Tan0017007 (gene) Snake gourd v1

Overview


Name	Tan0017007
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	arabinogalactan peptide 23-like
Location	LG09: 57181564 .. 57181755 (-)
RNA-Seq Expression	Tan0017007
Synteny	Tan0017007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGAAGAAGTTTGCCTGTGCCACCCTCTTTGCTGCTGTTGCAGTCAGCACAGTCGTGGCCTCCAATGAGTCTCTCTCTCCTGCCGCCGCACCCGGGCCGAGTAGTGCCGCCTCTGTCGCTCTTCCCGCCCTTGGATCGCTAATTGGTGCCTCACTTGTTTCCTTCCTTACCTACATCTTGAATTGA

mRNA sequence

ATGAAAATGAAGAAGTTTGCCTGTGCCACCCTCTTTGCTGCTGTTGCAGTCAGCACAGTCGTGGCCTCCAATGAGTCTCTCTCTCCTGCCGCCGCACCCGGGCCGAGTAGTGCCGCCTCTGTCGCTCTTCCCGCCCTTGGATCGCTAATTGGTGCCTCACTTGTTTCCTTCCTTACCTACATCTTGAATTGA

Coding sequence (CDS)

ATGAAAATGAAGAAGTTTGCCTGTGCCACCCTCTTTGCTGCTGTTGCAGTCAGCACAGTCGTGGCCTCCAATGAGTCTCTCTCTCCTGCCGCCGCACCCGGGCCGAGTAGTGCCGCCTCTGTCGCTCTTCCCGCCCTTGGATCGCTAATTGGTGCCTCACTTGTTTCCTTCCTTACCTACATCTTGAATTGA

Protein sequence

MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTYILN

Homology

[Close]

BLAST of Tan0017007 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-09
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MKK AC  LFAA +++ V+A+ E  +P  APGP+SAAS ALPALGSL+GASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 ILN 64
           L+
Sbjct: 61 YLH 61

[Close]

BLAST of Tan0017007 vs. NCBI nr
Match: XP_023528634.1 (arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 3.6e-14
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MK  ACA LFAA AV+ VVAS+ESLSPAAAPGPSSAAS ALPALGSLIGASLVSF+ Y
Sbjct: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 ILN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Tan0017007 vs. NCBI nr
Match: XP_038899473.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MKK ACA LFAA AVS+ VA++ESLSPAAAPGPSSAAS ALPALGSL+GASLV+F+ Y
Sbjct: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60

Query: 61 ILN 64
           LN
Sbjct: 61 FLN 63

[Close]

BLAST of Tan0017007 vs. NCBI nr
Match: KAG7018419.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-13
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MK  ACA LFAA AV+ VVAS+ES SPAAAPGPSSAAS ALPALGSLIGASLVSF+ Y
Sbjct: 1  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 ILN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Tan0017007 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-13
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MKK ACA LFAA  V+ VVAS+ESLSPAAAPGPSSAAS ALPALGSL+GASLVSF+ Y
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Tan0017007 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 8.9e-13
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MKK ACA LFAA  V+ VVAS+ESLSPAAAPGPSSAAS ALPALGSL+GASLVSF+ +
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Tan0017007 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MKK ACA LFAA  V+ VVAS+ESLSPAAAPGPSSAAS ALPALGSL+GASLVSF+ Y
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Tan0017007 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.6e-13
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MK  AC  LF A AV+ VVAS+ES SPAAAPGPSSAAS ALPALGSLIGASLVSF+ Y
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 ILN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Tan0017007 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.6e-13
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MKK ACA LFAA  ++ VVAS+ESLSPAAAPGPSSAAS ALPALGSL+GASLVSF+ +
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Tan0017007 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-12
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MKK ACA LFAA  V+ VVAS+ESLSPAAAPGPSSAAS  LPALGSL+GASLVS + Y
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 ILN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Tan0017007 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFL-T 60
          M+MKK ACA LFAA AVS  VA++ES+SPAAAPGPSSAAS ALP L    GAS+VSF+  
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 60

Query: 61 YILN 64
          Y LN
Sbjct: 61 YFLN 60

[Close]

BLAST of Tan0017007 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-10
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MKK AC  LFAA +++ V+A+ E  +P  APGP+SAAS ALPALGSL+GASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 ILN 64
           L+
Sbjct: 61 YLH 61

[Close]

BLAST of Tan0017007 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 5.4e-08
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGP-SSAASVALPALGSLIGASLVSFLT 60
          M+MKK AC  +FAA +++ V+A+      A APGP +S ASVA+PALGSL+GASLVS   
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 YILN 64
          Y LN
Sbjct: 61 YYLN 61

[Close]

BLAST of Tan0017007 vs. TAIR 10
Match: AT3G20865.1 (arabinogalactan protein 40 )

HSP 1 Score: 40.4 bits (93), Expect = 6.2e-04
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 1  MKMKKFACATLFAAVAVSTVVASNESLSPAAAPGPSSAASVALPALGSLIGASLVSFLTY 60
          M+MK    A   +AV VS+V A+    SPA +PG SSA++VA P +GS++ ASL +FL  
Sbjct: 1  MEMKNIFVALFISAVLVSSVSAATME-SPAPSPGASSASTVAFPVVGSIVAASLSAFLAL 60

Query: 61 IL 63
          +L
Sbjct: 61 LL 61

The following BLAST results are available for this feature:

BLAST of Tan0017007 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	2.1e-09	60.32	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Tan0017007 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528634.1	3.6e-14	80.95	arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]	[more]
XP_038899473.1	1.4e-13	77.78	arabinogalactan protein 23-like [Benincasa hispida]	[more]
KAG7018419.1	2.3e-13	79.37	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023004714.1	3.1e-13	77.78	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
KAG7025661.1	8.9e-13	76.19	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0017007 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KX42	1.5e-13	77.78	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4...	[more]
A0A6J1IYE9	9.6e-13	76.19	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4...	[more]
A0A6J1H8I1	9.6e-13	74.60	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE...	[more]
A0A6J1F3F5	2.1e-12	74.60	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE...	[more]
A0A1S3CDX5	3.2e-08	68.75	arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=...	[more]

BLAST of Tan0017007 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	1.5e-10	60.32	arabinogalactan protein 23	[more]
AT2G41905.1	5.4e-08	56.25	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]
AT3G20865.1	6.2e-04	46.77	arabinogalactan protein 40	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..62
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017007.1	Tan0017007.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane