Tan0017488 (gene) Snake gourd v1

Overview


Name	Tan0017488
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	F-box protein
Location	LG04: 4633988 .. 4637714 (-)
RNA-Seq Expression	Tan0017488
Synteny	Tan0017488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATGACGTCGTCATGTGTTGAGTGAGTTCCGAGCTTTGTGTGGGCTATCTATGGCGCTGGCGGTCAAAACTCGAACTCGAAGGCCGATATGAGCTGAGTGGTAAAGAAGAACCAGAGCCGAAGGCTGTAATTTCGAAGATGGAAGAGAACAAGCAGAGAAAGTGGAAAAGAAAAGGCAATTCATCCTCGTCGGCTCGAATCAACAATTTGGACGATGGCTGTTTAATGCATATTTTCAGCTTCCTTTCCCCCATACCAGGTACCTTTTTCTCTCTCCCTCTCTGCAGGCTGCCGCGATATGTTTCAATTCAATTTTTGGGATTCCTATTTGAGGGGATTCTTTTTGTTCCCTCTTCAAATTGCTTTCTTCAGCTCAAATTGAAGGATTCTGCTTGTTTATGGTGCAAAATTCGGAGGTTTGCGGGAAGGAAAACAGGGAAAATCTTGCAATTTCTGGGTGCTTCTGGAAATGGGTTGTGAGAAGAAAAATGATTGTGTTTTTGGGTTTGATTTCAGTTGGGAATTATTATTTCATTGTATGAAGTGGGGTACGTACCTGTTCGTTGTTCCAGCATATCTAAATCGAAAAAAAAACTTGTTTGAAGAGATAGAGGGCTTAAACTTCTTTATGTTGGATTTATCGGCGTCTTTAATTGAGCCTAATCAGTTTTCTTTTCATTATGTGTGGTTTAAGAGAATTTCTGGAGCCTTATCAGTTCTCAATATGTGAGGTTTAAGAGAATTTCTTATAAAGTTGGAAGTTCTTTCCTTAGACCTTGGATATGAATAGGTTGGGCTAGATGGTTGGAAAGAGAGAAGTAAATTTTTGGAGACAAAAGTGAAGATCTTGATGAAGTTTAACTAAATATTGTACTCTGTGTTTTAAAAAAGCCCTTTCGGGTGCTCGTCTAGGCGCCTGGGCGCAAGGCTCACCTTAAGCGCCTCGCCTCTTGTAAGAAGGCGTGCGCCTCTAGGGCTTCTTAAGTTTTTTTTTTTTTTTTTTTTTAGTTTTAATAGTAAAACGTATTGCTTTACTTATTTTAAATATATATTTAAGGCTATTCAGTGAAGAAGAGATTGATATTTAAGGTTTTTGTTCTTGTATTGTTTATAATTTATTAGTGTTGTATTATTTCATGTTTTTTAATGGAGTATCTATTGTCTCTATGTTCAAAAACTAATACTTGAACCTTATTTCTTTGACCTATTTTTCTTGGTTAAAACTTAATTTCTTCTCATGAAGAGTTTTTTCTTATTGTGTATGTATACATATATATTATATTTTTTATATATATATATATAGTGCGCCTTAGAAAAAAAAAGCCCGCGCCTTTTGGTGCGCGTTGCGCCGGCTATTACGCCAGCCTTTAAAAACACTATTTGTACTGACCATTGCTCTAAGAATGACATTTCTTAATATTTGTGTATTTCTTTTGCTTCTATTCTAGTGAGAAAATCTTTATCATTAGTCTAGTGAAGTAAGTCGATGTTGCCCGCATATTTCCATGGAGTTTCTGCCTTTTCTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTATTTGGCATGTCACCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCTGAGCCTGGAGTTTTCCCAACCATTGATGCAGCTGTTGCTGCTGCTAGGCAAGTTTTTGCATGTTTATGTTTTTTAATTGAGGAAAGAATAAGAGTCAGCTGTTAATAGAGTCTGAATGATTTGTTTTTCATAGGCCTGGTGACACCATACTAATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATTACAAAACCACTTTGCCTGGTATGTTCTTTTTCCCTCCTTCGTCTGGCTGCTTGGCAGTGAAATTTGATTCTTCATGGTTTAAATGTCATTCAATTGTCCGGCATCTCTGCAGAAATCATATCTGGTTTGTGAATAAACACCTTCAAAAAAGTGCCCTCTTATAAGAAGAACAAGAAATGTTATCAGGGTCTCTAAAAAGGTTGCTATATAAAGCTAGAGTTTGGGTTCGTGTTATTCAGATTTTAAAAAAATGTTAGCAGAATTTCCTCCTTTTTGTTATGAAACTAAGAAATTATTGGATCTAACAACCTCGACCCTAGTCCCTAGCTACAAAATATAACTGGAGTCTTAAAAGAAGGTTGCTATGGTGAGGCTAGTTAGCTATTTGGGTTCTGTTATGTAGTTTTAAGGTGAACCTCTCTCTCTCTCTCTCTCTCTCTAGTTTCAGTACTCCAGAAAAAAAAATGTGAAACTGGTTTTCAGTGAAACACTCATTTCATAAAGAACTTAAGTTTTGCTGTTTTCCATTATTTAACTTAACGTAATATTGTCAGATTGGTGGAGGTGAACTTCCTGAGGAGACAACACTTTTCTGTACTCGTGGTTCGGAAAGGTACATGGGATATAATGTAATTTGCAATGGTTAATAGCCTCTCCATAGCAACCTTCTCTTGACTAATAAAATTCTCCATAGCGTTGTTAGGGCTCTCTAATTAAATACACCATTTACTTTTGGCGACTTCTCTTGACTAATATATTCTTTTCATCATTTACTGTATTGCATATTCATTCAGCAGTTGGGTTGGGAGAAGGGCTCACAAAGACTTCTGTTTTTTATTTGGTTTAAATCTCATTTTGATAATAGAACTTTCATATTTGTTTCATATTTGTTTCATTTTGGTCCCCAACTTTCAGAATAGCCTCGAACTTAAATAATCATTTGGGTCCTTGAACTTTGAAACTGTCTAGCCCTTGAACTTTCAGAAAATAGCCAGCTATTTTGGTCTTTATTATTATTTTGCCATCTAATAATAGTCTCATCCAACCTATAAGAGTCCAATAGATGTCTATGTTATCATATTAATACGCACACTAGTCACATTATCCATAATCCATATGTTAAAGGAAAAATGATGGAAAAGACCAAAATAGTTGTTTTTCTTAAAGTTCAAGGGCTAAGGTAGATATTTTGAATGTTCAAGGAGTCAAGGACTAAAATGGGATGAACTTAAGGACACATTTTCGAGAGCTGAAAGTTTGGGATTCAAAGGAGGATTTAAACCTTTTTATTATATGTTTTTTAGTGGCAACTTTTTGAGTATGTACTTTCTGTTTCTTCTTAACAGTGCTTTCGAGTTCCTCTGTACCAGTAAACTTTCTAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGAAAGGGAAGATTAATTATAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACAGCGAGTCCCGATAAGTTATTGCCTTCCTCGGTGAAGGGTGGTTATACCGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGTGCCAAAGCTGTCCTAACGAGCGAGGACCTGGCATTACAACACGTTCGAGTTATTTATGCTCGAACAGCTTTGTTCTTTTGGTTTGATGTTGAATACAAGCTATAGTAATTCCCTTGTAATCTGTTAGCAATGTGTATCTGTTTCAACTGGTTAATTCTTAGATATGTTGTTATATTGGCGATTATTTAACTTGTACGATGCCTCTGTTTAGGCTCTTGTCATAATCCCTTTCGCTGTAAAACTTTTCGTGATCTCTTTGTTTTTTATCCTTAGCCTTTTCTTTT

