Tan0017644 (gene) Snake gourd v1

Overview
NameTan0017644
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
LocationLG01: 90674740 .. 90675108 (-)
RNA-Seq ExpressionTan0017644
SyntenyTan0017644
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATAGGAGCGGTTGTGAGAGATCACAGAGGGAGACTGATGGTTGCGAAAGTGGAGATTATCCAAGGGCGAACGAATGTCTTAGCTGCTGAAGCTCTAGCGATGTTGGAGGGAATGCAGATGGAAGGCGATTTAGGCTATCGAAATCTATGGGTCGAATCTGATGCCAAGTGTCTGGTTCAAGCCATCCATGAACATGCATTACAATCTGGTCCTCAAGGCCTAATTTTGGAGGAAATTCGTCAATGCATGATAGGCAACCGTTTTATTGGGCTCAGTTTCAACCCACGTTCTACTAATAAGGTAACCCATAACCTGGCTAGATGGTCCATTTCCTCTAAAGAGTATTGTGTTTTGGGTTCATGA

mRNA sequence

ATGGGAATAGGAGCGGTTGTGAGAGATCACAGAGGGAGACTGATGGTTGCGAAAGTGGAGATTATCCAAGGGCGAACGAATGTCTTAGCTGCTGAAGCTCTAGCGATGTTGGAGGGAATGCAGATGGAAGGCGATTTAGGCTATCGAAATCTATGGGTCGAATCTGATGCCAAGTGTCTGGTTCAAGCCATCCATGAACATGCATTACAATCTGGTCCTCAAGGCCTAATTTTGGAGGAAATTCGTCAATGCATGATAGGCAACCGTTTTATTGGGCTCAGTTTCAACCCACGTTCTACTAATAAGGTAACCCATAACCTGGCTAGATGGTCCATTTCCTCTAAAGAGTATTGTGTTTTGGGTTCATGA

Coding sequence (CDS)

ATGGGAATAGGAGCGGTTGTGAGAGATCACAGAGGGAGACTGATGGTTGCGAAAGTGGAGATTATCCAAGGGCGAACGAATGTCTTAGCTGCTGAAGCTCTAGCGATGTTGGAGGGAATGCAGATGGAAGGCGATTTAGGCTATCGAAATCTATGGGTCGAATCTGATGCCAAGTGTCTGGTTCAAGCCATCCATGAACATGCATTACAATCTGGTCCTCAAGGCCTAATTTTGGAGGAAATTCGTCAATGCATGATAGGCAACCGTTTTATTGGGCTCAGTTTCAACCCACGTTCTACTAATAAGGTAACCCATAACCTGGCTAGATGGTCCATTTCCTCTAAAGAGTATTGTGTTTTGGGTTCATGA

Protein sequence

MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLVQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARWSISSKEYCVLGS
Homology
BLAST of Tan0017644 vs. NCBI nr
Match: XP_038722039.1 (uncharacterized protein LOC120014190 [Tripterygium wilfordii])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 1   MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCL 60
           +GIG V+RDH+G + ++ VE+I G+   + AEA  +L GMQ+ G+ G+R+  VESD+   
Sbjct: 529 IGIGGVLRDHKGEVFMSFVEVIYGKFGPIIAEAFTVLRGMQLSGEAGFRDFVVESDSSIF 588

Query: 61  VQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLAR 110
           + AI   + Q    G +++ +R        +   F  R  N V H LAR
Sbjct: 589 ITAISSDSHQLSVYGHLVDAVRDVPRSMGCVYFQFANRLCNSVAHTLAR 637

BLAST of Tan0017644 vs. NCBI nr
Match: XP_038704726.1 (uncharacterized protein LOC120000672 [Tripterygium wilfordii])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 0

Query: 1   MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCL 60
           +G+GAV+RDH G++  A  E + G       +A A+++G Q+   +G  NL +ESD+  L
Sbjct: 136 IGVGAVIRDHNGQVCAALSECMAGAFGPQVVKAYALMKGTQLAIHMGVSNLIIESDSHVL 195

Query: 61  VQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARWSIS 114
           V AI   A +  P G IL++IR  +     + L +  R  N+V H LAR SI+
Sbjct: 196 VNAIRSEAYELAPFGHILDDIRSLISCIGSVSLRYTRRLCNRVAHKLARNSIN 248

