Tan0017608 (gene) Snake gourd v1

Overview
NameTan0017608
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG05: 72478359 .. 72478999 (-)
RNA-Seq ExpressionTan0017608
SyntenyTan0017608
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCCCCACCCAACTTCCATCTTCCCTCCCATCTTACGTCTCATACTCGTATTCTCTCTTTCTCTCTCTATCGCCATCGCCGTTTCTCTCTCTAGATTCGGTATTATATAAGCCATCGCCAGGTAGTGACAGGGTCCAGGTATAGATTATTCGGAACGCCTCTTCGATTTAGGGTTTTGTTTTTGTTCTTCTGAGATGGAGGATTGGAAGCAGAGCAATCGCGAGAACAGAGTGACGATGGAGAAGATCGGAACTCCGTTTCCCGTTCATAGCCAGGTCAGGAAGATCAAGGAGGAATCGGAGACGATCATCGATTGGCGACCGGGACAGCCGGAGATCAGACCGCCCGCCGTCACCTTCCGAGACCTTAATCGGCCGATCTCTCGCTCGCCGCTTGGAATCTCCTGCCGGCCGATTTCAGTGGGGGAATCGTAGAGATATACTCTTGGTTTAGGGCTTATTTCTGTGAGCAGATGGAGATGGAGATTGATTGACTGTTCTCTGTTTTCGTTTCTCTTCCCTTTTCCGATACTACGGATTGAGATAGCCCTAGCCTTGCCTAGTTATTTTCTTTTTCTTTTTCTTTTTCTTCTATTGTAAATATTTTGTTTTGTTTAATAGAGAAATTTTTGGATTTTGT

mRNA sequence

ATTTCCCCACCCAACTTCCATCTTCCCTCCCATCTTACGTCTCATACTCGTATTCTCTCTTTCTCTCTCTATCGCCATCGCCGTTTCTCTCTCTAGATTCGGTATTATATAAGCCATCGCCAGGTAGTGACAGGGTCCAGGTATAGATTATTCGGAACGCCTCTTCGATTTAGGGTTTTGTTTTTGTTCTTCTGAGATGGAGGATTGGAAGCAGAGCAATCGCGAGAACAGAGTGACGATGGAGAAGATCGGAACTCCGTTTCCCGTTCATAGCCAGGTCAGGAAGATCAAGGAGGAATCGGAGACGATCATCGATTGGCGACCGGGACAGCCGGAGATCAGACCGCCCGCCGTCACCTTCCGAGACCTTAATCGGCCGATCTCTCGCTCGCCGCTTGGAATCTCCTGCCGGCCGATTTCAGTGGGGGAATCGTAGAGATATACTCTTGGTTTAGGGCTTATTTCTGTGAGCAGATGGAGATGGAGATTGATTGACTGTTCTCTGTTTTCGTTTCTCTTCCCTTTTCCGATACTACGGATTGAGATAGCCCTAGCCTTGCCTAGTTATTTTCTTTTTCTTTTTCTTTTTCTTCTATTGTAAATATTTTGTTTTGTTTAATAGAGAAATTTTTGGATTTTGT

Coding sequence (CDS)

ATGGAGGATTGGAAGCAGAGCAATCGCGAGAACAGAGTGACGATGGAGAAGATCGGAACTCCGTTTCCCGTTCATAGCCAGGTCAGGAAGATCAAGGAGGAATCGGAGACGATCATCGATTGGCGACCGGGACAGCCGGAGATCAGACCGCCCGCCGTCACCTTCCGAGACCTTAATCGGCCGATCTCTCGCTCGCCGCTTGGAATCTCCTGCCGGCCGATTTCAGTGGGGGAATCGTAG

Protein sequence

MEDWKQSNRENRVTMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLNRPISRSPLGISCRPISVGES
Homology
BLAST of Tan0017608 vs. NCBI nr
Match: KAG7012158.1 (hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-29
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0

Query: 1  MEDWKQSNRENRVTMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLNR 60
          MEDWK +NRENR  MEKIGT FPVHSQVRKIKEESETIIDW PGQPEIRP A  FRD+NR
Sbjct: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNR 60

Query: 61 PISRSPLGISCRPISVGES 80
          PISRSPLGIS RPISVG+S
Sbjct: 61 PISRSPLGISGRPISVGDS 79

BLAST of Tan0017608 vs. NCBI nr
Match: KAG6572977.1 (NF-X1-type zinc finger protein NFXL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.7 bits (330), Expect = 2.7e-27
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MEDWKQSNRENRVTMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLNR 60
          MEDWK +NRENR  MEKIGT FPVHSQVRKIKEESETIIDW PGQPEIRP A  FRD+NR
Sbjct: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNR 60

Query: 61 PISRSPLGISCRPIS 76
          PISRSPLGIS RPIS
Sbjct: 61 PISRSPLGISGRPIS 75

BLAST of Tan0017608 vs. NCBI nr
Match: KAG6584306.1 (DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 61/79 (77.22%), Postives = 67/79 (84.81%), Query Frame = 0

Query: 1   MEDWKQSNRENRVTMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLNR 60
           ME+WKQ+ R     MEKIGTPFPVHSQVRKIKEESE IIDWRPGQPEI+PP   FR++NR
Sbjct: 611 MENWKQNTR-----MEKIGTPFPVHSQVRKIKEESEMIIDWRPGQPEIKPPPAAFREINR 670