mRNA sequence

ATGAATATGACGTCGTCATGTGTTGAGTGAGTTCCGAGCTTTGTGTGGGCTATCTATGGCGCTGGCGGTCAAAACTCGAACTCGAAGGCCGATATGAGCTGAGTGGTAAAGAAGAACCAGAGCCGAAGGCTGTAATTTCGAAGATGGAAGAGAACAAGCAGAGAAAGTGGAAAAGAAAAGGCAATTCATCCTCGTCGGCTCGAATCAACAATTTGGACGATGGCTGTTTAATGCATATTTTCAGCTTCCTTTCCCCCATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTATTTGGCATGTCACCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCTGAGCCTGGAGTTTTCCCAACCATTGATGCAGCTGTTGCTGCTGCTAGGCCTGGTGACACCATACTAATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATTACAAAACCACTTTGCCTGATTGGTGGAGGTGAACTTCCTGAGGAGACAACACTTTTCTGTACTCGTGGTTCGGAAAGTGCTTTCGAGTTCCTCTGTACCAGTAAACTTTCTAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGAAAGGGAAGATTAATTATAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACAGCGAGTCCCGATAAGTTATTGCCTTCCTCGGTGAAGGGTGGTTATACCGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGTGCCAAAGCTGTCCTAACGAGCGAGGACCTGGCATTACAACACGTTCGAGTTATTTATGCTCGAACAGCTTTGTTCTTTTGGTTTGATGTTGAATACAAGCTATAGTAATTCCCTTGTAATCTGTTAGCAATGTGTATCTGTTTCAACTGGTTAATTCTTAGATATGTTGTTATATTGGCGATTATTTAACTTGTACGATGCCTCTGTTTAGGCTCTTGTCATAATCCCTTTCGCTGTAAAACTTTTCGTGATCTCTTTGTTTTTTATCCTTAGCCTTTTCTTTT

Coding sequence (CDS)

ATGGAAGAGAACAAGCAGAGAAAGTGGAAAAGAAAAGGCAATTCATCCTCGTCGGCTCGAATCAACAATTTGGACGATGGCTGTTTAATGCATATTTTCAGCTTCCTTTCCCCCATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTATTTGGCATGTCACCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCTGAGCCTGGAGTTTTCCCAACCATTGATGCAGCTGTTGCTGCTGCTAGGCCTGGTGACACCATACTAATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATTACAAAACCACTTTGCCTGATTGGTGGAGGTGAACTTCCTGAGGAGACAACACTTTTCTGTACTCGTGGTTCGGAAAGTGCTTTCGAGTTCCTCTGTACCAGTAAACTTTCTAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGAAAGGGAAGATTAATTATAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACAGCGAGTCCCGATAAGTTATTGCCTTCCTCGGTGAAGGGTGGTTATACCGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGTGCCAAAGCTGTCCTAACGAGCGAGGACCTGGCATTACAACACGTTCGAGTTATTTATGCTCGAACAGCTTTGTTCTTTTGGTTTGATGTTGAATACAAGCTATAG

Protein sequence

MEENKQRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYARTALFFWFDVEYKL

Homology

[Close]

BLAST of Tan0017488 vs. ExPASy Swiss-Prot
Match: Q94FT2 (F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 5.0e-94
Identity = 170/255 (66.67%), Postives = 200/255 (78.43%), Query Frame = 0


Query: 6   QRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 65
           + K K++    S   +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 66  ERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEET 125
           +R +KDLS+PGVF  I++AV+AARPGDTILI  GG +  SNIQI KPLCL+GGGE+P+ET
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDET 139

Query: 126 TLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCP 185
           TL C RGS+SA E L T KL+NLTVKAELGCCLLHR GRL IDGCVLQCE+NPLD+LSCP
Sbjct: 140 TLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCP 199

Query: 186 IVCTASPDKL--------LPSSVKGGY-TDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 245
           IV TA  + +        +  +V G    + V+V QTRIEGGAKAV T  DL LQ VRV+
Sbjct: 200 IVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVM 259

Query: 246 YARTALFFWFDVEYK 252
           Y++  L+FWFDV+Y+
Sbjct: 260 YSKAYLYFWFDVDYE 274

[Close]

BLAST of Tan0017488 vs. NCBI nr
Match: XP_004142419.1 (F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protein Csa_008966 [Cucumis sativus])

HSP 1 Score: 491.1 bits (1263), Expect = 5.7e-135
Identity = 240/252 (95.24%), Postives = 244/252 (96.83%), Query Frame = 0


Query: 1   MEENKQRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 60
           MEENKQRKWKRKG SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR
Sbjct: 21  MEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 80

Query: 61  LWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 120
           LWLRVERSIKDLSEPGVFPTI+AAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE
Sbjct: 81  LWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 140

Query: 121 LPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 180
           LPEETTLFCTRGSESA EFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCESNPLD
Sbjct: 141 LPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPLD 200

Query: 181 YLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYART 240
           YLSCPIVCTASPDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVIYART
Sbjct: 201 YLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVIYART 260

Query: 241 ALFFWFDVEYKL 253
           ALFFWFDVEYKL
Sbjct: 261 ALFFWFDVEYKL 272

[Close]

BLAST of Tan0017488 vs. NCBI nr
Match: XP_022139176.1 (F-box protein SKIP5 [Momordica charantia])

HSP 1 Score: 489.2 bits (1258), Expect = 2.1e-134
Identity = 242/254 (95.28%), Postives = 247/254 (97.24%), Query Frame = 0


Query: 1   MEENKQRKWKRKGN--SSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH 60
           ++E KQRKWKRKG   SSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH
Sbjct: 10  VQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH 69

Query: 61  PRLWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG 120
           PRLWLRVERSIKDLSE GVFPTI+AAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG
Sbjct: 70  PRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG 129

Query: 121 GELPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNP 180
           GELPEETTLFCTRGSESA EFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNP
Sbjct: 130 GELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNP 189

Query: 181 LDYLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYA 240
           LDYLSCPIVC+A+PDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYA
Sbjct: 190 LDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYA 249

Query: 241 RTALFFWFDVEYKL 253
           RTALFFWFDVEY L
Sbjct: 250 RTALFFWFDVEYNL 263

[Close]

BLAST of Tan0017488 vs. NCBI nr
Match: XP_008446937.1 (PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 [Cucumis melo var. makuwa] >TYK09305.1 F-box protein SKIP5 [Cucumis melo var. makuwa])

HSP 1 Score: 487.6 bits (1254), Expect = 6.3e-134
Identity = 238/252 (94.44%), Postives = 243/252 (96.43%), Query Frame = 0


Query: 1   MEENKQRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 60
           MEENKQRKWKRKG SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR
Sbjct: 21  MEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 80

Query: 61  LWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 120
           LWLRVER+IKDLSEPGVFPTI+AAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE
Sbjct: 81  LWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 140

Query: 121 LPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 180
           LPEETTLFCTRGSESA EFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCESNPLD
Sbjct: 141 LPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPLD 200

Query: 181 YLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYART 240
           YLSCPIVCTASPDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVIYART
Sbjct: 201 YLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVIYART 260

Query: 241 ALFFWFDVEYKL 253
           AL FWFDVEYKL
Sbjct: 261 ALLFWFDVEYKL 272

[Close]

BLAST of Tan0017488 vs. NCBI nr
Match: XP_022966937.1 (F-box protein SKIP5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 487.3 bits (1253), Expect = 8.2e-134
Identity = 237/252 (94.05%), Postives = 244/252 (96.83%), Query Frame = 0


Query: 1   MEENKQRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 60
           ME+NKQRKWKRKG  SSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR
Sbjct: 7   MEDNKQRKWKRKGTPSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 66

Query: 61  LWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 120
           LWLRVERSIKDLSE GVFPT++AAVAAARPGDTILIATGGVHS SNIQITKPLCLIGGGE
Sbjct: 67  LWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQITKPLCLIGGGE 126

Query: 121 LPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 180
           LPEETTLFC+RGSESA EFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD
Sbjct: 127 LPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 186

Query: 181 YLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYART 240
           YLSCPIVCTASPDKL  SSVKGGY DGVSVSQTRIEGGAKA+LTSEDLAL+HVRVIYART
Sbjct: 187 YLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLALRHVRVIYART 246

Query: 241 ALFFWFDVEYKL 253
           ALFFWFDVE+KL
Sbjct: 247 ALFFWFDVEHKL 258

[Close]

BLAST of Tan0017488 vs. NCBI nr
Match: XP_038889674.1 (F-box protein SKIP5 [Benincasa hispida])

HSP 1 Score: 481.5 bits (1238), Expect = 4.5e-132
Identity = 236/252 (93.65%), Postives = 241/252 (95.63%), Query Frame = 0


Query: 1   MEENKQRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 60
           MEE+KQRKWKRKG S+SS  INNLDDGCLMHIFSFLSP+PDRYNTALVCHRWRYLACHPR
Sbjct: 16  MEESKQRKWKRKGTSTSSPSINNLDDGCLMHIFSFLSPMPDRYNTALVCHRWRYLACHPR 75

Query: 61  LWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 120
           LWLRVERSIKDLSEPGVFPTI+AAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE
Sbjct: 76  LWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 135

Query: 121 LPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 180
           LPEETTLFCTRGSESA EFL TSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD
Sbjct: 136 LPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 195

Query: 181 YLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYART 240
           YLSCPIVCTA PDKLLPSSV  GYT GVSVS TRIEGGAKAVLT +DLALQHVRVIYART
Sbjct: 196 YLSCPIVCTACPDKLLPSSVSRGYTHGVSVSHTRIEGGAKAVLTGDDLALQHVRVIYART 255

Query: 241 ALFFWFDVEYKL 253
           ALFFWFDVEYKL
Sbjct: 256 ALFFWFDVEYKL 267

[Close]

BLAST of Tan0017488 vs. ExPASy TrEMBL
Match: A0A0A0KRR7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 2.7e-135
Identity = 240/252 (95.24%), Postives = 244/252 (96.83%), Query Frame = 0


Query: 1   MEENKQRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 60
           MEENKQRKWKRKG SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR
Sbjct: 21  MEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 80

Query: 61  LWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 120
           LWLRVERSIKDLSEPGVFPTI+AAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE
Sbjct: 81  LWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 140

Query: 121 LPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 180
           LPEETTLFCTRGSESA EFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCESNPLD
Sbjct: 141 LPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPLD 200

Query: 181 YLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYART 240
           YLSCPIVCTASPDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVIYART
Sbjct: 201 YLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVIYART 260

Query: 241 ALFFWFDVEYKL 253
           ALFFWFDVEYKL
Sbjct: 261 ALFFWFDVEYKL 272

[Close]

BLAST of Tan0017488 vs. ExPASy TrEMBL
Match: A0A6J1CBW5 (F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.0e-134
Identity = 242/254 (95.28%), Postives = 247/254 (97.24%), Query Frame = 0


Query: 1   MEENKQRKWKRKGN--SSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH 60
           ++E KQRKWKRKG   SSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH
Sbjct: 10  VQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH 69

Query: 61  PRLWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG 120
           PRLWLRVERSIKDLSE GVFPTI+AAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG
Sbjct: 70  PRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG 129

Query: 121 GELPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNP 180
           GELPEETTLFCTRGSESA EFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNP
Sbjct: 130 GELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNP 189

Query: 181 LDYLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYA 240
           LDYLSCPIVC+A+PDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYA
Sbjct: 190 LDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYA 249

Query: 241 RTALFFWFDVEYKL 253
           RTALFFWFDVEY L
Sbjct: 250 RTALFFWFDVEYNL 263

[Close]

BLAST of Tan0017488 vs. ExPASy TrEMBL
Match: A0A5A7SZI1 (F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003020 PE=4 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 3.0e-134
Identity = 238/252 (94.44%), Postives = 243/252 (96.43%), Query Frame = 0


Query: 1   MEENKQRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 60
           MEENKQRKWKRKG SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR
Sbjct: 21  MEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 80

Query: 61  LWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 120
           LWLRVER+IKDLSEPGVFPTI+AAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE
Sbjct: 81  LWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 140

Query: 121 LPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 180
           LPEETTLFCTRGSESA EFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCESNPLD
Sbjct: 141 LPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPLD 200

Query: 181 YLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYART 240
           YLSCPIVCTASPDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVIYART
Sbjct: 201 YLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVIYART 260

Query: 241 ALFFWFDVEYKL 253
           AL FWFDVEYKL
Sbjct: 261 ALLFWFDVEYKL 272

[Close]

BLAST of Tan0017488 vs. ExPASy TrEMBL
Match: A0A1S3BG99 (F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 3.0e-134
Identity = 238/252 (94.44%), Postives = 243/252 (96.43%), Query Frame = 0


Query: 1   MEENKQRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 60
           MEENKQRKWKRKG SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR
Sbjct: 21  MEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 80

Query: 61  LWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 120
           LWLRVER+IKDLSEPGVFPTI+AAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE
Sbjct: 81  LWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 140

Query: 121 LPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 180
           LPEETTLFCTRGSESA EFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCESNPLD
Sbjct: 141 LPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPLD 200

Query: 181 YLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYART 240
           YLSCPIVCTASPDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVIYART
Sbjct: 201 YLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVIYART 260

Query: 241 ALFFWFDVEYKL 253
           AL FWFDVEYKL
Sbjct: 261 ALLFWFDVEYKL 272

[Close]

BLAST of Tan0017488 vs. ExPASy TrEMBL
Match: A0A6J1HPC3 (F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.0e-134
Identity = 237/252 (94.05%), Postives = 244/252 (96.83%), Query Frame = 0


