQVTSRRSSRGTRN 203

[Close]

BLAST of Tan0017841 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81
Identity = 160/200 (80.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MEGGGNRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60
           MEGGGNRLLP DAFPLFQEG+GLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QNKEPLYIDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTP 120
           QNKE LYIDDLE ILDEAMLSLNTQVDDGS+EEVAE+LI MHEEC+D NFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 LPRVAHSHVNQVVSDEEDEDEDNGGDVGNGRGVMRNDMMVDAIQ--QPRPVN-QPNPEAT 180
            P+VAH+HVNQ  SD++D+D+           V RNDMMVDA+Q  Q RPVN Q NPEAT
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVE-------EDVNRNDMMVDAVQPAQSRPVNHQLNPEAT 180

Query: 181 AQAEDGWVQVTSRRSRGTRN 198
           A+AEDGWVQVTSRR+RGTRN
Sbjct: 181 AEAEDGWVQVTSRRNRGTRN 193

[Close]

BLAST of Tan0017841 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 132.9 bits (333), Expect = 2.8e-31
Identity = 78/196 (39.80%), Postives = 116/196 (59.18%), Query Frame = 0


Query: 6   NRLLPVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQNKEP 65
           N  L V+A  + +EG+GL+L RW+A++ AVEN WGGRDS+ K     + +F +F Q+K+P
Sbjct: 4   NATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP 63

Query: 66  LY-IDDLEMILDEAMLSLNTQVDDGSVEEVAEKLIVMHEECLDGNFSSIERLRQTPLPRV 125
           +  I+ L  +LD+ +  LNT  +DGSV+EVA  L+ ++E+C +GN+  +E LR T     
Sbjct: 64  VKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQTS 123

Query: 126 AHSHVNQVVSDEEDEDEDNGGDVGNGRGVMRNDMMVDAI---QQPRPVNQPNPEATAQAE 185
           A         DEE +DED+             DMMVDA    Q+  PV++P       A+
Sbjct: 124 ASVVKVSNGDDEESDDEDDD---------QTTDMMVDASNQKQEAMPVDEP------VAD 183

Query: 186 DGWVQVTSRRSRGTRN 198
           DGW  V+SR+++G RN
Sbjct: 184 DGWTVVSSRKNKGKRN 184

[Close]

BLAST of Tan0017841 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-18
Identity = 43/100 (43.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 10  PVDAFPLFQEGLGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFTQNKEPLYID 69
           P+D   + Q  +G +LSRW  LQ+AV+N+WGG DS +K + L  ++F   +Q+   + ++
Sbjct: 24  PMDDDSVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQS-NVITVE 83

Query: 70  DLEMILDEA-MLSLNTQVDDGSVEEVAEKLIVMHEECLDG 109
           ++E +L E+ +LS NT+++DGS+EEVAE+L+++HEE L G
Sbjct: 84  EIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122

The following BLAST results are available for this feature:

BLAST of Tan0017841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KRG3	4.6e-10	27.47	Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=...	[more]
Q969E8	6.0e-10	29.41	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV...	[more]
Q3KPN2	7.9e-10	28.88	Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 ...	[more]
Q3T090	3.0e-09	27.42	Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1	[more]
Q06672	3.9e-09	30.56	Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]

BLAST of Tan0017841 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022975934.1	1.2e-87	85.28	pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]	[more]
XP_022982103.1	7.6e-87	84.31	pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]	[more]
XP_022936382.1	1.3e-86	85.35	pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata]	[more]
XP_023534881.1	3.8e-86	84.85	pre-rRNA-processing protein TSR2 homolog isoform X1 [Cucurbita pepo subsp. pepo]...	[more]
XP_023524387.1	1.1e-85	83.66	pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0017841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IM14	5.7e-88	85.28	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1J400	3.7e-87	84.31	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1F8A7	6.3e-87	85.35	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1FPH6	3.5e-85	83.25	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3E598	1.0e-81	80.00	Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Tan0017841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27990.1	2.8e-31	39.80	Pre-rRNA-processing protein TSR2, conserved region	[more]
AT3G22510.1	1.2e-18	43.00	Pre-rRNA-processing protein TSR2, conserved region	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 17..96 e-value: 5.2E-22 score: 78.2
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 10..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017841.1	Tan0017841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005634	nucleus