BLAST of Tan0017644 vs. NCBI nr
Match: XP_042960130.1 (uncharacterized protein LOC122295108 [Carya illinoinensis])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-10
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 1   MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCL 60
           MGIG VVRD+ G + V      Q   +  AAE+ AML  + +  +LG R + +E DAK +
Sbjct: 4   MGIGIVVRDYSGEVHVVLASPKQATKSANAAESWAMLRAVLLRRELGLRQVQLEGDAKMV 63

Query: 61  VQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARWSISSKEYCV 120
           V A++ +   +   G ++E+I+  M       +SF  R  NKV H  AR ++S    C+
Sbjct: 64  VDAVNSNTQNTSWDGQVIEDIKSVMCAQPGWSVSFLGRDGNKVVHETARLALSLSSECI 122

BLAST of Tan0017644 vs. NCBI nr
Match: CAB4266453.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-09
Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = 0

Query: 1   MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCL 60
           MG+GAVVR+    LM    + +    +  A EALAM+   QME D+G+  + +ESD   +
Sbjct: 95  MGLGAVVRNANRELMGVMAKPLIRCLSPKAFEALAMIASCQMEIDVGFTRIIIESDCLEV 154

Query: 61  VQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARWSISSKEYC 119
           ++AI+        +G ++EE+++ +    F+ +   PR+ N V H LA++++S  E C
Sbjct: 155 IKAINRIEFDMSIEGELIEELKELLYRFVFVSVQHQPRTCNFVAHQLAKFALSCNEIC 212

BLAST of Tan0017644 vs. NCBI nr
Match: XP_030970599.1 (uncharacterized protein LOC115990979 [Quercus lobata])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 40/120 (33.33%), Postives = 71/120 (59.17%), Query Frame = 0

Query: 2   GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLV 61
           G+GAV+R+H G +M +  E +         EALA L+ +Q+  DLG++N  +E D+  L+
Sbjct: 93  GVGAVIRNHDGAVMASCAEKLNEAYKAEEIEALAALKALQLAFDLGFQNAILEGDSLGLI 152

Query: 62  QAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFN--PRSTNKVTHNLARWSISSKEYCV 120
           +A+        P GL++E+++  +  + F+ LS++   R+ N V HNLA+ +IS  ++ V
Sbjct: 153 KALKADDHNLSPLGLLVEDVK--LAASNFVSLSYSHIKRNGNSVAHNLAKHAISIPDFQV 210

BLAST of Tan0017644 vs. ExPASy TrEMBL
Match: A0A6J5TRH5 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8771 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = 0

Query: 1   MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCL 60
           MG+GAVVR+    LM    + +    +  A EALAM+   QME D+G+  + +ESD   +
Sbjct: 95  MGLGAVVRNANRELMGVMAKPLIRCLSPKAFEALAMIASCQMEIDVGFTRIIIESDCLEV 154

Query: 61  VQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARWSISSKEYC 119
           ++AI+        +G ++EE+++ +    F+ +   PR+ N V H LA++++S  E C
Sbjct: 155 IKAINRIEFDMSIEGELIEELKELLYRFVFVSVQHQPRTCNFVAHQLAKFALSCNEIC 212

BLAST of Tan0017644 vs. ExPASy TrEMBL
Match: A0A2Z6MDF1 (RNase H domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_120950 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 0

Query: 1   MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCL 60
           +G G  VRDHRGR ++A   I+  R N L  EA+A+ E M      G+ ++  ESD+K +
Sbjct: 62  IGWGWCVRDHRGRFVIAGTNIMHSRLNTLEGEAMAIKEAMDEMVQRGFSHVIFESDSKIV 121

Query: 61  VQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARWSISSKEYCV 120
           V AI           L++  I+  ++ N    + F  R TN   H+LAR + S    C+
Sbjct: 122 VDAITSSHRGISDFSLLISSIKSVLVLNPNFEVKFVKRQTNMTAHSLARVAYSMPSRCI 180

BLAST of Tan0017644 vs. ExPASy TrEMBL
Match: A0A6P5TBX9 (uncharacterized protein LOC110765903 OS=Prunus avium OX=42229 GN=LOC110765903 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 0

Query: 2   GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLV 61
           G+G VVR+ RG  M A V+ IQ        + +A +EGM+   D+G   + +E DA+  +
Sbjct: 56  GVGVVVRNERGEFMGACVKSIQASYGARQTKLMAAIEGMRFSIDMGLNYVILEMDAQVCI 115

Query: 62  QAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARWSISSKEY 118
           + I      SG  GL+ EE +  +   R +   + PRS NK  H LA ++IS  ++
Sbjct: 116 KGILSTEECSGTDGLLFEEAKNLLSKFRGVLCQWTPRSGNKAAHTLAHFAISCNDF 171

BLAST of Tan0017644 vs. ExPASy TrEMBL
Match: A0A6J5XRI2 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS42313 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.3e-09
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 0

Query: 2   GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLV 61
           G+G VVR+  G  M A    +QG       E +A +EG+    D+G+ +  +E D +  +
Sbjct: 56  GVGVVVRNENGEFMAACGRRLQGSYEARQTEFMAAIEGLCFAIDMGFTDAILEMDTQVCI 115

Query: 62  QAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARWSISSKEY 118
           Q+I      +G  GL++EE++  +   R +G  + PR  NKV H LA++ I   E+
Sbjct: 116 QSILSTEECNGVDGLMIEEVKSLLNNFRAVGCQWTPRCGNKVAHALAQFIIHCNEF 171

BLAST of Tan0017644 vs. ExPASy TrEMBL
Match: A0A6P9EHH2 (uncharacterized protein LOC118347671 OS=Juglans regia OX=51240 GN=LOC118347671 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.3e-09
Identity = 36/109 (33.03%), Postives = 63/109 (57.80%), Query Frame = 0

Query: 1   MGIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCL 60
           MG+G V+RD  G+L+ AK    + R++   AE  AMLE M++  +LG+  +W+E DAK +
Sbjct: 84  MGLGVVIRDCNGQLLAAKCANRKCRSSPFIAECSAMLEAMELCKELGFWEVWLEGDAKEV 143

Query: 61  VQAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLAR 110
           + A++         G ++E+++Q +  +      F  R  N+V H+LA+
Sbjct: 144 IDAVNREEDDDSRFGHVIEDLKQSLRQSNAWRAVFTHREGNEVAHHLAK 192

BLAST of Tan0017644 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 35/116 (30.17%), Postives = 53/116 (45.69%), Query Frame = 0

Query: 2   GIGAVVRDHRGRLMVAKVEIIQGRTNVLAAEALAMLEGMQMEGDLGYRNLWVESDAKCLV 61
           GIG ++R+  G ++      +    NVL AE  A+   +       Y+ +  ESDA+ LV
Sbjct: 161 GIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALV 220

Query: 62  QAIHEHALQSGPQGLILEEIRQCMIGNRFIGLSFNPRSTNKVTHNLARWSISSKEY 118
             ++        Q   LE+I+Q +     +   F PR  NKV   +AR SIS   Y
Sbjct: 221 NLLNSDDFWPTLQP-ALEDIQQLLHHFEEVKFEFTPRGGNKVADRIARESISFSNY 275

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038722039.15.5e-1135.78uncharacterized protein LOC120014190 [Tripterygium wilfordii][more]
XP_038704726.15.5e-1137.17uncharacterized protein LOC120000672 [Tripterygium wilfordii][more]
XP_042960130.13.6e-1034.45uncharacterized protein LOC122295108 [Carya illinoinensis][more]
CAB4266453.11.0e-0933.05unnamed protein product [Prunus armeniaca][more]
XP_030970599.11.4e-0933.33uncharacterized protein LOC115990979 [Quercus lobata][more]
Match NameE-valueIdentityDescription
A0A6J5TRH55.1e-1033.05RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS87... [more]
A0A2Z6MDF12.5e-0933.61RNase H domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_1209... [more]
A0A6P5TBX92.5e-0933.62uncharacterized protein LOC110765903 OS=Prunus avium OX=42229 GN=LOC110765903 PE... [more]
A0A6J5XRI23.3e-0931.90RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCU... [more]
A0A6P9EHH23.3e-0933.03uncharacterized protein LOC118347671 OS=Juglans regia OX=51240 GN=LOC118347671 P... [more]
Match NameE-valueIdentityDescription
AT2G34320.11.2e-0630.17Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..113
e-value: 2.0E-9
score: 39.6
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..110
e-value: 2.3E-21
score: 75.9
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..111
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 1..111
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 2..109
e-value: 3.4954E-21
score: 80.0508
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0017644.1Tan0017644.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity