Tan0017693 (gene) Snake gourd v1

Overview


Name	Tan0017693
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG01: 109927391 .. 109928316 (-)
RNA-Seq Expression	Tan0017693
Synteny	Tan0017693

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTCTGCTAGCTCCAGCACTCTTCTCAGACCAAACCCATTTCTGGGTCAAAGTAGTAGAGGATCAAACTCCAATGCCATTAGAGATGTTGTCCCAATGGGGACTGGAAAATACGCCATGGTTCTCTCTCTGTTTCTCTCTGTTTTTGTGTGTGTGAGTTCTGGCTAAGTCAAAAAATATCCAACGACGTGTCGACATTTTCATTCACTTAAAAGCTCGATATTTCCGTCTTCGACATTCGACCCCAGGTGATGTTTGGGTAATGTAGTTGTTCTCTCTGTTGCAGAGCAATGAATTATGGTATGGACCAGATAGAGTCAAGTATTTGGGGCCATTTTCAGCTTAGACAGGGGAATTTCCAGGTGATTATATGGATGGGACACTGCCGGATTCTATGCCGATCCAGAGGCATTTGCCAACAACAGAGCTCTTGAGGTATTTCCTAATTTACATTCGAACTACCACCAGCACTCAAAAAAGGCCCACATTTCTCTTATTGGCATTTTCACAAACACCATGAATGCACTCATCAGCAAAACCCTCCAACACAAACTCCACAGCAACAAATCACCAAAAAACAGACAGCAAATATACACAACAGACTCACAAAACTCTAATTAATTCAAGTTTTCAAGTGGTTCTGATGGGTCCGAATGAATGGCCTGCAAGGAGTTGGAGAAGGGAACGAGGTGTACCCAGGAGGGCAATATTTCGACCCACTTGGGCTGGCGGATGATCCTGTAACATTTGCAGAGCTGAAGTTGAAAGAGAAAAAAATGGGCGTCTGGCAATGTTTCCCATGTTTGGATCATCTTGATAACCCAGTTGCTAACAATGCATGGTTTATGCCACAAAGTTTGCCCCTGCATCTTGAAAATAGAAATTGGTTTTGGATGGATGAGATATTTTTATTTTGTTAA

mRNA sequence

ATGGCGGCCTCTGCTAGCTCCAGCACTCTTCTCAGACCAAACCCATTTCTGGGTCAAAGTAGTAGAGGATCAAACTCCAATGCCATTAGAGATGTTGTCCCAATGGGGACTGGAAAATACGCCATGAGCAATGAATTATGGTATGGACCAGATAGAGTCAAGTATTTGGGGCCATTTTCAGTGTACCCAGGAGGGCAATATTTCGACCCACTTGGGCTGGCGGATGATCCTGTAACATTTGCAGAGCTGAAGTTGAAAGAGAAAAAAATGGGCGTCTGGCAATGTTTCCCATGTTTGGATCATCTTGATAACCCAGTTGCTAACAATGCATGGTTTATGCCACAAAGTTTGCCCCTGCATCTTGAAAATAGAAATTGGTTTTGGATGGATGAGATATTTTTATTTTGTTAA

Coding sequence (CDS)

ATGGCGGCCTCTGCTAGCTCCAGCACTCTTCTCAGACCAAACCCATTTCTGGGTCAAAGTAGTAGAGGATCAAACTCCAATGCCATTAGAGATGTTGTCCCAATGGGGACTGGAAAATACGCCATGAGCAATGAATTATGGTATGGACCAGATAGAGTCAAGTATTTGGGGCCATTTTCAGTGTACCCAGGAGGGCAATATTTCGACCCACTTGGGCTGGCGGATGATCCTGTAACATTTGCAGAGCTGAAGTTGAAAGAGAAAAAAATGGGCGTCTGGCAATGTTTCCCATGTTTGGATCATCTTGATAACCCAGTTGCTAACAATGCATGGTTTATGCCACAAAGTTTGCCCCTGCATCTTGAAAATAGAAATTGGTTTTGGATGGATGAGATATTTTTATTTTGTTAA

Protein sequence

MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFSVYPGGQYFDPLGLADDPVTFAELKLKEKKMGVWQCFPCLDHLDNPVANNAWFMPQSLPLHLENRNWFWMDEIFLFC

