Tan0017358 (gene) Snake gourd v1

Overview
NameTan0017358
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG03: 55489327 .. 55489956 (-)
RNA-Seq ExpressionTan0017358
SyntenyTan0017358
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAGAAAGAAAGAAGAAGAATTGAAAAACTAATTTTTAGGAACTCTCTTTTTTGTTTTGGAAATTAGGGTTTTTGGAGTTTGGGTGGCTGCCATGGCTGGCCTTCAATACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCTTCTTCTTCTTCTTCATCAGAAGCCATGATTAATAGGGCTACTGTAACCTTCAAAGCTGATCATATTGGTGAAGATCCCAAAAGTTTGATCCTTCAAAAGCCTGATAGATCACCATTGATTCTCAAGCATCAAATGAAGAAGAATCTTCATTTCTCTAAAGATTCAACTCTTGAATGATTCCTTCATAAAGGGCTCTCTTGAAAAAAAGAAAAAAAAAACTTCCTTTTTGGCTTTTGCTTTTTGATCCTTTTGTGTTTTTTTTTTTTTTTTGTTCTTGTGTGTGTGTGTTTTTTATGGGAGTATTATGTATGTATTTTGAGTTTGAATAATTTTCATCCTCTATAATAGTAAAGAGGATGTTTCATTTGCCATTTTGAAGGGGGCTTGAGAACTTTGTGTGTATATTATAGGGTTTTGGGTTTGCAATTGATGTATGATTATTGGTCTTTTAATGACCAATATTAGTAATATTAAAAAAA

mRNA sequence

AAAAAAAAGAAAGAAAGAAGAAGAATTGAAAAACTAATTTTTAGGAACTCTCTTTTTTGTTTTGGAAATTAGGGTTTTTGGAGTTTGGGTGGCTGCCATGGCTGGCCTTCAATACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCTTCTTCTTCTTCTTCATCAGAAGCCATGATTAATAGGGCTACTGTAACCTTCAAAGCTGATCATATTGGTGAAGATCCCAAAAGTTTGATCCTTCAAAAGCCTGATAGATCACCATTGATTCTCAAGCATCAAATGAAGAAGAATCTTCATTTCTCTAAAGATTCAACTCTTGAATGATTCCTTCATAAAGGGCTCTCTTGAAAAAAAGAAAAAAAAAACTTCCTTTTTGGCTTTTGCTTTTTGATCCTTTTGTGTTTTTTTTTTTTTTTTGTTCTTGTGTGTGTGTGTTTTTTATGGGAGTATTATGTATGTATTTTGAGTTTGAATAATTTTCATCCTCTATAATAGTAAAGAGGATGTTTCATTTGCCATTTTGAAGGGGGCTTGAGAACTTTGTGTGTATATTATAGGGTTTTGGGTTTGCAATTGATGTATGATTATTGGTCTTTTAATGACCAATATTAGTAATATTAAAAAAA

Coding sequence (CDS)

ATGGCTGGCCTTCAATACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCTTCTTCTTCTTCTTCATCAGAAGCCATGATTAATAGGGCTACTGTAACCTTCAAAGCTGATCATATTGGTGAAGATCCCAAAAGTTTGATCCTTCAAAAGCCTGATAGATCACCATTGATTCTCAAGCATCAAATGAAGAAGAATCTTCATTTCTCTAAAGATTCAACTCTTGAATGA

Protein sequence

MAGLQYNFFPTDLLYPKPSSSSSSEAMINRATVTFKADHIGEDPKSLILQKPDRSPLILKHQMKKNLHFSKDSTLE
Homology
[Close]
BLAST of Tan0017358 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_018873 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 5.1e-15
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSEAMINRATVTFKA------------DHIGEDPKS-- 60
          MAGLQYNFFPTDLLYPKPSSSSSS   INRA+VTFK             DH G++PKS  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDH-GDEPKSRL 60

Query: 61 LILQKPDRSPLILKHQMK 65
          +I QK DRSPLILKHQ+K
Sbjct: 61 MISQKVDRSPLILKHQIK 77

[Close]
BLAST of Tan0017358 vs. NCBI nr
Match: KAG6603410.1 (hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 9.7e-14
Identity = 50/82 (60.98%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSEA-------MINRATVTFK---------ADHIGEDP 60
          MAGLQYNFFPTDLLYPKPSSSSSS +        INRA+VTFK          D  G+  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGA 60

Query: 61 KSLILQKPDRSPLILKHQMKKN 67
          KSL +QK DRSPLILKHQ+K +
Sbjct: 61 KSLSIQKGDRSPLILKHQVKND 82

[Close]
BLAST of Tan0017358 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical protein E6C27_scaffold827G00560 [Cucumis melo var. makuwa] >TYK28218.1 hypothetical protein E5676_scaffold258G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 8.2e-13
Identity = 49/76 (64.47%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSEAMINRATVTFKA-----------DHIGEDPKSLIL 60
          MAGLQYNFFPTDLLYPKPSSSSSS   INRA+VTFK            DH  E    L  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

Query: 61 QK-PDRSPLILKHQMK 65
          QK  DRSPLILKHQ K
Sbjct: 61 QKVADRSPLILKHQSK 76

[Close]
BLAST of Tan0017358 vs. ExPASy TrEMBL
Match: A0A0A0KWJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSEAMINRATVTFKA------------DHIGEDPKS-- 60
          MAGLQYNFFPTDLLYPKPSSSSSS   INRA+VTFK             DH G++PKS  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDH-GDEPKSRL 60

Query: 61 LILQKPDRSPLILKHQMK 65
          +I QK DRSPLILKHQ+K
Sbjct: 61 MISQKVDRSPLILKHQIK 77

[Close]
BLAST of Tan0017358 vs. ExPASy TrEMBL
Match: A0A5A7V9D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00320 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 49/76 (64.47%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSEAMINRATVTFKA-----------DHIGEDPKSLIL 60
          MAGLQYNFFPTDLLYPKPSSSSSS   INRA+VTFK            DH  E    L  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

Query: 61 QK-PDRSPLILKHQMK 65
          QK  DRSPLILKHQ K
Sbjct: 61 QKVADRSPLILKHQSK 76

[Close]
BLAST of Tan0017358 vs. ExPASy TrEMBL
Match: E5GC02 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 49/76 (64.47%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSEAMINRATVTFKA-----------DHIGEDPKSLIL 60
          MAGLQYNFFPTDLLYPKPSSSSSS   INRA+VTFK            DH  E    L  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

Query: 61 QK-PDRSPLILKHQMK 65
          QK  DRSPLILKHQ K
Sbjct: 61 QKVADRSPLILKHQSK 76

The following BLAST results are available for this feature:
BLAST of Tan0017358 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0017358 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53975.15.1e-1566.67hypothetical protein Csa_018873 [Cucumis sativus][more]
KAG6603410.19.7e-1460.98hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sorori... [more]
ADN34001.18.2e-1364.47hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical prote... [more]
BLAST of Tan0017358 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWJ22.5e-1566.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1[more]
A0A5A7V9D34.0e-1364.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GC024.0e-1364.47Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
BLAST of Tan0017358 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0017358.1Tan0017358.1mRNA