Tan0017534 (gene) Snake gourd v1

Overview


Name	Tan0017534
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	40S ribosomal protein S13
Location	LG07: 5689370 .. 5692229 (-)
RNA-Seq Expression	Tan0017534
Synteny	Tan0017534

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCGGCCATCGCAGTGGAGCAACTCTTATCGAACTCCAGAGCTAGGGCAACACAGAGTTCAACTGCCTTAGACTAGAAGATAACCATGGGTCGTATGCACAGTCGAGGGTTCGTTTCTATTCTCCGATTCGTTTTAGATTCAATTCTATTTCATCTGTTCATTTCATTTGCTGAAATCATTCCCAACATTCCTTCCCTTTTTCTTTTACAGTAAGGGTATTTCGGCCTCTGCATTGCCCTACAAGAGGACGCCGCCGAGTTGGCTCAAGATCTCTTCTACGGATGTAAGTGTTTTCTTGACTCCCTCTGTCTGTTTGTTTGATGGATGGTGAATGCGATGGGAAGATATGAGTTTGGAGGGTAGCTTTCAGGATTTTGTTATTCCCTCTGTGATAGGCTTTTTTTTTTGTTCGTATTGGTTCTTGAATCTAGGTTGAAGATAACATCTGCAAGTTTGCGAAGAAGGGCTTAACCCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGCGTTACTGGAAGCAAAATCTTGCGTATTCTTAAAGCCCATGGTATTCTTCTTTTCCATGTCGAGCATATCGATTTAGAGTAATTGCCAAGTTGTTTATGAGCAATTTTGTCAATTGAGTTTGGGGTTGTACTATTTAGGGCTGGCACCAGAGATCCCAGAGGATCTTTATCACTTAATCAAGAAAGCTGTCTCCATCCGTAAGCATTTGGAGAGGAATAGGAAGGACAAGGACTCCAAATTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCTCGCTACTACAAGAAGACCAAGAAGCTTCCACCAGTTTGGAAATAGTAAGTTTTCTTCGTATTCTGTTCAGTTAGACTGACACTGATATGCCGTATTTGATATGATCTATTCAAAGAATGTAGTTCGTGGTTATGCTTTATTTTTGACGTCGAGCTTTATTTTTAAATTTATCAAATCATTAATTTAGTTTCATATTTTAATTTAGTTACTTTTCTTCTCATTCTGAGCTGCCCTGCGCTGGAGCTTGGGGTACCAAGCCTGGTCTGTGGTTTGAGTTTTTTTCTCAATAAAATTACCTTCAACCAAATCAATCAACAATCATGTTGACCTTTCACCAGATGAAATTTTATGTTAAAATATGTTATGGTGCATAATCCATTTTTCAAAAATTTAGTAAGAAGAAAGTACATGAAGGAAACAGAGAAGAAAATACATTTTTGTTTGTTATCCAATGTAGAATACTTGCGTTGGTTTTACTATCTTTTTAAGAAAAATTGGAGCATGAAAGTGTTCGGCATTTTGTAGCAAGTTGTTAAATTTAGTGTTTCTTTTACATATGGGGTTATTTGAATATCATCCTCTCGGCTGTGTTATTCTTATTGGAAGGTGATGCTTGTGACCTCGTTCTATTGAGTGCCAGTTTCCTCTTCTGCATTTCGATTTAGTGCTAATGTCGTAACCTGATTTCGTAACCTGATTTGGGTGTAGGGGTGTACATAAGCCGGGTTGGGGGAGATTTTTGGACCAATCCGAAAATTCAGATTGGTCATTCCTTCAACCCAACCAACCCTATTCATGAGATTAACCTAACCCAACCCGAGCCTAAAACACCCAACCCGAGAACCGATCCGAACTTTTCGGTTCTCCAAATTTCTAACCCAACCCAAACCGAAAAAAACATAACCCTACCCAACCCTTTCGGGTTGCTCGGATTAACGGGTTAGTTAAACTTTTTCTACTATCATGTTACCAAGGTAGCTATATATCAGAATTGATTGTTATTATATTATAGCCTCCAAGAGGTGGTGGCCCCCTTAGTAAGGGCTTGGAGTCTATTGGTCATACCGGCTCAGAGGTCTCAGGTTCGAGCCTTCAATTTGAGCTTAATAAATAAAAACCCTTGATTTGGGTCTAGCCCTTGGGGTGGGCACGGGTGCCCCAAGGTATAGGGGAGCCAAGCTCTGACATTAGATTATGGTTCCTTAGTTTTTATTTTATTTGTTTTCCAAAGTTCTATTTTGGTATCTGGACATTGCATAAAAATTTATTTTGGTATTTGTTTGGGTGTTTTAAGAGAATCTTACTCAATAACATGTAAGCTTGTGTTCTAAATCCCGTGTCCACATGTACCATATGAAATGAGTGGACTTCTACACTTCCTGCTGCATTTGATCTGACCGAATGGGTATCAAGCTTTGAAATTGGTCTAAAATTTTAGTTAAATACAATAGGGAGATTTACTATCTAGGGCTGGAATGCATTCTTGTTTTTGTTCACGATTAATGTGAAACATGTAGGAAGCTTATTGACTAAATTATAATTTATTCCTTCGTTTCCATATTACTTTAATTTCTCTTAATTTGCTAACGGTTAAGTTGGCTTCAACTCCCGATAAAAATTTCACCTTTACTAGTTTGTTAGATATAGGAAATCTCTCGAGGATCATCCGTGTCCTAATGAAGTTTCCTTTTCCTTGCAGCGAGTCAACAACTGCCAGCACCCTGGTTGCATAATTTTCAGTAAGGGCGATTGGTGGCTATAATTTTCCGAGGTCAGGTGGATCACTGAGAATTGCGTCTTTTTTTTTTTTTAGTAGTTTAGTTTGGAATCTGTAGACTTATTTGGCTAGATTTATAAAGCAAACCAGAAAAGACTGCGTTGCCTCGGATGGCAGGATGTTTCTTTCACAGGTGTATTATATATTTTGAAGGTATAACTTATAAGGTCAAGTTCTGTTTGAAAATTCTTTTTTTGCGATATGAATGCGACCAAAACCATCAACTTGAAGCAAAAGTATTTTTGTTGGGAAATAATTATCAACGAGGAGG

