Tan0017370 (gene) Snake gourd v1

Overview


Name	Tan0017370
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Mediator of RNA polymerase II transcription subunit 13, putative
Location	LG05: 69289018 .. 69289802 (+)
RNA-Seq Expression	Tan0017370
Synteny	Tan0017370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGCCCCTGCTGACGACATCAAAATGGCTATATAAATTTAACCTTAAATCGATGATCTAAATTAGTCAGCATAAATTAATGAGCTAAATATAGAGACCTAGAGAGGAGAGGACACGAGTAAAGAGTTTAGAATTAAAAGCAAATAAAAAATCAGAAGCCAAAGACTGGACAGTTTATTTGGGTGGCCGATTATTATACTGAGAAAATGTACGGTCCACAGTGTAAAGTACCAAAATCAAAACCCTTTTCTCTCGGACTCAAATATGAGGCTCATTCAATTTCTTAATTCACACCACCATGAAGAAGAAACCAGAGCTTGAAGACGACGACGATCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCAAAGCCACAGCGGCAGTTCAAAGCCGGCAACTGAATTCGACGCCCATCGCCGCCGCAATTGCACAGGCAATCCATCTCGGTTCAAGATTGAGGCCATGCGGACCCGGTGTTCCACCGGCGACCGGCGATGGGACTTCGCCCAGTCGCTGTGGGACTCGTATGAGATCGTGACGGTGTCGAAGTGCCTGGAGAGGGGGCTGGTGCTCGACGGCGACGACCGGATTCAGCGGAAACGGCGGGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGGGCTTCTTCGAGGAGATTCAATTTCAATTAGGCATTCGAAATTCGAACCCAATGTATGAAATTTGATTTCTTGATAAATCATTTTGAGTGATTGGGATTGGGTTTGGGAACGCGATTCCATGGGTTTTGATTTTTC

mRNA sequence

GTCCGCCCCTGCTGACGACATCAAAATGGCTATATAAATTTAACCTTAAATCGATGATCTAAATTAGTCAGCATAAATTAATGAGCTAAATATAGAGACCTAGAGAGGAGAGGACACGAGTAAAGAGTTTAGAATTAAAAGCAAATAAAAAATCAGAAGCCAAAGACTGGACAGTTTATTTGGGTGGCCGATTATTATACTGAGAAAATGTACGGTCCACAGTGTAAAGTACCAAAATCAAAACCCTTTTCTCTCGGACTCAAATATGAGGCTCATTCAATTTCTTAATTCACACCACCATGAAGAAGAAACCAGAGCTTGAAGACGACGACGATCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCAAAGCCACAGCGGCAGTTCAAAGCCGGCAACTGAATTCGACGCCCATCGCCGCCGCAATTGCACAGGCAATCCATCTCGGTTCAAGATTGAGGCCATGCGGACCCGGTGTTCCACCGGCGACCGGCGATGGGACTTCGCCCAGTCGCTGTGGGACTCGTATGAGATCGTGACGGTGTCGAAGTGCCTGGAGAGGGGGCTGGTGCTCGACGGCGACGACCGGATTCAGCGGAAACGGCGGGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGGGCTTCTTCGAGGAGATTCAATTTCAATTAGGCATTCGAAATTCGAACCCAATGTATGAAATTTGATTTCTTGATAAATCATTTTGAGTGATTGGGATTGGGTTTGGGAACGCGATTCCATGGGTTTTGATTTTTC

Coding sequence (CDS)

ATGAAGAAGAAACCAGAGCTTGAAGACGACGACGATCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCAAAGCCACAGCGGCAGTTCAAAGCCGGCAACTGAATTCGACGCCCATCGCCGCCGCAATTGCACAGGCAATCCATCTCGGTTCAAGATTGAGGCCATGCGGACCCGGTGTTCCACCGGCGACCGGCGATGGGACTTCGCCCAGTCGCTGTGGGACTCGTATGAGATCGTGACGGTGTCGAAGTGCCTGGAGAGGGGGCTGGTGCTCGACGGCGACGACCGGATTCAGCGGAAACGGCGGGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGGGCTTCTTCGAGGAGATTCAATTTCAATTAG

Protein sequence

MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRTRCSTGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGDDRIQRKRRESCNSLRNLFNRASSRRFNFN

Homology

[Close]

BLAST of Tan0017370 vs. NCBI nr
Match: XP_038894267.1 (uncharacterized protein LOC120082919 [Benincasa hispida])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 102/135 (75.56%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MKKKPELEDDDD-RHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMR 60
           MKKKPEL+DDDD RHLEILKAVAQAW SH+GSSKPA+EFDAH RRN    PSRFK+EA+R
Sbjct: 1   MKKKPELQDDDDHRHLEILKAVAQAWHSHTGSSKPASEFDAH-RRNSRPTPSRFKLEAIR 60

Query: 61  TRCSTGDRRWDFAQSLWDSYEIVTVSKCLERGLVLD---------GDDRIQRKRRESCNS 120
           TR S  DRRWDF QSLWDSYEIVTVSK LE GLVLD         G  R QRK+RESCNS
Sbjct: 61  TRSSVSDRRWDFGQSLWDSYEIVTVSKKLEAGLVLDRDGFREVDGGGGRSQRKKRESCNS 120

Query: 121 LRNLFNRASSRRFNF 126
           LRNLF+RASSRRFN+
Sbjct: 121 LRNLFSRASSRRFNY 134

[Close]

BLAST of Tan0017370 vs. NCBI nr
Match: XP_011651756.1 (uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-43
Identity = 104/137 (75.91%), Postives = 111/137 (81.02%), Query Frame = 0


Query: 1   MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAM 60
           MKKKP+L    DDDRHLEILKAVAQAW SH+G+SKPA+EFDAH RRN    PSRFKIEA+
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAH-RRNSRPMPSRFKIEAI 60

Query: 61  RTRCST-GDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD---------DRIQRKRRESC 120
           R+R ST  DRRWDFAQSLWDSYEIVTVSK LE GLVLDGD          R QRKRRESC
Sbjct: 61  RSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESC 120

Query: 121 NSLRNLFNRASSRRFNF 126
           NSLRNLFNRASSRRFN+
Sbjct: 121 NSLRNLFNRASSRRFNY 136

[Close]

BLAST of Tan0017370 vs. NCBI nr
Match: XP_022137185.1 (uncharacterized protein LOC111008716 [Momordica charantia])

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 102/138 (73.91%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRT 60
           MKKKPE+E DD RHLEILKAVAQAW SH+GSSKPA EFDAH RRNC G PSRFK+EA+RT
Sbjct: 1   MKKKPEVE-DDHRHLEILKAVAQAWHSHTGSSKPANEFDAH-RRNCRGTPSRFKLEAIRT 60

Query: 61  RCSTGDR----RWDFAQSLWDSYEIVTVSKCLERGLVLDGD----------DRIQRKRRE 120
           R S GDR    RWDF+QSLWDSYEIVTVSK LE GLVLDGD           R+QRK  E
Sbjct: 61  RSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTE 120

Query: 121 SCNSLRNLFNRASSRRFN 125
           S NSLRNLFNR SSRRFN
Sbjct: 121 SNNSLRNLFNRVSSRRFN 136

[Close]

BLAST of Tan0017370 vs. NCBI nr
Match: XP_008438871.1 (PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 uncharacterized protein E6C27_scaffold80G001040 [Cucumis melo var. makuwa] >TYJ99185.1 uncharacterized protein E5676_scaffold248G003950 [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-41
Identity = 99/137 (72.26%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 1   MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAM 60
           MKKKP+L    D DRHLEILKAVAQAW +H+G+SKPA+EFDAH RRN    PSRFK+EA+
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAH-RRNSRPTPSRFKLEAI 60

Query: 61  RTRC-STGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD---------DRIQRKRRESC 120
           R+R  S  +RRWDFAQSLWDSYEIVTVSK LE GLVLDGD          R QRKRRESC
Sbjct: 61  RSRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESC 120

Query: 121 NSLRNLFNRASSRRFNF 126
           NSLRNLFNRASSRRFN+
Sbjct: 121 NSLRNLFNRASSRRFNY 136

[Close]

BLAST of Tan0017370 vs. NCBI nr
Match: KAE8652596.1 (hypothetical protein Csa_014373 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 98/128 (76.56%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 1   MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAM 60
           MKKKP+L    DDDRHLEILKAVAQAW SH+G+SKPA+EFDAH RRN    PSRFKIEA+
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAH-RRNSRPMPSRFKIEAI 60

Query: 61  RTRCST-GDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGDDRIQRKRRESCNSLRNLFNR 120
           R+R ST  DRRWDFAQSLWDSYEIVTVSK LE      G  R QRKRRESCNSLRNLFNR
Sbjct: 61  RSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLE-----SGGGRSQRKRRESCNSLRNLFNR 120

Query: 121 ASSRRFNF 126
           ASSRRFN+
Sbjct: 121 ASSRRFNY 122

[Close]

BLAST of Tan0017370 vs. ExPASy TrEMBL
Match: A0A0A0LTM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.2e-44
Identity = 104/137 (75.91%), Postives = 111/137 (81.02%), Query Frame = 0


Query: 1   MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAM 60
           MKKKP+L    DDDRHLEILKAVAQAW SH+G+SKPA+EFDAH RRN    PSRFKIEA+
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAH-RRNSRPMPSRFKIEAI 60

Query: 61  RTRCST-GDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD---------DRIQRKRRESC 120
           R+R ST  DRRWDFAQSLWDSYEIVTVSK LE GLVLDGD          R QRKRRESC
Sbjct: 61  RSRTSTVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESC 120

Query: 121 NSLRNLFNRASSRRFNF 126
           NSLRNLFNRASSRRFN+
Sbjct: 121 NSLRNLFNRASSRRFNY 136

[Close]

BLAST of Tan0017370 vs. ExPASy TrEMBL
Match: A0A6J1C5Z6 (uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008716 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.1e-43
Identity = 102/138 (73.91%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRT 60
           MKKKPE+E DD RHLEILKAVAQAW SH+GSSKPA EFDAH RRNC G PSRFK+EA+RT
Sbjct: 1   MKKKPEVE-DDHRHLEILKAVAQAWHSHTGSSKPANEFDAH-RRNCRGTPSRFKLEAIRT 60

Query: 61  RCSTGDR----RWDFAQSLWDSYEIVTVSKCLERGLVLDGD----------DRIQRKRRE 120
           R S GDR    RWDF+QSLWDSYEIVTVSK LE GLVLDGD           R+QRK  E
Sbjct: 61  RSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTE 120

Query: 121 SCNSLRNLFNRASSRRFN 125
           S NSLRNLFNR SSRRFN
Sbjct: 121 SNNSLRNLFNRVSSRRFN 136

[Close]

BLAST of Tan0017370 vs. ExPASy TrEMBL
Match: A0A5A7UNW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003950 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 99/137 (72.26%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 1   MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAM 60
           MKKKP+L    D DRHLEILKAVAQAW +H+G+SKPA+EFDAH RRN    PSRFK+EA+
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAH-RRNSRPTPSRFKLEAI 60

Query: 61  RTRC-STGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD---------DRIQRKRRESC 120
           R+R  S  +RRWDFAQSLWDSYEIVTVSK LE GLVLDGD          R QRKRRESC
Sbjct: 61  RSRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESC 120

Query: 121 NSLRNLFNRASSRRFNF 126
           NSLRNLFNRASSRRFN+
Sbjct: 121 NSLRNLFNRASSRRFNY 136

[Close]

BLAST of Tan0017370 vs. ExPASy TrEMBL
Match: A0A1S3AX17 (uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 99/137 (72.26%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 1   MKKKPELED--DDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAM 60
           MKKKP+L    D DRHLEILKAVAQAW +H+G+SKPA+EFDAH RRN    PSRFK+EA+
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAH-RRNSRPTPSRFKLEAI 60

Query: 61  RTRC-STGDRRWDFAQSLWDSYEIVTVSKCLERGLVLDGD---------DRIQRKRRESC 120
           R+R  S  +RRWDFAQSLWDSYEIVTVSK LE GLVLDGD          R QRKRRESC
Sbjct: 61  RSRTNSVSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGGGRSQRKRRESC 120

Query: 121 NSLRNLFNRASSRRFNF 126
           NSLRNLFNRASSRRFN+
Sbjct: 121 NSLRNLFNRASSRRFNY 136

[Close]

BLAST of Tan0017370 vs. ExPASy TrEMBL
Match: A0A6J1E7J5 (uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC111431350 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.3e-40
Identity = 97/133 (72.93%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MKKKPELEDDDDRHLEILKAVAQAWQSHSGSSKPATEFDAHRRRNCTGNPSRFKIEAMRT 60
           MK KP +ED+D  HLEILKAVAQAWQSH+G+SKPA+EFDAH RRNC  NPSRFK+EA+R+
Sbjct: 24  MKNKPVVEDEDG-HLEILKAVAQAWQSHTGTSKPASEFDAH-RRNCRANPSRFKLEAIRS 83

Query: 61  RCSTGD-RRWDFAQSLWDSYEIVTVSKCLERGLVLDGD--------DRIQRKRRESCNSL 120
           R S G  RRWDF QSLWDSYEIV VSK LE GLVLDGD         R QRK+RESCNSL
Sbjct: 84  RSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRKQRESCNSL 143

Query: 121 RNLFNRASSRRFN 125
           RNLFNR +SRRFN
Sbjct: 144 RNLFNR-TSRRFN 153

[Close]

BLAST of Tan0017370 vs. TAIR 10
Match: AT4G24700.1 (unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-20
Identity = 64/143 (44.76%), Postives = 88/143 (61.54%), Query Frame = 0


Query: 1   MKKKPELEDDDD-------RHLEILKAVAQAWQSHSGSSK-PATEFDAHRRRN-CTGNPS 60
           M+KK E +D+++       + LE++KA AQAW SHS +SK    EFDA R+     G  S
Sbjct: 1   MRKKREAKDENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKAS 60

Query: 61  RFKIEAMRTRCSTGDRRWDFAQSLWDSYEIVTVSKCLERGLVL----------DGDDRIQ 120
           RFK EA+  +       W+F QSLWD YEI++VSK LER L L          DG  +++
Sbjct: 61  RFKTEALSAKHHPSFLDWEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGLKKMK 120

Query: 121 RKR-RESCNSLRNLFNRASSRRF 124
           +K+ R+S NSLR+LF R+SS+RF
Sbjct: 121 KKKTRDSRNSLRSLFTRSSSKRF 143

The following BLAST results are available for this feature:

BLAST of Tan0017370 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894267.1	2.3e-44	75.56	uncharacterized protein LOC120082919 [Benincasa hispida]	[more]
XP_011651756.1	1.5e-43	75.91	uncharacterized protein LOC105434938 [Cucumis sativus]	[more]
XP_022137185.1	1.3e-42	73.91	uncharacterized protein LOC111008716 [Momordica charantia]	[more]
XP_008438871.1	3.1e-41	72.26	PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo] >KAA0055261.1 unc...	[more]
KAE8652596.1	2.0e-40	76.56	hypothetical protein Csa_014373 [Cucumis sativus]	[more]

BLAST of Tan0017370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTM3	7.2e-44	75.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1	[more]
A0A6J1C5Z6	6.1e-43	73.91	uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A5A7UNW1	1.5e-41	72.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AX17	1.5e-41	72.26	uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=...	[more]
A0A6J1E7J5	8.3e-40	72.93	uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC1114313...	[more]

BLAST of Tan0017370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24700.1	1.1e-20	44.76	unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34665:SF1	OS02G0595200 PROTEIN	coord: 1..124
None	No IPR available	PANTHER	PTHR34665	FAMILY NOT NAMED	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017370.1	Tan0017370.1	mRNA