Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACAGAATCAAGCATGAGCTCACTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAACCAGTACCACTCTCTCCCTTCCATGGCTGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTCTCTCATCTCCTTTCTTTAGCCCTCTCCATAACACTAAGCTCGCCATTTCCTTCTCTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGTACGCTCTGAACTTTCCTCGTTAATCCCTCGATTCCTTTTGTAATTTCTCTTAATTGTCTCGCTCACTGCTTGAACTGTTGTAATTTCTACTGCTTCTGTTCAATTTTGTTGCCAGTTTCTGTCTGCCCTAATTTTACATTGGTTTCTGAACTGAATCATTGACAATGTAGCTAAATGTTATTATCTTGATGTTGCAGGAAAATTAGGCCCTGCCCATCAACCAATCCGTCTTGTGTTTCTACAAACCCTAAATCGTCATCCTTTGCCTTCCCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAACCGAGCATGATTTGCTTGAATGTTGTTCTAGATGTTTGGTTTCTCTTGGTGTTGTTTTTCATGTTTCTGCTGCTTAATTTATTTGCAGAAGCTACAGGAAGTGATTCTTGAAACGCAGAGGAATGCAAAAATTCAGATGGTGGAAGATACCCCATATGGTAATCAAACTAAAGTTATCAATAGGAGATTTGAACTTTATATTACAAATTGATATGCCTCACCATGTTCTAATTAAACTGCTGAGATAGAGATGAGAATGAACTTAAAAAAAATAAAAATAAAGATAGAGATGAGAAAGACTCCTATTTACCTAATGAGCCGCAGAGCCAACCCATTTGGCTTATTCTTTTGAATTCTTTTTTCTTTTTGTGACCTCAATAAGATATGGGGTGGGGGAGGTTTGAACCGTACCGTCGAGAGTATATCCCTTAACTAGTTGACCTAGGTCTAGGTTGAAGTTGAGCTTATTCTTTTAAATTTAATAATGCTTTTAACAAAGAGAAAGGATGTGAATCTTTAGTTGAATTACAAGTTTTATTTTTGAAATTTAAAATGTATCTAAACAAGCCTCTAAATTTTCAATCTTATATCTAACATGTTTTGAAACTCTAAAAAGTGTCTAATAAACATTTTTGTATTTAATAGGTTTCTGAATTTTAAAAACTCTCATAAGCCAATAAGAAAAAAAAAATCTCATAAGTCAAGGAATAAGGATCTATTACGCACAAAATTGTAAGTTCGTAGAGCTCTTTTTAGATTCAAAATCGGAAGATCAAGAACTTGTTTTGTTTAATGCTTTCAAAATTCAAAGACCAATTAGATAGAATATAGAAAGTTTAGGACGTAGTAGATACTTTAAGTCCTTATTTGATGTAACTCTCAAAGTTCAAAAACCAAACTTAATAACATAACATAAATCCTTAGTTCAAATCCTTATAATGTCATTTCCATTCCTCTCATCTTAATACTGTTCGGCTAACGTGTTAGATTAGATCTCATGTTAATATCTCGAGCCAACACATAAGAGAGAGTATACTTATGCCTTATAGAACAACATGCATTGATGATTATCACAGGTCAGTATTTAGAAGCTGAGGTTGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCTTATAGAATTATGGCAACAAAAGTGACTTATGTGTATCCATTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAAGAAGATCATAGACCAGTTGGATTGGTATTCTCCAACCTTCGATTCTATGGATGACTAATACAAATCCCGTTTCTTCTATTTTCTTTATTTTTTACCCACTCTCATTAAACTCTTTTTCAGCTGCAAATTATTTTGCCCTCATATTAAAAAAAAAAGTTATTTCAATGACATGTCGTCTATGATTAGTCTTCTTAATGTTTGTTGAGTTATTTATATCACTAATTTTGTGAATTATTTTGCAGGGCTTTGGCCCTAGCTCGATTGATTGAGGCACTCTTCATTATTGAAAACTATATAATAATAATAATAATAATAATAATTTTT
mRNA sequence
GACAGAATCAAGCATGAGCTCACTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAACCAGTACCACTCTCTCCCTTCCATGGCTGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTCTCTCATCTCCTTTCTTTAGCCCTCTCCATAACACTAAGCTCGCCATTTCCTTCTCTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGAAAATTAGGCCCTGCCCATCAACCAATCCGTCTTGTGTTTCTACAAACCCTAAATCGTCATCCTTTGCCTTCCCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCAATTCAGAAGCTACAGGAAGTGATTCTTGAAACGCAGAGGAATGCAAAAATTCAGATGGTGGAAGATACCCCATATGGTCAGTATTTAGAAGCTGAGGTTGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCTTATAGAATTATGGCAACAAAAGTGACTTATGTGTATCCATTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAAGAAGATCATAGACCAGTTGGATTGGTATTCTCCAACCTTCGATTCTATGGATGACTAATACAAATCCCGTTTCTTCTATTTTCTTTATTTTTTACCCACTCTCATTAAACTCTTTTTCAGCTGCAAATTATTTTGCCCTCATATTAAAAAAAAAAGTTATTTCAATGACATGTCGTCTATGATTAGTCTTCTTAATGTTTGTTGAGTTATTTATATCACTAATTTTGTGAATTATTTTGCAGGGCTTTGGCCCTAGCTCGATTGATTGAGGCACTCTTCATTATTGAAAACTATATAATAATAATAATAATAATAATAATTTTT
Coding sequence (CDS)
ATGAGCTCACTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAACCAGTACCACTCTCTCCCTTCCATGGCTGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTCTCTCATCTCCTTTCTTTAGCCCTCTCCATAACACTAAGCTCGCCATTTCCTTCTCTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACCACTCCATTTTCTCAATCCAAGGACTTACCAATCGGACTTGAAAACGGGAAAATTAGGCCCTGCCCATCAACCAATCCGTCTTGTGTTTCTACAAACCCTAAATCGTCATCCTTTGCCTTCCCTTTAAGCATTCCTGAGAGTTTTACTGGGAATCCAATTCAGAAGCTACAGGAAGTGATTCTTGAAACGCAGAGGAATGCAAAAATTCAGATGGTGGAAGATACCCCATATGGTCAGTATTTAGAAGCTGAGGTTGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCTTATAGAATTATGGCAACAAAAGTGACTTATGTGTATCCATTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAAGAAGATCATAGACCAGTTGGATTGGTATTCTCCAACCTTCGATTCTATGGATGACTAA
Protein sequence
MSSLQFRPPLVSPWKKKKNQYHSLPSMAALQNSNHKPIFLSHLLSLALSITLSSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD
Homology
BLAST of Tan0017599 vs. ExPASy Swiss-Prot
Match:
Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)
HSP 1 Score: 245.7 bits (626), Expect = 4.8e-64
Identity = 131/195 (67.18%), Postives = 160/195 (82.05%), Query Frame = 0
Query: 32 NSNHKPI-FLSHLLSLALSITLSSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENG 91
+S PI L L+S AL+I+L+S P+LAIPSL+S S PL TTPF+QSK + GL NG
Sbjct: 34 SSTSPPISLLPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNG 93
Query: 92 KIRPCPSTNPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTP 151
KIRPCPSTNP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ+N K ++EDTP
Sbjct: 94 KIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTP 153
Query: 152 YGQYLEAEVD-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKI 211
YG+Y+EAEV+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER+KK+
Sbjct: 154 YGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKL 213
Query: 212 IDQLDWYSPTFDSMD 225
IDQL WY+PTF+SM+
Sbjct: 214 IDQLGWYAPTFESME 225
BLAST of Tan0017599 vs. NCBI nr
Match:
XP_038893869.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida])
HSP 1 Score: 411.8 bits (1057), Expect = 3.9e-111
Identity = 211/230 (91.74%), Postives = 219/230 (95.22%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPW--KKKKNQYH---SLPSMAALQNSNHKPIFLSHLLSLALSITLSSP 60
MSSLQFRPPLVSPW KKKKNQYH S PSMAALQNSNHKPIFLSH+LS ALSITLSSP
Sbjct: 1 MSSLQFRPPLVSPWKKKKKKNQYHSPNSFPSMAALQNSNHKPIFLSHILSFALSITLSSP 60
Query: 61 FPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFAFP 120
FPSLAIPSLNSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPKSSSFAFP
Sbjct: 61 FPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFP 120
Query: 121 LSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLVKGD 180
L+IPE+F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLVKGD
Sbjct: 121 LNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKGD 180
Query: 181 VAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
VAAYRIMATKVTYVYPFTTALGDSKGQEERM+KIIDQL+WYSPTFDSMDD
Sbjct: 181 VAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLNWYSPTFDSMDD 230
BLAST of Tan0017599 vs. NCBI nr
Match:
XP_004154123.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 hypothetical protein Csa_013578 [Cucumis sativus])
HSP 1 Score: 402.5 bits (1033), Expect = 2.4e-108
Identity = 205/232 (88.36%), Postives = 217/232 (93.53%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK----KNQYH---SLPSMAALQNSNHKPIFLSHLLSLALSITLS 60
MSSLQFRPPLVSPWKKK KNQYH S+PSM+ LQN+NHKPIFLSHLLS ALSITLS
Sbjct: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
Query: 61 SPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFA 120
SPFPS+AIPSLNSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKSSSFA
Sbjct: 61 SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
Query: 121 FPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180
FPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
GDVAAYRIMATKVTYVYPFTTALGDSKGQEERM+KIIDQL WYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
BLAST of Tan0017599 vs. NCBI nr
Match:
XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA0055338.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa] >TYJ99264.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa])
HSP 1 Score: 401.7 bits (1031), Expect = 4.0e-108
Identity = 207/233 (88.84%), Postives = 217/233 (93.13%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK-----KNQYH---SLPSMAALQNSNHKPIFLSHLLSLALSITL 60
MSSLQFRP LVSPWKKK KNQYH S+PSM+ALQN NHKPIFLSHLLS ALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 SSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSF 120
+SPFPS+AIPSLNSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPL+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERM+KIIDQL WYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of Tan0017599 vs. NCBI nr
Match:
KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 398.7 bits (1023), Expect = 3.4e-107
Identity = 205/234 (87.61%), Postives = 213/234 (91.03%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKKNQYHSL---------PSMAALQNSNHKPIFLSHLLSLALSIT 60
MSSL FRP LVSPWKKKKN L PSMAAL N NHKPIF+SHLLS ALSIT
Sbjct: 1 MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
L+SPFPSLAIPS NSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFL 180
FAFPLSIPES+TGNPIQKLQEVILETQRNAKIQMVEDTPYGQY+EAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
V+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERMKKII++LDWYSPTF+SM D
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Tan0017599 vs. NCBI nr
Match:
XP_023542750.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 397.5 bits (1020), Expect = 7.6e-107
Identity = 205/234 (87.61%), Postives = 212/234 (90.60%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKKNQYHSL---------PSMAALQNSNHKPIFLSHLLSLALSIT 60
MSSL FRP LVSPWKKK N L PSMAAL NSNHKPIF+SHLLS ALSIT
Sbjct: 1 MSSLHFRPALVSPWKKKSNNNQFLSAVLNRTSPPSMAALPNSNHKPIFISHLLSFALSIT 60
Query: 61 LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
L+SPFPSLAIPS NSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSINPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFL 180
FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQY+EAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
V+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERMKKII++LDWYSPTF+SM D
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Tan0017599 vs. ExPASy TrEMBL
Match:
A0A0A0LRK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)
HSP 1 Score: 402.5 bits (1033), Expect = 1.1e-108
Identity = 205/232 (88.36%), Postives = 217/232 (93.53%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK----KNQYH---SLPSMAALQNSNHKPIFLSHLLSLALSITLS 60
MSSLQFRPPLVSPWKKK KNQYH S+PSM+ LQN+NHKPIFLSHLLS ALSITLS
Sbjct: 1 MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60
Query: 61 SPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSFA 120
SPFPS+AIPSLNSLSSPLSPTTPFSQSK+LP GLENGKI PCPS NPSCVSTNPKSSSFA
Sbjct: 61 SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120
Query: 121 FPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180
FPL+IP++F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180
Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
GDVAAYRIMATKVTYVYPFTTALGDSKGQEERM+KIIDQL WYSPTFDSMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232
BLAST of Tan0017599 vs. ExPASy TrEMBL
Match:
A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)
HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108
Identity = 207/233 (88.84%), Postives = 217/233 (93.13%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK-----KNQYH---SLPSMAALQNSNHKPIFLSHLLSLALSITL 60
MSSLQFRP LVSPWKKK KNQYH S+PSM+ALQN NHKPIFLSHLLS ALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 SSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSF 120
+SPFPS+AIPSLNSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPL+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERM+KIIDQL WYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of Tan0017599 vs. ExPASy TrEMBL
Match:
A0A1S3AZP3 (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)
HSP 1 Score: 401.7 bits (1031), Expect = 2.0e-108
Identity = 207/233 (88.84%), Postives = 217/233 (93.13%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKK-----KNQYH---SLPSMAALQNSNHKPIFLSHLLSLALSITL 60
MSSLQFRP LVSPWKKK KNQYH S+PSM+ALQN NHKPIFLSHLLS ALSITL
Sbjct: 1 MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60
Query: 61 SSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSSF 120
+SPFPS+AIPSLNSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPKSSSF
Sbjct: 61 TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
Query: 121 AFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
AFPL+IP++F+GNPIQKLQE ILETQRN KIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERM+KIIDQL WYSPTFDSMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233
BLAST of Tan0017599 vs. ExPASy TrEMBL
Match:
A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)
HSP 1 Score: 395.6 bits (1015), Expect = 1.4e-106