Homology

[Close]

BLAST of Tan0017693 vs. ExPASy Swiss-Prot
Match: P27489 (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB13 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-21
Identity = 78/255 (30.59%), Postives = 92/255 (36.08%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASS+T+++  PFLGQ+    N+N +RDVV MG+ ++ MSN+LWYGPDRVKYLGPFS
Sbjct: 4   MAATASSTTVVKATPFLGQT---KNANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFS 63

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 64  AQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWV 123

[Close]

BLAST of Tan0017693 vs. ExPASy Swiss-Prot
Match: Q9S7M0 (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB3 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.8e-20
Identity = 77/250 (30.80%), Postives = 87/250 (34.80%), Query Frame = 0


Query: 6   SSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFSV---- 65
           SSS++L P  FLGQ ++ S+ N +RDVV +G+ KY M N+LWYGPDRVKYLGPFSV    
Sbjct: 7   SSSSVLTPTTFLGQ-TKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPS 66

Query: 66  ------------------------------------------------------------ 112
                                                                       
Sbjct: 67  YLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFK 126

[Close]

BLAST of Tan0017693 vs. ExPASy Swiss-Prot
Match: P27523 (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHBC PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.6e-15
Identity = 65/252 (25.79%), Postives = 80/252 (31.75%), Query Frame = 0


Query: 4   SASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS--- 63
           +A+S  ++   PFL    R ++++ +RD+     G+  M N+LWYGPDRVKYLGPFS   
Sbjct: 7   AAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQT 66

Query: 64  ------------------------------------------------------------ 112
                                                                       
Sbjct: 67  PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVE 126

[Close]

BLAST of Tan0017693 vs. ExPASy Swiss-Prot
Match: P20866 (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_124625 PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-09
Identity = 35/69 (50.72%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 61  VYPGGQYFDPLGLADDPVTFAELKLKEKKMGVWQCFPCL------------------DHL 112
           +YPGG  FDPLGLADDP TFAELK+KE K G    F                     DHL
Sbjct: 190 IYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHL 249

[Close]

BLAST of Tan0017693 vs. ExPASy Swiss-Prot
Match: A2XJ35 (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-09
Identity = 35/69 (50.72%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 61  VYPGGQYFDPLGLADDPVTFAELKLKEKKMGVWQCFP------------------CLDHL 112
           VYPGG  FDPLGLADDP TFAELK+KE K G    F                     DH+
Sbjct: 186 VYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHV 245

[Close]

BLAST of Tan0017693 vs. NCBI nr
Match: CAN83151.1 (hypothetical protein VITISV_031291 [Vitis vinifera])

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-28
Identity = 91/233 (39.06%), Postives = 98/233 (42.06%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSST+LRP PFLGQ +RG+NSN +RDVVPMGTGKY M NELWYGPDRVKYLGPFS
Sbjct: 3   MAATASSSTVLRPTPFLGQ-TRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFS 62

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 63  AQTPFAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGL 122

[Close]

BLAST of Tan0017693 vs. NCBI nr
Match: PON96530.1 (Chlorophyll A-B binding protein [Trema orientale])

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-26
Identity = 93/255 (36.47%), Postives = 98/255 (38.43%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSSTLLRP PFLGQ SRG +SNA+RDVVPMGTGKY M NELWYGPDRVKYLGPFS
Sbjct: 3   MAATASSSTLLRPTPFLGQ-SRGPSSNALRDVVPMGTGKYTMGNELWYGPDRVKYLGPFS 62

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 63  AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 122

[Close]

BLAST of Tan0017693 vs. NCBI nr
Match: PON44570.1 (Chlorophyll A-B binding protein [Parasponia andersonii])

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-26
Identity = 93/255 (36.47%), Postives = 97/255 (38.04%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSSTLLRP PFLGQ SRG +SNA RDVVPMGTGKY M NELWYGPDRVKYLGPFS
Sbjct: 1   MAATASSSTLLRPTPFLGQ-SRGPSSNAFRDVVPMGTGKYTMGNELWYGPDRVKYLGPFS 60

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 61  AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 120

[Close]

