Tan0017426 (gene) Snake gourd v1

Overview


Name	Tan0017426
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG11: 15706559 .. 15706957 (+)
RNA-Seq Expression	Tan0017426
Synteny	Tan0017426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTATACCGAAGGGCAAATACCGGTATCGTGGTGTCGATAACGATTACACTTGAAGAATTTAGGTCTGAGGTTTACGATGTTAAATCAATTAACGAGTACGAATATGAAATTGAAATGAAAATTAAATTCAATACGGATTATTTCTCACCACCAATGTACATAAGTAACGATCAAGATGTTCGATTTTTTATGAACCATCCAGACGTGACAAGAGTTCAAGTATGGATAACAAATGTACAAAATAAGTGCACGAACGACGGGTCGAAGGAAGATGATGATTCTGGTCAAGACCCAGAATACGAACCTGGGCAGGACGATGAATATGATACACATGAACGAGTTGAAGAGGATGTAATGGTAATAGAAAGCGATGAGTATGTTGAAGATGAGTAG

mRNA sequence

ATGGACTTATACCGAAGGGCAAATACCGGTATCGTGGTGTCGATAACGATTACACTTGAAGAATTTAGGTCTGAGGTTTACGATGTTAAATCAATTAACGAGTACGAATATGAAATTGAAATGAAAATTAAATTCAATACGGATTATTTCTCACCACCAATGTACATAAGTAACGATCAAGATGTTCGATTTTTTATGAACCATCCAGACGTGACAAGAGTTCAAGTATGGATAACAAATGTACAAAATAAGTGCACGAACGACGGGTCGAAGGAAGATGATGATTCTGGTCAAGACCCAGAATACGAACCTGGGCAGGACGATGAATATGATACACATGAACGAGTTGAAGAGGATGTAATGGTAATAGAAAGCGATGAGTATGTTGAAGATGAGTAG

Coding sequence (CDS)

ATGGACTTATACCGAAGGGCAAATACCGGTATCGTGGTGTCGATAACGATTACACTTGAAGAATTTAGGTCTGAGGTTTACGATGTTAAATCAATTAACGAGTACGAATATGAAATTGAAATGAAAATTAAATTCAATACGGATTATTTCTCACCACCAATGTACATAAGTAACGATCAAGATGTTCGATTTTTTATGAACCATCCAGACGTGACAAGAGTTCAAGTATGGATAACAAATGTACAAAATAAGTGCACGAACGACGGGTCGAAGGAAGATGATGATTCTGGTCAAGACCCAGAATACGAACCTGGGCAGGACGATGAATATGATACACATGAACGAGTTGAAGAGGATGTAATGGTAATAGAAAGCGATGAGTATGTTGAAGATGAGTAG

Protein sequence

MDLYRRANTGIVVSITITLEEFRSEVYDVKSINEYEYEIEMKIKFNTDYFSPPMYISNDQDVRFFMNHPDVTRVQVWITNVQNKCTNDGSKEDDDSGQDPEYEPGQDDEYDTHERVEEDVMVIESDEYVEDE

Homology

[Close]

BLAST of Tan0017426 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 35/95 (36.84%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 9   TGIVVSITITLEEFRSEVYDVKSINEYEYEIEMKIKFNTDYFSPPMYISNDQDVRFFMNH 68
           TGIVV IT+  +EF++ +Y V ++N  E+++ M++K+  D+ +PP+YI ND DV  F+  
Sbjct: 146 TGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMRVKYKLDFEAPPLYIQNDDDVYIFLCL 205

Query: 69  PDVTRVQVWITNVQNKCTNDGSKEDDDSGQDPEYE 104
            D++RVQ+++T +++    +     D  G D +YE
Sbjct: 206 DDLSRVQLYVT-LKSYHDENVKMIHDGIGVDRQYE 239

[Close]

BLAST of Tan0017426 vs. NCBI nr
Match: XP_038891939.1 (uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-04
Identity = 32/109 (29.36%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 10  GIVVSITITLEEFRSEVYDVKSINEYEYEIEMKIKFNTDYFSPPMYISNDQDVRFFMNHP 69
           GI+V +++  EE +S +Y V +++  E+++ +K+K+  +Y +PP YI ND  +RF +   
Sbjct: 63  GILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEAPPQYIRNDDGIRFLLFRE 122

Query: 70  DVTRVQVWITNVQNKCTN----DGSKEDDDSGQDPEYEPG---QDDEYD 112
           D++R+Q+ +T   N   N      +   DD+  + +Y+     + +EYD
Sbjct: 123 DLSRLQLSVTLKSNVDENIRMGFRNVSYDDTTMERQYKESYQYRQEEYD 171

[Close]

BLAST of Tan0017426 vs. NCBI nr
Match: XP_038891938.1 (uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-04
Identity = 32/109 (29.36%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 10  GIVVSITITLEEFRSEVYDVKSINEYEYEIEMKIKFNTDYFSPPMYISNDQDVRFFMNHP 69
           GI+V +++  EE +S +Y V +++  E+++ +K+K+  +Y +PP YI ND  +RF +   
Sbjct: 94  GILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEAPPQYIRNDDGIRFLLFRE 153

Query: 70  DVTRVQVWITNVQNKCTN----DGSKEDDDSGQDPEYEPG---QDDEYD 112
           D++R+Q+ +T   N   N      +   DD+  + +Y+     + +EYD
Sbjct: 154 DLSRLQLSVTLKSNVDENIRMGFRNVSYDDTTMERQYKESYQYRQEEYD 202

The following BLAST results are available for this feature:

BLAST of Tan0017426 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017426 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888098.1	1.1e-07	36.84	uncharacterized protein LOC120078004 [Benincasa hispida]	[more]
XP_038891939.1	5.4e-04	29.36	uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida]	[more]
XP_038891938.1	5.4e-04	29.36	uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida]	[more]

BLAST of Tan0017426 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Tan0017426 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017426.1	Tan0017426.1	mRNA