Query: 61  PISRSPLGISCRPISVGES 80
            ISRSPLG+S RPISVGES
Sbjct: 671 QISRSPLGVSGRPISVGES 684

BLAST of Tan0017608 vs. NCBI nr
Match: TYJ99047.1 (hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 6.1e-19
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 7  SNRENRVTMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLNRPISRSP 66
          S+   R + EKI  PFPVHSQVRKIKEESETI+DWRPGQPEIRPP   FR     ISRSP
Sbjct: 5  SDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQ----ISRSP 64

Query: 67 LGISCRPISVGES 80
          LGIS RPISVG+S
Sbjct: 65 LGISGRPISVGDS 73

BLAST of Tan0017608 vs. NCBI nr
Match: KGN64190.1 (hypothetical protein Csa_013611, partial [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 14 TMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLNRPISRSPLGISCRP 73
          +MEKI  PFPVHSQVRKIKEES+T IDWRPGQPEIRPP  +FR     ISRSPLGIS RP
Sbjct: 12 SMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQ----ISRSPLGISGRP 71

Query: 74 ISVGES 80
          ISVG+S
Sbjct: 72 ISVGDS 73

BLAST of Tan0017608 vs. ExPASy TrEMBL
Match: A0A5D3BIV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002510 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.0e-19
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 7  SNRENRVTMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLNRPISRSP 66
          S+   R + EKI  PFPVHSQVRKIKEESETI+DWRPGQPEIRPP   FR     ISRSP
Sbjct: 5  SDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQ----ISRSP 64

Query: 67 LGISCRPISVGES 80
          LGIS RPISVG+S
Sbjct: 65 LGISGRPISVGDS 73

BLAST of Tan0017608 vs. ExPASy TrEMBL
Match: A0A0A0LQJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.6e-19
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 14 TMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLNRPISRSPLGISCRP 73
          +MEKI  PFPVHSQVRKIKEES+T IDWRPGQPEIRPP  +FR     ISRSPLGIS RP
Sbjct: 12 SMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQ----ISRSPLGISGRP 71

Query: 74 ISVGES 80
          ISVG+S
Sbjct: 72 ISVGDS 73

BLAST of Tan0017608 vs. ExPASy TrEMBL
Match: A0A498I238 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_023484 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.8e-15
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 1  MEDWKQSN-RENRVTMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLN 60
          ME+   +N R+     E++G  FPVHSQVRKIK+ES+  IDW PG+PE+R P   F+++ 
Sbjct: 1  MENRNSNNSRKMEEGFEEVG--FPVHSQVRKIKQESDKTIDWLPGKPEMRRP--VFKEIT 60

Query: 61 RPISRSPLGISCRPISVGES 80
          R ISRSPLGISCRPISVG+S
Sbjct: 61 RQISRSPLGISCRPISVGDS 76

BLAST of Tan0017608 vs. ExPASy TrEMBL
Match: A0A540KEP9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_041834 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.8e-15
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 1  MEDWKQSN-RENRVTMEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLN 60
          ME+   +N R+     E++G  FPVHSQVRKIK+ES+  IDW PG+PE+R P   F+++ 
Sbjct: 1  MENRNSNNSRKMEEGFEEVG--FPVHSQVRKIKQESDKTIDWLPGKPEMRRP--VFKEIT 60

Query: 61 RPISRSPLGISCRPISVGES 80
          R ISRSPLGISCRPISVG+S
Sbjct: 61 RQISRSPLGISCRPISVGDS 76

BLAST of Tan0017608 vs. ExPASy TrEMBL
Match: A0A540NFV0 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004486 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-14
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 5  KQSNRENRVT--MEKIGTPFPVHSQVRKIKEESETIIDWRPGQPEIRPPAVTFRDLNRPI 64
          + SN   ++   +E++G  FPVHSQV+KIK+ES+  IDW PG PE+R P   F+++ R +
Sbjct: 4  RNSNNSRKIEEGLEEVG--FPVHSQVKKIKQESDKTIDWLPGNPEMRRP--VFKEITRQV 63

Query: 65 SRSPLGISCRPISVGES 80
          SRSPLGISCRPISVG+S
Sbjct: 64 SRSPLGISCRPISVGDS 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7012158.13.8e-2984.81hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6572977.12.7e-2785.33NF-X1-type zinc finger protein NFXL1, partial [Cucurbita argyrosperma subsp. sor... [more]
KAG6584306.11.1e-2577.22DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. s... [more]
TYJ99047.16.1e-1972.60hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa][more]
KGN64190.11.4e-1877.27hypothetical protein Csa_013611, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5D3BIV43.0e-1972.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LQJ26.6e-1977.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1[more]
A0A498I2389.8e-1558.75Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_023484 PE=4 SV=1[more]
A0A540KEP99.8e-1558.75Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_041834 PE=4 SV=1[more]
A0A540NFV02.2e-1455.84Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004486 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34780:SF5OS08G0427800 PROTEINcoord: 1..78
NoneNo IPR availablePANTHERPTHR34780OS08G0427800 PROTEINcoord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0017608.1Tan0017608.1mRNA