BLAST of Tan0017693 vs. NCBI nr
Match: XP_002284493.1 (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera] >RVW36472.1 Chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 91/255 (35.69%), Postives = 98/255 (38.43%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSST+LRP PFLGQ +RG+NSN +RDVVPMGTGKY M NELWYGPDRVKYLGPFS
Sbjct: 3   MAATASSSTVLRPTPFLGQ-TRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFS 62

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 63  AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 122

[Close]

BLAST of Tan0017693 vs. NCBI nr
Match: RVW46346.1 (Chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 86/228 (37.72%), Postives = 95/228 (41.67%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSST LRP  F+GQ +RGSN+N +R+VVPMGTGK+ M NELWYGPDRVKYLGPFS
Sbjct: 6   MAATASSSTGLRPTQFVGQ-TRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGPFS 65

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 66  AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWV 125

[Close]

BLAST of Tan0017693 vs. ExPASy TrEMBL
Match: A5BEB1 (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera OX=29760 GN=VITISV_031291 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 91/233 (39.06%), Postives = 98/233 (42.06%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSST+LRP PFLGQ +RG+NSN +RDVVPMGTGKY M NELWYGPDRVKYLGPFS
Sbjct: 3   MAATASSSTVLRPTPFLGQ-TRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFS 62

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 63  AQTPFAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGL 122

[Close]

BLAST of Tan0017693 vs. ExPASy TrEMBL
Match: A0A2P5FFF8 (Chlorophyll a-b binding protein, chloroplastic OS=Trema orientale OX=63057 GN=TorRG33x02_078030 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 93/255 (36.47%), Postives = 98/255 (38.43%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSSTLLRP PFLGQ SRG +SNA+RDVVPMGTGKY M NELWYGPDRVKYLGPFS
Sbjct: 3   MAATASSSTLLRPTPFLGQ-SRGPSSNALRDVVPMGTGKYTMGNELWYGPDRVKYLGPFS 62

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 63  AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 122

[Close]

BLAST of Tan0017693 vs. ExPASy TrEMBL
Match: A0A2P5B6Y8 (Chlorophyll a-b binding protein, chloroplastic OS=Parasponia andersonii OX=3476 GN=PanWU01x14_265550 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 93/255 (36.47%), Postives = 97/255 (38.04%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSSTLLRP PFLGQ SRG +SNA RDVVPMGTGKY M NELWYGPDRVKYLGPFS
Sbjct: 1   MAATASSSTLLRPTPFLGQ-SRGPSSNAFRDVVPMGTGKYTMGNELWYGPDRVKYLGPFS 60

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 61  AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 120

[Close]

BLAST of Tan0017693 vs. ExPASy TrEMBL
Match: F6H2E4 (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera OX=29760 GN=VIT_19s0014g03660 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.6e-26
Identity = 91/255 (35.69%), Postives = 98/255 (38.43%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSST+LRP PFLGQ +RG+NSN +RDVVPMGTGKY M NELWYGPDRVKYLGPFS
Sbjct: 3   MAATASSSTVLRPTPFLGQ-TRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFS 62

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 63  AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 122

[Close]

BLAST of Tan0017693 vs. ExPASy TrEMBL
Match: A0A438DLZ0 (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera OX=29760 GN=CAB13_0 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.6e-26
Identity = 91/255 (35.69%), Postives = 98/255 (38.43%), Query Frame = 0


Query: 1   MAASASSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFS 60
           MAA+ASSST+LRP PFLGQ +RG+NSN +RDVVPMGTGKY M NELWYGPDRVKYLGPFS
Sbjct: 3   MAATASSSTVLRPTPFLGQ-TRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFS 62

Query: 61  ------------------------------------------------------------ 112
                                                                       
Sbjct: 63  AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 122

[Close]

BLAST of Tan0017693 vs. TAIR 10
Match: AT5G54270.1 (light-harvesting chlorophyll B-binding protein 3 )

HSP 1 Score: 98.6 bits (244), Expect = 4.1e-21
Identity = 77/250 (30.80%), Postives = 87/250 (34.80%), Query Frame = 0


Query: 6   SSSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAMSNELWYGPDRVKYLGPFSV---- 65
           SSS++L P  FLGQ ++ S+ N +RDVV +G+ KY M N+LWYGPDRVKYLGPFSV    
Sbjct: 7   SSSSVLTPTTFLGQ-TKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPS 66