Identity = 206/234 (88.03%), Postives = 214/234 (91.45%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKK--NQYHSL-------PSMAALQNSNHKPIFLSHLLSLALSIT 60
MSSL FRP LVSPWKKKK NQ+ S PSMAAL N NHKPIF+SHLLS ALSIT
Sbjct: 1 MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
L+SPFPSLAIPS NSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFL 180
FAF LSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQY+EAEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
V+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERMKKII++LDWYSPTF+SM D
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Tan0017599 vs. ExPASy TrEMBL
Match:
A0A6J1K581 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490170 PE=4 SV=1)
HSP 1 Score: 392.1 bits (1006), Expect = 1.5e-105
Identity = 202/234 (86.32%), Postives = 209/234 (89.32%), Query Frame = 0
Query: 1 MSSLQFRPPLVSPWKKKKNQYHSL---------PSMAALQNSNHKPIFLSHLLSLALSIT 60
MSSL FRP LVSPWKK N L PSMAAL N NHKPIF+SHLLS ALSIT
Sbjct: 1 MSSLHFRPALVSPWKKNNNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60
Query: 61 LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120
L+SPFPSLAIPS NSLSSPLSPTTPFSQSKD PIGLENGKIRPCPS NPSCVSTNPKSSS
Sbjct: 61 LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDFPIGLENGKIRPCPSINPSCVSTNPKSSS 120
Query: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYLEAEVDGNFGRDVIEFL 180
FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQY+EAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180
Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKIIDQLDWYSPTFDSMDD 226
V+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERMKKII++LDWYSPTF+SM D
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234
BLAST of Tan0017599 vs. TAIR 10
Match:
AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )
HSP 1 Score: 245.7 bits (626), Expect = 3.4e-65
Identity = 131/195 (67.18%), Postives = 160/195 (82.05%), Query Frame = 0
Query: 32 NSNHKPI-FLSHLLSLALSITLSSPFPSLAIPSLNSLSSPLSPTTPFSQSKDLPIGLENG 91
+S PI L L+S AL+I+L+S P+LAIPSL+S S PL TTPF+QSK + GL NG
Sbjct: 34 SSTSPPISLLPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNG 93
Query: 92 KIRPCPSTNPSCVSTNPKSSSFAFPLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTP 151
KIRPCPSTNP CVSTNP SSSF+FPL+IPE+ T +PI+KL+E I+ TQ+N K ++EDTP
Sbjct: 94 KIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTP 153
Query: 152 YGQYLEAEVD-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMKKI 211
YG+Y+EAEV+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER+KK+
Sbjct: 154 YGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKL 213
Query: 212 IDQLDWYSPTFDSMD 225
IDQL WY+PTF+SM+
Sbjct: 214 IDQLGWYAPTFESME 225
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SW33 | 4.8e-64 | 67.18 | Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... | [more] |
Match Name | E-value | Identity | Description | |
XP_038893869.1 | 3.9e-111 | 91.74 | thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida] | [more] |
XP_004154123.1 | 2.4e-108 | 88.36 | thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 ... | [more] |
XP_008439847.1 | 4.0e-108 | 88.84 | PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA... | [more] |
KAG7012320.1 | 3.4e-107 | 87.61 | Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... | [more] |
XP_023542750.1 | 7.6e-107 | 87.61 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 [Cucurbita pepo sub... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LRK9 | 1.1e-108 | 88.36 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1 | [more] |
A0A5A7UK02 | 2.0e-108 | 88.84 | Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
A0A1S3AZP3 | 2.0e-108 | 88.84 | thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... | [more] |
A0A6J1GT70 | 1.4e-106 | 88.03 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... | [more] |
A0A6J1K581 | 1.5e-105 | 86.32 | thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita maxima... | [more] |
Match Name | E-value | Identity | Description | |
AT4G24930.1 | 3.4e-65 | 67.18 | thylakoid lumenal 17.9 kDa protein, chloroplast | [more] |