mRNA sequence

ATTCGGCCATCGCAGTGGAGCAACTCTTATCGAACTCCAGAGCTAGGGCAACACAGAGTTCAACTGCCTTAGACTAGAAGATAACCATGGGTCGTATGCACAGTCGAGGTAAGGGTATTTCGGCCTCTGCATTGCCCTACAAGAGGACGCCGCCGAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAACATCTGCAAGTTTGCGAAGAAGGGCTTAACCCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGCGTTACTGGAAGCAAAATCTTGCGTATTCTTAAAGCCCATGGGCTGGCACCAGAGATCCCAGAGGATCTTTATCACTTAATCAAGAAAGCTGTCTCCATCCGTAAGCATTTGGAGAGGAATAGGAAGGACAAGGACTCCAAATTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCTCGCTACTACAAGAAGACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCCAGCACCCTGGTTGCATAATTTTCAGTAAGGGCGATTGGTGGCTATAATTTTCCGAGGTCAGGTGGATCACTGAGAATTGCGTCTTTTTTTTTTTTTAGTAGTTTAGTTTGGAATCTGTAGACTTATTTGGCTAGATTTATAAAGCAAACCAGAAAAGACTGCGTTGCCTCGGATGGCAGGATGTTTCTTTCACAGGTGTATTATATATTTTGAAGGTATAACTTATAAGGTCAAGTTCTGTTTGAAAATTCTTTTTTTGCGATATGAATGCGACCAAAACCATCAACTTGAAGCAAAAGTATTTTTGTTGGGAAATAATTATCAACGAGGAGG

Coding sequence (CDS)

ATGGGTCGTATGCACAGTCGAGGTAAGGGTATTTCGGCCTCTGCATTGCCCTACAAGAGGACGCCGCCGAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAACATCTGCAAGTTTGCGAAGAAGGGCTTAACCCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGCGTTACTGGAAGCAAAATCTTGCGTATTCTTAAAGCCCATGGGCTGGCACCAGAGATCCCAGAGGATCTTTATCACTTAATCAAGAAAGCTGTCTCCATCCGTAAGCATTTGGAGAGGAATAGGAAGGACAAGGACTCCAAATTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCTCGCTACTACAAGAAGACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACTGCCAGCACCCTGGTTGCATAA

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Homology

[Close]

