Tan0017219 (gene) Snake gourd v1

Overview


Name	Tan0017219
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG07: 37592610 .. 37593433 (+)
RNA-Seq Expression	Tan0017219
Synteny	Tan0017219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCCGAATCTAGATCCTCATCAGGGGAAGAGAATGAGAATGATGAAAAAGAAGGGGAGGAGGTTGTGGAGACTGAAGATGAGGTAGTAGAATTTGATGATGATCGAATTCTAGTCTCCTCGGTTATGAGGAATAGAAGAAAAGAAGAAGATGGTGAGAGAAGGGAAAATAACAAACGCTCCCATTTTTTCCTAGAGGCCAACAACGAGGTCAACTCATGGCTCACCCATGCAAGCACGAACACCATCACCATCACCATCACAGAGAAACATTCAAAGAGGTTGATGTTAAAAGCATGCTGGAGATAGTAAAGGGAAGAGACATGATGCTTGAGAAAGGCTTCTTAGACATTGTTGGACAATTCCTTGAGTTTATCACCAAAGTCCTTACCCATTACAAGTGGAAAGAGCTTTGTGTCCATCCTCTCGCAGCCAAGATCAACTTAGTAAGAATGTTTTATAGGGGTATGGCATATGAAGAGGTGAGCATGTCGATCATTAGAGGCAAACTAGTGAGCTTCTCGATTGTGGACATCAAGATGATGTATAAACTAAATTTGACCATCCGTTCTTGGGGTAATGAGGTCATTAGAAGCCCCACTGAGAAGAAACGCAAGGAAGACCTCAACATTTTAACCCATAAGGTGACTAAATTGAGATTATCAACCACAAGGATCAGAACCTTGGTCCCAAGTGATACATTGGATGAGCCAGTCGTGTGGTTTCATATCATCAAGAATAGGATTATTCTCATGACTCATTATATTTCAAGAAAGGGTCATGCTCCTTTATTGTTTGTACAAGGCAATGGACTTAAATAA

mRNA sequence

ATGACACCCGAATCTAGATCCTCATCAGGGGAAGAGAATGAGAATGATGAAAAAGAAGGGGAGGAGGTTGTGGAGACTGAAGATGAGGTAGTAGAATTTGATGATGATCGAATTCTAGTCTCCTCGGTTATGAGGAATAGAAGAAAAGAAGAAGATGGCCAACAACGAGGTCAACTCATGGCTCACCCATGCAAGCACGAACACCATCACCATCACCATCACAGAGAAACATTCAAAGAGGTTGATGTTAAAAGCATGCTGGAGATAGTAAAGGGAAGAGACATGATGCTTGAGAAAGGCTTCTTAGACATTGTTGGACAATTCCTTGAGTTTATCACCAAAGTCCTTACCCATTACAAGTGGAAAGAGCTTTGTGTCCATCCTCTCGCAGCCAAGATCAACTTAGTAAGAATGTTTTATAGGGGTATGGCATATGAAGAGGTGAGCATGTCGATCATTAGAGGCAAACTAGTGAGCTTCTCGATTGTGGACATCAAGATGATGTATAAACTAAATTTGACCATCCGTTCTTGGGGTAATGAGGTCATTAGAAGCCCCACTGAGAAGAAACGCAAGGAAGACCTCAACATTTTAACCCATAAGGTGACTAAATTGAGATTATCAACCACAAGGATCAGAACCTTGGTCCCAAGTGATACATTGGATGAGCCAGTCGTGTGGTTTCATATCATCAAGAATAGGATTATTCTCATGACTCATTATATTTCAAGAAAGGGTCATGCTCCTTTATTGTTTGTACAAGGCAATGGACTTAAATAA

Coding sequence (CDS)

ATGACACCCGAATCTAGATCCTCATCAGGGGAAGAGAATGAGAATGATGAAAAAGAAGGGGAGGAGGTTGTGGAGACTGAAGATGAGGTAGTAGAATTTGATGATGATCGAATTCTAGTCTCCTCGGTTATGAGGAATAGAAGAAAAGAAGAAGATGGCCAACAACGAGGTCAACTCATGGCTCACCCATGCAAGCACGAACACCATCACCATCACCATCACAGAGAAACATTCAAAGAGGTTGATGTTAAAAGCATGCTGGAGATAGTAAAGGGAAGAGACATGATGCTTGAGAAAGGCTTCTTAGACATTGTTGGACAATTCCTTGAGTTTATCACCAAAGTCCTTACCCATTACAAGTGGAAAGAGCTTTGTGTCCATCCTCTCGCAGCCAAGATCAACTTAGTAAGAATGTTTTATAGGGGTATGGCATATGAAGAGGTGAGCATGTCGATCATTAGAGGCAAACTAGTGAGCTTCTCGATTGTGGACATCAAGATGATGTATAAACTAAATTTGACCATCCGTTCTTGGGGTAATGAGGTCATTAGAAGCCCCACTGAGAAGAAACGCAAGGAAGACCTCAACATTTTAACCCATAAGGTGACTAAATTGAGATTATCAACCACAAGGATCAGAACCTTGGTCCCAAGTGATACATTGGATGAGCCAGTCGTGTGGTTTCATATCATCAAGAATAGGATTATTCTCATGACTCATTATATTTCAAGAAAGGGTCATGCTCCTTTATTGTTTGTACAAGGCAATGGACTTAAATAA

Protein sequence

MTPESRSSSGEENENDEKEGEEVVETEDEVVEFDDDRILVSSVMRNRRKEEDGQQRGQLMAHPCKHEHHHHHHHRETFKEVDVKSMLEIVKGRDMMLEKGFLDIVGQFLEFITKVLTHYKWKELCVHPLAAKINLVRMFYRGMAYEEVSMSIIRGKLVSFSIVDIKMMYKLNLTIRSWGNEVIRSPTEKKRKEDLNILTHKVTKLRLSTTRIRTLVPSDTLDEPVVWFHIIKNRIILMTHYISRKGHAPLLFVQGNGLK

Homology

[Close]

BLAST of Tan0017219 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-09
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 94  DMMLEKGFLDIVGQFLEFITKVLTHYKWKEL--CVHPLAAKINLVRMFYRGMAYEEVSMS 153
           DMM+E GF+       +F + VL H  W+    C+  +   +  VR FY+G  +      
Sbjct: 175 DMMMEMGFIPASTPLPDFTSVVLEH-GWETFYQCLSIIIPTV--VRAFYKGRLHGTKDAV 234

Query: 154 IIRGKLVSFSIVDIKMMYKLNLTIRSWGNEVIRSPTEKKRKEDLNILTHKVTKLRLSTTR 213
           I++G +V FS  DI  +YK+     + GN++I  P E+K ++ L  LT   T+  +S   
Sbjct: 235 IMKGCIVPFSARDINELYKMKDIPDASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKG 294

Query: 214 IRTLVPSDTLDEPVVWFHIIKNRIILMTH 241
           I+TL  S  L E  +W +++K RII  +H
Sbjct: 295 IKTLASSKLLPEARLWVYLVKRRIIPTSH 320

[Close]

BLAST of Tan0017219 vs. NCBI nr
Match: XP_038898613.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-08
Identity = 41/147 (27.89%), Postives = 70/147 (47.62%), Query Frame = 0


Query: 94  DMMLEKGFLDIVGQFLEFITKVLTHYKWKELCVHPLAAKINLVRMFYRGMAYEEVSMSII 153
           DM++E GF        + IT ++  + W      P      +V  FYRG  +E       
Sbjct: 207 DMLIEMGFYPAPTPLPDLITSIIVEHGWDTFYQCPSIIVPQVVHDFYRGHLHENRDAVTF 266

Query: 154 RGKLVSFSIVDIKMMYKLNLTIRSWGNEVIRSPTEKKRKEDLNILTHKVTKLRLSTTRIR 213
           +G+ V FS  +I  +Y++     + GN++I  PTE+  +  L +L    T+  +S   IR
Sbjct: 267 KGETVYFSTKNINGLYQMRDNPDAPGNKIIDDPTEELMRNALKVLAQPGTRWTVSPKGIR 326

Query: 214 TLVPSDTLDEPVVWFHIIKNRIILMTH 241
           TL     L +  +W +++K ++I  TH
Sbjct: 327 TLESKSLLSKGRLWVYLVKKQLIPTTH 353

[Close]

BLAST of Tan0017219 vs. NCBI nr
Match: XP_038888747.1 (vicilin-like seed storage protein At2g18540 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-05
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 133 INLVRMFYRGMAYEEVSMSIIRGKLVSFSIVDIKMMYKLNLTIRSWGNEVIRSPTEKKRK 192
           + +VR FY G  ++     I++G  V FS  DI  +YK+   + + GN++I  P E   +
Sbjct: 199 MEMVRAFYHGRLHDTKDAVIMKGWTVPFSARDINELYKMKDILDAPGNKIIDDPEEAHME 258

Query: 193 EDLNILTHKVTKLRLSTTRIRTLVPSDTLDEPVVWFHIIKNRIILMTH 241
           + L +L    T+  +S   I+TL  +  L E  +W +++K R+I  +H
Sbjct: 259 DTLRVLIQSGTQWSVSLKVIKTLASNKLLPEARLWVYLVKQRLIPTSH 306

The following BLAST results are available for this feature:

BLAST of Tan0017219 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904385.1	1.7e-09	32.89	uncharacterized protein LOC120090747 [Benincasa hispida]	[more]
XP_038898613.1	5.5e-08	27.89	LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida]	[more]
XP_038888747.1	1.9e-05	30.56	vicilin-like seed storage protein At2g18540 [Benincasa hispida]	[more]

BLAST of Tan0017219 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Tan0017219 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017219.1	Tan0017219.1	mRNA