Tan0017650 (gene) Snake gourd v1

Overview


Name	Tan0017650
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG07: 9527684 .. 9528336 (+)
RNA-Seq Expression	Tan0017650
Synteny	Tan0017650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCGCATTATAGACTCTTCTTCCGCCCCCAATTCATCAATCTCTCTCTCTCTCTGTTTCTTCCACTCAGCTTTCTGCAGAAACTTTGGTCGTTTTTCTACGCTCCACTCAATGCTGCACTGTTCTCACTGCCTCATTCACTGCGAAGCCGATCGCCTCGATGACTTCGTGTGAGAATCTGTCCCGATCATCTTCGCCTGTTTATGTGCAGATTCTCTTCGTTATTGTTCGCATTGAATTTCGTTGTTTATCCTAATTTATCGTTCCGATTGCTATTCCGTTTATTCTAATTATTTGATCGAGTAATCGGACCTTTTTTCGGATGCTGTTCGTTCGTTTTTTTATTTGAAATCGGTTCTTGTTTCTTATGGTTTTGGCGTCGATTTGCAGATGTTGTTCGGGCTGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATACTCGAAAAGGCCACCAAATTGAAGAAGAAGAAGAAGAAGGTGGACGAGAAGAAGCAGAAACATGAGAAGATTGGAATGGATTCTGTGAATTTGCAAGTCGCAACATGATTTTTTCCTCGGCAGTTTTGACTGATAACGGACTTAAAACTCAACAATTATTTGAATTATTACCTAATTCTTTGAAAGAAA

mRNA sequence

GTTGCGCATTATAGACTCTTCTTCCGCCCCCAATTCATCAATCTCTCTCTCTCTCTGTTTCTTCCACTCAGCTTTCTGCAGAAACTTTGGTCGTTTTTCTACGCTCCACTCAATGCTGCACTGTTCTCACTGCCTCATTCACTGCGAAGCCGATCGCCTCGATGACTTCGTATGTTGTTCGGGCTGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATACTCGAAAAGGCCACCAAATTGAAGAAGAAGAAGAAGAAGGTGGACGAGAAGAAGCAGAAACATGAGAAGATTGGAATGGATTCTGTGAATTTGCAAGTCGCAACATGATTTTTTCCTCGGCAGTTTTGACTGATAACGGACTTAAAACTCAACAATTATTTGAATTATTACCTAATTCTTTGAAAGAAA

Coding sequence (CDS)

ATGCTGCACTGTTCTCACTGCCTCATTCACTGCGAAGCCGATCGCCTCGATGACTTCGTATGTTGTTCGGGCTGCGGCAAGGTGCTTGGCCAGTTCTTTGGAGGAAAATACATTGATCATAGCAAACCTATACTCGAAAAGGCCACCAAATTGAAGAAGAAGAAGAAGAAGGTGGACGAGAAGAAGCAGAAACATGAGAAGATTGGAATGGATTCTGTGAATTTGCAAGTCGCAACATGA

Protein sequence

MLHCSHCLIHCEADRLDDFVCCSGCGKVLGQFFGGKYIDHSKPILEKATKLKKKKKKVDEKKQKHEKIGMDSVNLQVAT

Homology

[Close]

BLAST of Tan0017650 vs. NCBI nr
Match: KAG6605847.1 (hypothetical protein SDJN03_03164, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035795.1 hypothetical protein SDJN02_02594 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 2.5e-28
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MLHCSHCLIHCEADRLDDFVCCSGCGKVLGQFFGGKYIDHSKPILEKATKLKKKKKKVDE 60
          MLHCSHCLIHCEADR DDFVCCSGCGKVLGQFFGGKYIDHSKP+L K TKLKK+K    E
Sbjct: 1  MLHCSHCLIHCEADRFDDFVCCSGCGKVLGQFFGGKYIDHSKPMLGKDTKLKKRK---TE 60

Query: 61 KKQKHEKIGMDSVNLQVAT 80
          KKQKHEKI MDS +LQ+AT
Sbjct: 61 KKQKHEKIEMDSADLQLAT 76

[Close]

BLAST of Tan0017650 vs. NCBI nr
Match: KGN54032.1 (hypothetical protein Csa_021665 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 2.6e-22
Identity = 58/74 (78.38%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1  MLHCSHCLIHCEADRLDDFVCCSGCGKVLGQFFGGKYIDHSKPILEKATKLKKKKKKVDE 60
          MLHCSHCL H E DR DDFVCCSGCGKVLGQFFGGKYIDHSKPIL  ATKLKK+KK   E
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKK---E 60

Query: 61 KKQKHEKIGMDSVN 75
          KKQ+ EKI MD+ +
Sbjct: 61 KKQQLEKIRMDTTD 71

[Close]

BLAST of Tan0017650 vs. ExPASy TrEMBL
Match: A0A0A0L0C4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 58/74 (78.38%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1  MLHCSHCLIHCEADRLDDFVCCSGCGKVLGQFFGGKYIDHSKPILEKATKLKKKKKKVDE 60
          MLHCSHCL H E DR DDFVCCSGCGKVLGQFFGGKYIDHSKPIL  ATKLKK+KK   E
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKK---E 60

Query: 61 KKQKHEKIGMDSVN 75
          KKQ+ EKI MD+ +
Sbjct: 61 KKQQLEKIRMDTTD 71

The following BLAST results are available for this feature:

BLAST of Tan0017650 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605847.1	2.5e-28	83.54	hypothetical protein SDJN03_03164, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN54032.1	2.6e-22	78.38	hypothetical protein Csa_021665 [Cucumis sativus]	[more]

BLAST of Tan0017650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0C4	1.3e-22	78.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1	[more]

BLAST of Tan0017650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017650.1	Tan0017650.1	mRNA