BLAST of Tan0017534 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.0e-78
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.8e-75
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.1e-75
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.0e-75
Identity = 140/151 (92.72%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.2e-69
Identity = 132/151 (87.42%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. NCBI nr
Match: XP_038874585.1 (40S ribosomal protein S13-like [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 6.5e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. NCBI nr
Match: XP_022922396.1 (40S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022970202.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_022996440.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023534749.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6579439.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016913.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6606139.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. NCBI nr
Match: XP_004147576.1 (40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KGN50199.1 hypothetical protein Csa_000544 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. NCBI nr
Match: XP_022157239.1 (40S ribosomal protein S13-like [Momordica charantia])

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. NCBI nr
Match: XP_006421743.1 (40S ribosomal protein S13 [Citrus clementina] >XP_006445274.1 40S ribosomal protein S13 [Citrus clementina] >XP_006490240.1 40S ribosomal protein S13 [Citrus sinensis] >XP_006490912.1 40S ribosomal protein S13 [Citrus sinensis] >XP_012489762.1 PREDICTED: 40S ribosomal protein S13 isoform X1 [Gossypium raimondii] >XP_017616110.1 PREDICTED: 40S ribosomal protein S13-like [Gossypium arboreum] >XP_021668549.1 40S ribosomal protein S13 [Hevea brasiliensis] >XP_022765760.1 40S ribosomal protein S13-like [Durio zibethinus] >XP_038994387.1 40S ribosomal protein S13-like [Hibiscus syriacus] >XP_039044602.1 40S ribosomal protein S13-like [Hibiscus syriacus] >PIN07142.1 40S ribosomal protein S13 [Handroanthus impetiginosus] >TYI54663.1 hypothetical protein E1A91_D11G091100v1 [Gossypium mustelinum] >GAY41352.1 hypothetical protein CUMW_058810 [Citrus unshiu] >ESR34983.1 hypothetical protein CICLE_v10006145mg [Citrus clementina] >ESR58514.1 hypothetical protein CICLE_v10022677mg [Citrus clementina])

HSP 1 Score: 297.4 bits (760), Expect = 7.2e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. ExPASy TrEMBL
Match: A0A6J1HYG9 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. ExPASy TrEMBL
Match: A0A6J1E411 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. ExPASy TrEMBL
Match: A0A0A0KMS8 (Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. ExPASy TrEMBL
Match: A0A6J1DVX9 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111023995 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. ExPASy TrEMBL
Match: A0A1S3ATA6 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.0e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-76
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of Tan0017534 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-76
Identity = 140/151 (92.72%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:

BLAST of Tan0017534 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.0e-78	97.35	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59224	1.8e-75	93.38	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	3.1e-75	93.38	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	7.0e-75	92.72	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
Q69UI1	1.2e-69	87.42	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of Tan0017534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874585.1	6.5e-78	100.00	40S ribosomal protein S13-like [Benincasa hispida]	[more]
XP_022922396.1	1.4e-77	99.34	40S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosoma...	[more]
XP_004147576.1	1.4e-77	99.34	40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribos...	[more]
XP_022157239.1	1.4e-77	99.34	40S ribosomal protein S13-like [Momordica charantia]	[more]
XP_006421743.1	7.2e-77	98.68	40S ribosomal protein S13 [Citrus clementina] >XP_006445274.1 40S ribosomal prot...	[more]

BLAST of Tan0017534 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYG9	7.0e-78	99.34	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 ...	[more]
A0A6J1E411	7.0e-78	99.34	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=...	[more]
A0A0A0KMS8	7.0e-78	99.34	Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G15...	[more]
A0A6J1DVX9	7.0e-78	99.34	40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111023995 PE...	[more]
A0A1S3ATA6	7.0e-78	99.34	40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1	[more]

BLAST of Tan0017534 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	1.3e-76	93.38	ribosomal protein S13A	[more]
AT3G60770.1	5.0e-76	92.72	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..60 e-value: 9.1E-40 score: 148.1
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 1..60 e-value: 3.2E-31 score: 107.2
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 70..149 e-value: 2.9E-15 score: 66.7
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 74..145 e-value: 4.7E-15 score: 55.5
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 98..128
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 70..143 e-value: 6.85829E-27 score: 94.107
None	No IPR available	GENE3D	1.10.287.10		coord: 83..151 e-value: 8.8E-41 score: 140.1
None	No IPR available	GENE3D	4.10.860.130		coord: 35..82 e-value: 6.4E-29 score: 101.4
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..151
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..151
IPR023029	Ribosomal protein S15P	HAMAP	MF_01343_A	Ribosomal_S15_A	coord: 3..149 score: 31.952454
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 66..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017534.1	Tan0017534.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome