Tan0017543 (gene) Snake gourd v1

Overview


Name	Tan0017543
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	transcription elongation factor B polypeptide 3
Location	LG05: 4822925 .. 4826318 (-)
RNA-Seq Expression	Tan0017543
Synteny	Tan0017543

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTTTTTATCAACGGCGCATTCTAGCAACTTGGGGAAGAATATCGCAACATAGAATACCAAAAGGAAATTATCAGATGATCAGATGACGATTGCCGGCCAATTCGTTCGTACCTAGTTCAACGATTCTCGTCTCCGTTTTCTCAGACTGTCGGTAAGGTCCTCAAGATCTAATTTCTCGATCTATCTCAGTTCATATTGTATTTTGTATAGAAATCGAATCGATTTCTTCCTTTTGTTTTTTCTTTTCTTTTTAATTCTTTGCTTTCTGTTTAGGACGATCGAATAAGTTTTCTCAAATCCTTATTTCTTTTATTGAATCCGATCTGTTTGTTTCTTCCGTTGTGATATGTATTGAATGAATTTAGGATTGTTTGCATCGATGTTGAACTTTTTCTGTAGATGCTTAGTTTTTGATGTCCTGAGTTACGAAATGGTTTGATTGAACAGAAAAGCTTGGAATTATTGGTTGTTTTGAAACTCATTACTCGACAGGGGAATTATTTTGTTCTCTTTCGTTGCTTAAAGCTAAGAGATATGTAATGTATATTCAGGTACTTTTTTTCAAGTGTATGGAATTTAGTTAATTCAGGGTCAGGTTTTGGTGAGAGAAGTGCTTGAATGTGATACGCTTGATTTTTCATTTACAGCAGTTGGTTACCTTGAGCTATATTTACCAGTTTATTTATCAAATCAGTACTTTGTCTATTGTTCAAAGAAGTCGCAGTTGTGTAAATTGATTGGTTTGTTTTTGCTTCTTTTTTGCCTTAGCTTGGCAACCTGAGAAAGAAGAGATGTATCGAGTAACAAAAATTCCGTCGTTGGTTGATCTTTGCGTTAACAAAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATTTCCATCTTCTAGAGAGGATTTTGCCACATTGCACTGTTGACCAGTTGATGCATGTGGAGAAAAGTTCGGAAGTAAGATTGGATGAATTTGTTTCTAATTTAACTATCTGGTTTTGCTTTAGTATATATATGCTAAATTGAGTATGAACTTATTTTAGGGAAGAGATTTGACTCCAGTAACGGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAGAGAAAATACCAATACCGTAATTGAGAGGATGCAGCAGAAAAGAGTTGCATTTAGATGGATTCAATTATATGAGGTAGCTTTCCTTACACTTTTCATCTCCTCCTATTTACTTTGAGACGTGTAGTGAATGATAGTTGGCATGATAATGATCTCTCTGAGGAATTACCATTAAATTGAAGTTATCTACTTTCAGGCGAAGATGAAGGACATAGAAAAGAATGAGAGCAAAGCTGCAGATCGAATAAAGCAAAGCTACCTAAAGGAAAATGCCCGTATGTTCTAGAATATTTGCATACTCTCAATAGGATTTCCCCACAATTTTAAATTTAAACTAACAAATAGCTAGATCATGTGATGCATCCACACATGTTATCTGACCATTGTTACCCATTCCCATCAACTGTATTATATTAGAGGTATACCGTAGGTTCATTTACAAATAGATGCTATTGACTTTTTACATGTATTTTAGGAATCAATAATGTTATTGTTAAGTCAAGTAGATATTTTCATAAAATATGAGATCTTGAAGATTATCACGAACATTTTAGGGAAACAAAGCCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTTCGAGCAATAAGAGAAGCTTTGGAGGTAAAATCTATTGCTCCTTGCATTTATTTTGGCTTTTGGGTAATGGATTCTAAATGTGGCAAGGCTGCAGCTGGCTGGCACCATACTAAGAAAAATAATTAACATGTTATTTTTCTCTTGCTTTTTCTTAGGAACTGGATATGGCTGCAATGTGGCAAATACTAAGAACAAGCTGCTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAAAACTATTGAATTTATTCTCTCAAAAACAAAACTATTGAATTGATACCTGAGAGTGGCCAGTCTGAAAATATTGTGCATAGTTATAATTAAAGAAATGGTCTGACAATTTATAGCTTGTTGCTTACTTAGAGACATCGAATAAAATCTAATGTGCCTCAAAGAAAATTAAACATGAAATTTGATCCTTCTTCGCTTAGAATCTAATGCATCGGCAGATCAAATGGCTTTTTCCATCTATTTTAAAGCTTCTTTAACAAAATAATTCTAGAGCGATTGCTTTTTGCACGCTTCAGAACAGAAGCAAATGATTGTTGTTATAACTGGGTGATTTGTAATTTAATCATGGAAGCATGTATATGTAGATCCTTTATCACATCTCCAAAGCACAATCTGACAAATTTCTAGAATCAATAACTCTCATTTATAAACTGTACCTACCCCTCCATGCTTGAAGCAAGGCCCGTTTCCATGTGTGTTCAATGAAGTTTTCCAATACTGATCAACCTTCCTATCTTGACAGTCAAGAGATGAAAAATATAAAAGCCTGGCGGAGAAATGCAGTTCAGAAGAGTTCTGAGTAAGTTGCATTTCTTAGCACTATAATTCTCAATGCTTTCGAAACCATCTTATTCACGAACTCGACGCTGACTTTCATTTCGCCCCTTTCATCTGCAGTATTCCTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGATTCCGCTTCAACTTCTAAAAATACTACCACTCATATGGCCAGAAGATGGTAGCATTTTCATTAGCTTTACTTTTTTTTACCAAATTGCAAGGATCTGTTCTCTCACTCAGCGCAAAGGCTGTGTCTTATCTTCAATTTAGTTATCTCATGGTTTGATAAATTGCTCCTTTCCCCTTCCCATTCCCCAAACACTTCGGAAAAGCCATGCCCTGTGTATAACTTTTTAATTCGTAGTTGTTTTCCCTTATAATGCAATATTGTTTATTTTACATGAATTTTCCTCTTGAAGTATGCAATATTGTTTATTAGTGAGTGTTAACAGGGATCTAATTTAGCAAGTTCTGAACTTTGTGATGTGGTATGTTATTTTAATGCCGTGATTATCAGATGTTCCAACCAAAAAAAAAACTGATAGCTGATCTCGTTTTGGAGTATAAATGATAAATACTCATTGATTCTTTTAGAATATAATGAACTTACTTTTGAAGTACAATCTTAGATGAGTCGTAGAGTTTAAATCAAGAATAAGAAAGCTCAAATTTAAAATGGAGGTTTATTCTTTTAGAATGTAGTGTAATATTACAAACAGAAGTTACTAGTTAGCAAATTTAACCGTTGACAAAGTAATACAAAAAATTTAAAAGTTATGAAAAATAGAAATATAATTCAAGCTAAAATGGTGTAATTTTGATGGTTAAAAATCATGGAAAGAGAATTTTCAGAATTCGATCGGAC

mRNA sequence

ATTTTTTTTTATCAACGGCGCATTCTAGCAACTTGGGGAAGAATATCGCAACATAGAATACCAAAAGGAAATTATCAGATGATCAGATGACGATTGCCGGCCAATTCGTTCGTACCTAGTTCAACGATTCTCGTCTCCGTTTTCTCAGACTGTCGCTTGGCAACCTGAGAAAGAAGAGATGTATCGAGTAACAAAAATTCCGTCGTTGGTTGATCTTTGCGTTAACAAAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATTTCCATCTTCTAGAGAGGATTTTGCCACATTGCACTGTTGACCAGTTGATGCATGTGGAGAAAAGTTCGGAAGGAAGAGATTTGACTCCAGTAACGGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAGAGAAAATACCAATACCGTAATTGAGAGGATGCAGCAGAAAAGAGTTGCATTTAGATGGATTCAATTATATGAGGCGAAGATGAAGGACATAGAAAAGAATGAGAGCAAAGCTGCAGATCGAATAAAGCAAAGCTACCTAAAGGAAAATGCCCGGAAACAAAGCCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTTCGAGCAATAAGAGAAGCTTTGGAGGAACTGGATATGGCTGCAATGTGGCAAATACTAAGAACAAGCTGCTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGGAGAAATGCAGTTCAGAAGAGTTCTGATATTCCTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGATTCCGCTTCAACTTCTAAAAATACTACCACTCATATGGCCAGAAGATGGTAGCATTTTCATTAGCTTTACTTTTTTTTACCAAATTGCAAGGATCTGTTCTCTCACTCAGCGCAAAGGCTGTGTCTTATCTTCAATTTAGTTATCTCATGGTTTGATAAATTGCTCCTTTCCCCTTCCCATTCCCCAAACACTTCGGAAAAGCCATGCCCTGTGTATAACTTTTTAATTCGTAGTTGTTTTCCCTTATAATGCAATATTGTTTATTTTACATGAATTTTCCTCTTGAAGTATGCAATATTGTTTATTAGTGAGTGTTAACAGGGATCTAATTTAGCAAGTTCTGAACTTTGTGATGTGGTATGTTATTTTAATGCCGTGATTATCAGATGTTCCAACCAAAAAAAAAACTGATAGCTGATCTCGTTTTGGAGTATAAATGATAAATACTCATTGATTCTTTTAGAATATAATGAACTTACTTTTGAAGTACAATCTTAGATGAGTCGTAGAGTTTAAATCAAGAATAAGAAAGCTCAAATTTAAAATGGAGGTTTATTCTTTTAGAATGTAGTGTAATATTACAAACAGAAGTTACTAGTTAGCAAATTTAACCGTTGACAAAGTAATACAAAAAATTTAAAAGTTATGAAAAATAGAAATATAATTCAAGCTAAAATGGTGTAATTTTGATGGTTAAAAATCATGGAAAGAGAATTTTCAGAATTCGATCGGAC

Coding sequence (CDS)

ATGTATCGAGTAACAAAAATTCCGTCGTTGGTTGATCTTTGCGTTAACAAAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATTTCCATCTTCTAGAGAGGATTTTGCCACATTGCACTGTTGACCAGTTGATGCATGTGGAGAAAAGTTCGGAAGGAAGAGATTTGACTCCAGTAACGGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAGAGAAAATACCAATACCGTAATTGAGAGGATGCAGCAGAAAAGAGTTGCATTTAGATGGATTCAATTATATGAGGCGAAGATGAAGGACATAGAAAAGAATGAGAGCAAAGCTGCAGATCGAATAAAGCAAAGCTACCTAAAGGAAAATGCCCGGAAACAAAGCCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTTCGAGCAATAAGAGAAGCTTTGGAGGAACTGGATATGGCTGCAATGTGGCAAATACTAAGAACAAGCTGCTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGGAGAAATGCAGTTCAGAAGAGTTCTGATATTCCTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGATTCCGCTTCAACTTCTAAAAATACTACCACTCATATGGCCAGAAGATGGTAG

Protein sequence

MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEMKNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARRW

Homology

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BLAST of Tan0017543 vs. NCBI nr
Match: TYJ98274.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 419.1 bits (1076), Expect = 2.4e-113
Identity = 210/225 (93.33%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYRV KIPSLVDLCVNKAIDN+RFLGDVGETD HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARRW 226
           KNIKAWRRNAVQKSSDIPSTKKPMF GR+SASTSKNT+THMA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKRW 225

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BLAST of Tan0017543 vs. NCBI nr
Match: XP_004143189.1 (transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KAE8646931.1 hypothetical protein Csa_021040 [Cucumis sativus])

HSP 1 Score: 417.5 bits (1072), Expect = 7.1e-113
Identity = 210/225 (93.33%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYRV KIPSLVDLCVNKAIDNLRFLGDVGETD HLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARRW 226
           KNIKAWRRNAVQKSSDI STKKPMFSGR+SASTSKNT+THMA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 225

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BLAST of Tan0017543 vs. NCBI nr
Match: XP_016901950.1 (PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 4.6e-112
Identity = 209/224 (93.30%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYRV KIPSLVDLCVNKAIDN+RFLGDVGETD HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARR 225
           KNIKAWRRNAVQKSSDIPSTKKPMF GR+SASTSKNT+THMA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Tan0017543 vs. NCBI nr
Match: XP_008456387.2 (PREDICTED: transcription elongation factor B polypeptide 3 isoform X1 [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 4.6e-112
Identity = 209/224 (93.30%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYRV KIPSLVDLCVNKAIDN+RFLGDVGETD HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARR 225
           KNIKAWRRNAVQKSSDIPSTKKPMF GR+SASTSKNT+THMA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Tan0017543 vs. NCBI nr
Match: XP_038900478.1 (transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida] >XP_038900479.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida] >XP_038900480.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 412.9 bits (1060), Expect = 1.7e-111
Identity = 208/225 (92.44%), Postives = 218/225 (96.89%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYRV KIPSLVDLCVNKAIDNLRFLGDVGETD HLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKMKDIEKNESKAADRIK
Sbjct: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSY KENARKQSRQIQICSKVPPSSNKRSFGG+ YG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGSVYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARRW 226
           KNIKAWRRNAVQKSSDIPSTKKPMFSGR+SASTSKNT+T MA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRESASTSKNTSTQMAKRW 225

[Close]

BLAST of Tan0017543 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.2e-113
Identity = 210/225 (93.33%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYRV KIPSLVDLCVNKAIDN+RFLGDVGETD HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARRW 226
           KNIKAWRRNAVQKSSDIPSTKKPMF GR+SASTSKNT+THMA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Tan0017543 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.2e-112
Identity = 209/224 (93.30%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYRV KIPSLVDLCVNKAIDN+RFLGDVGETD HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARR 225
           KNIKAWRRNAVQKSSDIPSTKKPMF GR+SASTSKNT+THMA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Tan0017543 vs. ExPASy TrEMBL
Match: A0A1S3C4D6 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.2e-112
Identity = 209/224 (93.30%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYRV KIPSLVDLCVNKAIDN+RFLGDVGETD HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARR 225
           KNIKAWRRNAVQKSSDIPSTKKPMF GR+SASTSKNT+THMA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Tan0017543 vs. ExPASy TrEMBL
Match: A0A6J1G8W9 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451808 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.7e-110
Identity = 205/225 (91.11%), Postives = 214/225 (95.11%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MY V K+PSLVDLCV KAIDNLRFLGDVGETD HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGRENTN V ERMQ+K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSYLKENARKQSRQIQICSKVPP+SNKRSFG  GYG NV NTKNKLLKK+KIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAAGYGSNVTNTKNKLLKKSKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARRW 226
           KNIKAWRRNAVQK+ DIPSTKKPMFSGRDSASTSK+TTTHMAR+W
Sbjct: 181 KNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 225

[Close]

BLAST of Tan0017543 vs. ExPASy TrEMBL
Match: A0A6J1I1I3 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469662 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.0e-109
Identity = 204/225 (90.67%), Postives = 214/225 (95.11%), Query Frame = 0


Query: 1   MYRVTKIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MY V K+PSLVDLCV KAIDNLRFLGDVGETD HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNTVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPVTDKLWKKFYERQFGRE+TN V ERMQ+K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 180
           QSYLKENARKQSRQIQICSKVPP+SNKRSFG  GYG NV NTKNKLLKK+KIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAAGYGSNVTNTKNKLLKKSKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKNTTTHMARRW 226
           KNIKAWRRNAVQK+ DIPSTKKPMFSGRDSASTSK+TTTHMAR+W
Sbjct: 181 KNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 225

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BLAST of Tan0017543 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 194.5 bits (493), Expect = 9.1e-50
Identity = 102/213 (47.89%), Postives = 150/213 (70.42%), Query Frame = 0


Query: 6   KIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDLTPVTD 65
           K PSLVDLCV KAIDN++++G VG  DF LLE+IL HCT++QL H+E +++  DL+P+TD
Sbjct: 9   KPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITD 68

Query: 66  KLWKKFYERQFGRENTNTVIERMQQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQSYL 125
           K WK FY++ +G E+   +IE ++  +V  F+W  LYE K+  +++ E +   R+K+ Y 
Sbjct: 69  KFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYK 128

Query: 126 KENARKQSRQIQICSKVPPSSNKRSF-GGTGYGCNVANTKNKLLKKAKIEVLQSQEMKNI 185
            EN RKQSRQ ++CSK PPS  KR F G +  G N+ + K+ ++KKAKI++L+SQE+KN+
Sbjct: 129 DENERKQSRQTKVCSKAPPS--KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNL 188

Query: 186 KAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKN 217
            A +RN +QKS  I + KK   S  +S STS++
Sbjct: 189 TAIKRNTIQKSFSISTPKKTGLSA-NSPSTSRS 218

[Close]

BLAST of Tan0017543 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 192.2 bits (487), Expect = 4.5e-49
Identity = 100/213 (46.95%), Postives = 150/213 (70.42%), Query Frame = 0


Query: 6   KIPSLVDLCVNKAIDNLRFLGDVGETDFHLLERILPHCTVDQLMHVEKSSEGRDLTPVTD 65
           K PSLVDLCV KAIDN++++G VG  DF LLE+IL HCT++QL H+E +++  DL+P+TD
Sbjct: 9   KPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITD 68

Query: 66  KLWKKFYERQFGRENTNTVIERMQQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQSYL 125
           K WK FY++ +G E+   +IE ++  +V  F+W  LYE K+  +++ E +   R+K+ Y 
Sbjct: 69  KFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYK 128

Query: 126 KENARKQSRQIQICSKVPPSSNKRSF-GGTGYGCNVANTKNKLLKKAKIEVLQSQEMKNI 185
            EN RKQSRQ ++CSK PPS  KR F G +  G N+ + K+ ++KKAKI++L+SQE+KN+
Sbjct: 129 DENERKQSRQTKVCSKAPPS--KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNL 188

Query: 186 KAWRRNAVQKSSDIPSTKKPMFSGRDSASTSKN 217
            A +RN +QKS  I + K+   S  ++ STS++
Sbjct: 189 TAIKRNTIQKSFSISAPKRTGLSA-NAPSTSRS 218

The following BLAST results are available for this feature:

BLAST of Tan0017543 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017543 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98274.1	2.4e-113	93.33	transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma...	[more]
XP_004143189.1	7.1e-113	93.33	transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KA...	[more]
XP_016901950.1	4.6e-112	93.30	PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis m...	[more]
XP_008456387.2	4.6e-112	93.30	PREDICTED: transcription elongation factor B polypeptide 3 isoform X1 [Cucumis m...	[more]
XP_038900478.1	1.7e-111	92.44	transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispi...	[more]

BLAST of Tan0017543 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGR1	1.2e-113	93.33	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	2.2e-112	93.30	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A1S3C4D6	2.2e-112	93.30	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1G8W9	2.7e-110	91.11	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1I1I3	1.0e-109	90.67	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima O...	[more]

BLAST of Tan0017543 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	9.1e-50	47.89	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	4.5e-49	46.95	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..118
None	No IPR available	GENE3D	6.10.250.3180		coord: 21..127 e-value: 2.1E-22 score: 81.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..225
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 3..220
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 26..135 e-value: 2.7E-27 score: 95.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017543.1	Tan0017543.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity