Tan0017472 (gene) Snake gourd v1

Overview


Name	Tan0017472
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transposase
Location	LG01: 95725120 .. 95725749 (-)
RNA-Seq Expression	Tan0017472
Synteny	Tan0017472

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGTGGTAGTGTCCGTGATCGCTTGGGATCGTATTGCTGAGATCGTGATCGTGGGAGAAGGAGCATTCAAAGAAAAGTTCTACCAAGGTATCATTCTTGTTGTTGTCCATCTTGCTATTGTATGCTTAATCTAGTTAGATTTGTTCTTGAATGTAATCCATGTAATGAAATTAAAAACGCGCGATTAACAATCGCTTTCGCTGCGGGATTCGATTCCCTTCAGGCTCGAACAAATAAAAAAGGAGAATATGTCGATGAGAATGTCCAGGAAGTAGCCACACGAATAGTAAGAAAAATTTTATATGAATGTGTATGTTAAGTTGATGGTCCATTAACTATCTAAACTAATAGTATTTCCTAATTTTTTTTAGGACGAGATCTCGAAGAATGTGGGTTCACTGTCCAACATGTGCCTCTCTCCAAATGATATTTTAACTCAAGCTTTGGGCACACTAGAATACAATGCATGTGTACGTGGGGTTAGTGGCTTCGTCACACCTACAACTTACTTCCACACGGTGAAACATAGTTCGACACAAGATGAGAATAAAAACAAAGAAATTGTTCATGATAATGAAGCACTTCATCGGCGTGTTAGAGAATTGGAAGATCAAATTCAGAAGACATGA

mRNA sequence

CCGGTGGTAGTGTCCGTGATCGCTTGGGATCGTATTGCTGAGATCGTGATCGTGGGAGAAGGAGCATTCAAAGAAAAGTTCTACCAAGGTATCATTCTTGTTGTTGTCCATCTTGCTATTGTATGCTTAATCTAGTTAGATTTGTTCTTGAATGTAATCCATGTAATGAAATTAAAAACGCGCGATTAACAATCGCTTTCGCTGCGGGATTCGATTCCCTTCAGGCTCGAACAAATAAAAAAGGAGAATATGTCGATGAGAATGTCCAGGAAGTAGCCACACGAATAGACGAGATCTCGAAGAATGTGGGTTCACTGTCCAACATGTGCCTCTCTCCAAATGATATTTTAACTCAAGCTTTGGGCACACTAGAATACAATGCATGTGTACGTGGGGTTAGTGGCTTCGTCACACCTACAACTTACTTCCACACGGTGAAACATAGTTCGACACAAGATGAGAATAAAAACAAAGAAATTGTTCATGATAATGAAGCACTTCATCGGCGTGTTAGAGAATTGGAAGATCAAATTCAGAAGACATGA

Coding sequence (CDS)

ATGCTTAATCTAGTTAGATTTGTTCTTGAATGTAATCCATGTAATGAAATTAAAAACGCGCGATTAACAATCGCTTTCGCTGCGGGATTCGATTCCCTTCAGGCTCGAACAAATAAAAAAGGAGAATATGTCGATGAGAATGTCCAGGAAGTAGCCACACGAATAGACGAGATCTCGAAGAATGTGGGTTCACTGTCCAACATGTGCCTCTCTCCAAATGATATTTTAACTCAAGCTTTGGGCACACTAGAATACAATGCATGTGTACGTGGGGTTAGTGGCTTCGTCACACCTACAACTTACTTCCACACGGTGAAACATAGTTCGACACAAGATGAGAATAAAAACAAAGAAATTGTTCATGATAATGAAGCACTTCATCGGCGTGTTAGAGAATTGGAAGATCAAATTCAGAAGACATGA

Protein sequence

MLNLVRFVLECNPCNEIKNARLTIAFAAGFDSLQARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVSGFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQIQKT

Homology

[Close]

BLAST of Tan0017472 vs. NCBI nr
Match: KAA0060131.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NK+G+Y ++++Q+V  +IDEIS N  S S      ND+LTQALGT E+NA VRGV 
Sbjct: 218 KARVNKQGQYDNDDIQQVVHKIDEISMNTDSSSVNRHCSNDVLTQALGTKEHNARVRGVG 277

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQIQ 139
           G+VTPTTYFH+VK +S  D N    I+ +NE L RRV ELE QI+
Sbjct: 278 GYVTPTTYFHSVKKTSKDDAN----ILVENEELRRRVSELEAQIR 318

[Close]

BLAST of Tan0017472 vs. NCBI nr
Match: XP_031737547.1 (uncharacterized protein LOC116402437 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-18
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NKKGEY +++VQ+V  +IDEIS N  S S    S ND+LTQALGT E++  VRGV 
Sbjct: 4   KARVNKKGEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTQALGTKEHHGRVRGVG 63

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQI 138
           G+VTPT YFH+VK +S +++    EI+ +N+ L RRV ELE  I
Sbjct: 64  GYVTPTNYFHSVKKTSKRED----EIILENKELRRRVSELEAHI 103

[Close]

BLAST of Tan0017472 vs. NCBI nr
Match: XP_031739205.1 (uncharacterized protein LOC116402905 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-18
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NKKGEY +++VQ+V  +IDEIS N  S S    S ND+LTQALGT E++  VRGV 
Sbjct: 4   KARVNKKGEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTQALGTKEHHGRVRGVG 63

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQI 138
           G+VTPT YFH+VK +S +++    EI+ +N+ L RRV ELE  I
Sbjct: 64  GYVTPTNYFHSVKKTSKRED----EIILENKELRRRVSELEAHI 103

[Close]

BLAST of Tan0017472 vs. NCBI nr
Match: XP_031741716.1 (uncharacterized protein LOC116403912 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-18
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NKKGEY +++VQ+V  +IDEIS N  S S    S ND+LTQALGT E++  VRGV 
Sbjct: 4   KARVNKKGEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTQALGTKEHHGRVRGVD 63

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQI 138
           G+VTPT YFH+VK +S +++    EI+ +N+ L RRV ELE  I
Sbjct: 64  GYVTPTNYFHSVKKTSKRED----EIILENKELRRRVSELEAHI 103

[Close]

BLAST of Tan0017472 vs. NCBI nr
Match: XP_031741710.1 (uncharacterized protein LOC116403905 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 5.4e-18
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NKKGEY +++VQ+V  +IDEIS N  S S    S ND+LTQALGT E+N  V GV 
Sbjct: 87  KARVNKKGEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTQALGTKEHNGRVCGVG 146

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQI 138
           G+VTPT YFH+VK +S +++   + I+ +NE L RRV ELE  I
Sbjct: 147 GYVTPTNYFHSVKKTSKRED---ENIILENEELRRRVSELEAHI 187

[Close]

BLAST of Tan0017472 vs. ExPASy TrEMBL
Match: A0A5A7V2Z2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G00510 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.2e-19
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NK+G+Y ++++Q+V  +IDEIS N  S S      ND+LTQALGT E+NA VRGV 
Sbjct: 218 KARVNKQGQYDNDDIQQVVHKIDEISMNTDSSSVNRHCSNDVLTQALGTKEHNARVRGVG 277

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQIQ 139
           G+VTPTTYFH+VK +S  D N    I+ +NE L RRV ELE QI+
Sbjct: 278 GYVTPTTYFHSVKKTSKDDAN----ILVENEELRRRVSELEAQIR 318

[Close]

BLAST of Tan0017472 vs. ExPASy TrEMBL
Match: A0A5A7UXT2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold409G00100 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NK+G+Y ++++Q+V  +IDEIS N  S S      ND+LTQALGT E+N  VRGV 
Sbjct: 187 KARVNKQGQYDNDDIQQVVHKIDEISMNTDSSSVNRHCSNDVLTQALGTKEHNGRVRGVG 246

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQIQ 139
           G+VTPTTYFH+VK +S  + N    I+ +NE L RRV ELE QI+
Sbjct: 247 GYVTPTTYFHSVKKTSKDEAN----ILVENEELRRRVSELEAQIR 287

[Close]

BLAST of Tan0017472 vs. ExPASy TrEMBL
Match: A0A5A7V0G8 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00370 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NK+G+Y ++++Q+V  +IDEIS N  S S      ND+LTQALGT E+N  VRGV 
Sbjct: 218 KARVNKQGQYDNDDIQQVVHKIDEISMNTDSSSVNRHCSNDVLTQALGTKEHNGRVRGVG 277

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQIQ 139
           G+VTPTTYFH+VK +S  + N    I+ +NE L RRV ELE QI+
Sbjct: 278 GYVTPTTYFHSVKKTSKDEAN----ILVENEELRRRVSELEAQIR 318

[Close]

BLAST of Tan0017472 vs. ExPASy TrEMBL
Match: A0A5A7TCA1 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00770 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NK+G+Y ++++Q+V  +IDEIS N  S S      ND+LTQALGT E+N  VRGV 
Sbjct: 19  KARVNKQGQYDNDDIQQVVHKIDEISMNTDSSSVNRHCSNDVLTQALGTKEHNGRVRGVG 78

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQIQ 139
           G+VTPTTYFH+VK +S  + N    I+ +NE L RRV ELE QI+
Sbjct: 79  GYVTPTTYFHSVKKTSKDEAN----ILVENEELRRRVSELEAQIR 119

[Close]

BLAST of Tan0017472 vs. ExPASy TrEMBL
Match: A0A5A7TDG0 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00380 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.9e-18
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 34  QARTNKKGEYVDENVQEVATRIDEISKNVGSLSNMCLSPNDILTQALGTLEYNACVRGVS 93
           +AR NK+G+Y ++++Q+V  +IDEIS N+ S S      ND+LTQALGT E+N  VRGV 
Sbjct: 217 KARVNKQGQYDNDDIQQVVHKIDEISMNIDSSSVNRHCSNDVLTQALGTKEHNGRVRGVG 276

Query: 94  GFVTPTTYFHTVKHSSTQDENKNKEIVHDNEALHRRVRELEDQIQ 139
           G+VTP TYFH+VK +S  + N    I+ +NE L RRV ELE QI+
Sbjct: 277 GYVTPITYFHSVKKTSKDEAN----ILVENEELRRRVSELEAQIR 317

The following BLAST results are available for this feature:

BLAST of Tan0017472 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017472 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060131.1	1.1e-18	55.24	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]
XP_031737547.1	3.1e-18	53.85	uncharacterized protein LOC116402437 [Cucumis sativus]	[more]
XP_031739205.1	3.1e-18	53.85	uncharacterized protein LOC116402905 [Cucumis sativus]	[more]
XP_031741716.1	3.1e-18	53.85	uncharacterized protein LOC116403912 [Cucumis sativus]	[more]
XP_031741710.1	5.4e-18	53.85	uncharacterized protein LOC116403905 [Cucumis sativus]	[more]

BLAST of Tan0017472 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2Z2	5.2e-19	55.24	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UXT2	4.4e-18	53.33	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V0G8	4.4e-18	53.33	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TCA1	4.4e-18	53.33	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TDG0	9.9e-18	52.38	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Tan0017472 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017472.1	Tan0017472.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0003824	catalytic activity