Query: 66  ------------------------------------------------------------ 112
                                                                       
Sbjct: 67  YLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFK 126

[Close]

BLAST of Tan0017693 vs. TAIR 10
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2 )

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-09
Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 7  SSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAM-------SNELWYGPDRVKYLGPF 66
          +++ ++ + F GQ++   +S+ I+ V  +G G+  M          +WYGPDR KYLGPF
Sbjct: 2  ATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67 S---------VYPGGQYFDPLGLADDPVTFAE 83
          S          YPG   +D  GL+ DP TFA+
Sbjct: 62 SENTPSYLTGEYPGDYGWDTAGLSADPETFAK 93

[Close]

BLAST of Tan0017693 vs. TAIR 10
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1 )

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-08
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 7  SSTLLRPNPFLGQSSRGSNSNAIRDVVPMGTGKYAM-------SNELWYGPDRVKYLGPF 66
          +++ ++ + F GQ++   ++  +R V   G G+  M          +WYGPDR KYLGPF
Sbjct: 2  ATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67 S---------VYPGGQYFDPLGLADDPVTFAE 83
          S          YPG   +D  GL+ DP TFA+
Sbjct: 62 SENTPSYLTGEYPGDYGWDTAGLSADPETFAK 93

[Close]

BLAST of Tan0017693 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 32/69 (46.38%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 61  VYPGGQYFDPLGLADDPVTFAELKLKEKKMGVWQCFPCL------------------DHL 112
           +YPGG  FDPLGLA DP  FAELK+KE K G    F                     DHL
Sbjct: 190 LYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 249

[Close]

BLAST of Tan0017693 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 32/69 (46.38%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 61  VYPGGQYFDPLGLADDPVTFAELKLKEKKMGVWQCFPCL------------------DHL 112
           +YPGG  FDPLGLA DP  FAELK+KE K G    F                     DHL
Sbjct: 190 LYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 249

The following BLAST results are available for this feature:

BLAST of Tan0017693 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27489	2.3e-21	30.59	Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
Q9S7M0	5.8e-20	30.80	Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P27523	9.6e-15	25.79	Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulg...	[more]
P20866	3.5e-09	50.72	Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrium patens OX=3218 G...	[more]
A2XJ35	6.0e-09	50.72	Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica OX=...	[more]

BLAST of Tan0017693 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN83151.1	3.3e-28	39.06	hypothetical protein VITISV_031291 [Vitis vinifera]	[more]
PON96530.1	4.0e-26	36.47	Chlorophyll A-B binding protein [Trema orientale]	[more]
PON44570.1	6.8e-26	36.47	Chlorophyll A-B binding protein [Parasponia andersonii]	[more]
XP_002284493.1	1.2e-25	35.69	PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera] >R...	[more]
RVW46346.1	2.6e-25	37.72	Chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera]	[more]

BLAST of Tan0017693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5BEB1	1.6e-28	39.06	Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera OX=29760 GN=VIT...	[more]
A0A2P5FFF8	1.9e-26	36.47	Chlorophyll a-b binding protein, chloroplastic OS=Trema orientale OX=63057 GN=To...	[more]
A0A2P5B6Y8	3.3e-26	36.47	Chlorophyll a-b binding protein, chloroplastic OS=Parasponia andersonii OX=3476 ...	[more]
F6H2E4	5.6e-26	35.69	Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera OX=29760 GN=VIT...	[more]
A0A438DLZ0	5.6e-26	35.69	Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera OX=29760 GN=CAB...	[more]

BLAST of Tan0017693 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54270.1	4.1e-21	30.80	light-harvesting chlorophyll B-binding protein 3	[more]
AT2G05070.1	6.2e-09	35.87	photosystem II light harvesting complex gene 2.2	[more]
AT2G05100.1	2.3e-08	34.78	photosystem II light harvesting complex gene 2.1	[more]
AT1G29910.1	3.1e-08	46.38	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	3.1e-08	46.38	chlorophyll A/B-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..91 e-value: 1.3E-4 score: 22.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 27..113 e-value: 3.0E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR21649:SF129	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 61..94 coord: 2..61
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 45..113
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 61..94 coord: 2..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017693.1	Tan0017693.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0005622	intracellular anatomical structure
cellular_component	GO:0016020	membrane