Query: 1   MEENKQRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 60
           ME+NKQRKWKRKG  SSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR
Sbjct: 7   MEDNKQRKWKRKGTPSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPR 66

Query: 61  LWLRVERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGE 120
           LWLRVERSIKDLSE GVFPT++AAVAAARPGDTILIATGGVHS SNIQITKPLCLIGGGE
Sbjct: 67  LWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQITKPLCLIGGGE 126

Query: 121 LPEETTLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 180
           LPEETTLFC+RGSESA EFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD
Sbjct: 127 LPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLD 186

Query: 181 YLSCPIVCTASPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYART 240
           YLSCPIVCTASPDKL  SSVKGGY DGVSVSQTRIEGGAKA+LTSEDLAL+HVRVIYART
Sbjct: 187 YLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLALRHVRVIYART 246

Query: 241 ALFFWFDVEYKL 253
           ALFFWFDVE+KL
Sbjct: 247 ALFFWFDVEHKL 258

[Close]

BLAST of Tan0017488 vs. TAIR 10
Match: AT3G54480.1 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 345.5 bits (885), Expect = 3.6e-95
Identity = 170/255 (66.67%), Postives = 200/255 (78.43%), Query Frame = 0


Query: 6   QRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 65
           + K K++    S   +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 66  ERSIKDLSEPGVFPTIDAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEET 125
           +R +KDLS+PGVF  I++AV+AARPGDTILI  GG +  SNIQI KPLCL+GGGE+P+ET
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDET 139

Query: 126 TLFCTRGSESAFEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCP 185
           TL C RGS+SA E L T KL+NLTVKAELGCCLLHR GRL IDGCVLQCE+NPLD+LSCP
Sbjct: 140 TLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCP 199

Query: 186 IVCTASPDKL--------LPSSVKGGY-TDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 245
           IV TA  + +        +  +V G    + V+V QTRIEGGAKAV T  DL LQ VRV+
Sbjct: 200 IVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVM 259

Query: 246 YARTALFFWFDVEYK 252
           Y++  L+FWFDV+Y+
Sbjct: 260 YSKAYLYFWFDVDYE 274

[Close]

BLAST of Tan0017488 vs. TAIR 10
Match: AT3G54480.2 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 135.6 bits (340), Expect = 5.6e-32
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 6   QRKWKRKGNSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 65
           + K K++    S   +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 66  ERSIKDLSEPGVFPTIDAAVAAAR 90
           +R +KDLS+PGVF  I++AV+AAR
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAAR 103

The following BLAST results are available for this feature:

BLAST of Tan0017488 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94FT2	5.0e-94	66.67	F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1	[more]

BLAST of Tan0017488 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142419.1	5.7e-135	95.24	F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protei...	[more]
XP_022139176.1	2.1e-134	95.28	F-box protein SKIP5 [Momordica charantia]	[more]
XP_008446937.1	6.3e-134	94.44	PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 ...	[more]
XP_022966937.1	8.2e-134	94.05	F-box protein SKIP5 isoform X1 [Cucurbita maxima]	[more]
XP_038889674.1	4.5e-132	93.65	F-box protein SKIP5 [Benincasa hispida]	[more]

BLAST of Tan0017488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRR7	2.7e-135	95.24	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 ...	[more]
A0A6J1CBW5	1.0e-134	95.28	F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1	[more]
A0A5A7SZI1	3.0e-134	94.44	F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G...	[more]
A0A1S3BG99	3.0e-134	94.44	F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1	[more]
A0A6J1HPC3	4.0e-134	94.05	F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 ...	[more]

BLAST of Tan0017488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54480.1	3.6e-95	66.67	SKP1/ASK-interacting protein 5	[more]
AT3G54480.2	5.6e-32	72.62	SKP1/ASK-interacting protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 15..43 e-value: 1.4E-5 score: 26.8
None	No IPR available	PANTHER	PTHR14695:SF4	PROTEIN NESSUN DORMA	coord: 16..49 coord: 50..232
IPR045140	SHC SH2 domain-binding protein 1-like	PANTHER	PTHR14695	SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED	coord: 16..49 coord: 50..232
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 20..56
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 56..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017488.1	Tan0017488.1	mRNA
Tan0017488.2	Tan0017488.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding