Tan0016881 (gene) Snake gourd v1

Overview


Name	Tan0016881
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	glycine-rich cell wall structural protein 2-like
Location	LG09: 67845945 .. 67846691 (-)
RNA-Seq Expression	Tan0016881
Synteny	Tan0016881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCCATTTCCAACATTTCTTTACCACTTCTTTTCATTTGTTGAGACTACTTTTTTCAAGTAATAATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTTTTCTTGTTTCCACTCTTCTTGTGGTGTCCGAGAGCCGATTAGCCAGGAAAGATTTGGGCCTTGACCTGGGTGGGGTGGGGATTGGGATTGGAGCTGGAATAGGCATTGGACTTGGTGGGAGTGGTTCTGGCTCTGGATCAAGTTCGAGTTCTAGTTCTAGTTCAAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCAGGCTCTTACGCCGGATCTCGAGCAGGTTCTGGCTCGGGTGGTCGTGGAGGTGGAGGTGGAGGTTCGGGGTATGGTGGAGGCTACGGATCAGGTTATGGAGGAGGGCATGGAAAATGAGATGCCAATTGATCTTCATTAACAAGCTGATATTAAAAATGGTTATGGCTGCTATGTAATGAATTAAATATCTAATAATAAAACTTGCTATAATTGATGAAACTCAAAAAAAAATTTGCGACAATGGTTGATGTAGGTTTTCCAATTATGTATTGTATTGTATTTGCATTTCACAAATTAATTAATAGAAGCCTGTATCTCTAATAATTCTATCTATTTTCCAAGTTCCCACGTTTTGCTATTTAAAGATAATAGTAGATATAATCAAGGCCAGTGCTTTCATCATTCAACAAATTTATAACAAGTTTAAATTATT

mRNA sequence

GTGCCATTTCCAACATTTCTTTACCACTTCTTTTCATTTGTTGAGACTACTTTTTTCAAGTAATAATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTTTTCTTGTTTCCACTCTTCTTGTGGTGTCCGAGAGCCGATTAGCCAGGAAAGATTTGGGCCTTGACCTGGGTGGGGTGGGGATTGGGATTGGAGCTGGAATAGGCATTGGACTTGGTGGGAGTGGTTCTGGCTCTGGATCAAGTTCGAGTTCTAGTTCTAGTTCAAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCAGGCTCTTACGCCGGATCTCGAGCAGGTTCTGGCTCGGGTGGTCGTGGAGGTGGAGGTGGAGGTTCGGGGTATGGTGGAGGCTACGGATCAGGTTATGGAGGAGGGCATGGAAAATGAGATGCCAATTGATCTTCATTAACAAGCTGATATTAAAAATGGTTATGGCTGCTATGTAATGAATTAAATATCTAATAATAAAACTTGCTATAATTGATGAAACTCAAAAAAAAATTTGCGACAATGGTTGATGTAGGTTTTCCAATTATGTATTGTATTGTATTTGCATTTCACAAATTAATTAATAGAAGCCTGTATCTCTAATAATTCTATCTATTTTCCAAGTTCCCACGTTTTGCTATTTAAAGATAATAGTAGATATAATCAAGGCCAGTGCTTTCATCATTCAACAAATTTATAACAAGTTTAAATTATT

Coding sequence (CDS)

ATGGGTAGTTTGAAATCCTTGGTTCTCGCTGCTTTTCTTGTTTCCACTCTTCTTGTGGTGTCCGAGAGCCGATTAGCCAGGAAAGATTTGGGCCTTGACCTGGGTGGGGTGGGGATTGGGATTGGAGCTGGAATAGGCATTGGACTTGGTGGGAGTGGTTCTGGCTCTGGATCAAGTTCGAGTTCTAGTTCTAGTTCAAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGATTCTGGATCTGAAGCAGGCTCTTACGCCGGATCTCGAGCAGGTTCTGGCTCGGGTGGTCGTGGAGGTGGAGGTGGAGGTTCGGGGTATGGTGGAGGCTACGGATCAGGTTATGGAGGAGGGCATGGAAAATGA

Protein sequence

MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLGGSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSGYGGGHGK

Homology

[Close]

BLAST of Tan0016881 vs. NCBI nr
Match: XP_023515822.1 (counting factor 45-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-29
Identity = 113/125 (90.40%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG----GSGSGS 60
           MGS KSL+LAA LVS+LLVVSESR+ARKDLGLDLGGVG+GIGAGIGIGLG    GSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSGYG 120
           GSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR  GGGGSGYGGGYGSGYG
Sbjct: 61  GSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--GGGGSGYGGGYGSGYG 120

Query: 121 GGHGK 122
           GGHGK
Sbjct: 121 GGHGK 123

[Close]

BLAST of Tan0016881 vs. NCBI nr
Match: XP_022921886.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])

HSP 1 Score: 138.3 bits (347), Expect = 4.5e-29
Identity = 113/127 (88.98%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG------GSGS 60
           MGS KSL+LAA LVS+LLVVSESR+ARKDLGLDLGGVG+GIGAGIGIGLG      GSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSG 120
           GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR  GGGGSGYGGGYGSG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--GGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 122
           YGGGHGK
Sbjct: 121 YGGGHGK 125

[Close]

BLAST of Tan0016881 vs. NCBI nr
Match: KAG6589747.1 (hypothetical protein SDJN03_15170, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-28
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG--GSGSGSGS 60
           MGS KSL+LAA LVS+LLVVSESR+ARKDLGLDLGGVG+GIGAGIGIGLG  GSGSGSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSGYGGG 120
           SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG R  GGGGSGYGGGYGSGYGGG
Sbjct: 61  SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGDR--GGGGSGYGGGYGSGYGGG 120

Query: 121 HGK 122
           HGK
Sbjct: 121 HGK 121

[Close]

BLAST of Tan0016881 vs. NCBI nr
Match: XP_022988598.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG------GSGS 60
           MG LKSLVLAA LVS+LLVVSESR+ARKDLGLDLGGVG+GIGAGIGIGLG      GSGS
Sbjct: 1   MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSG 120
           GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG  G GGGGSGYGGGYGSG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG--GSGGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 122
           YGGGHGK
Sbjct: 121 YGGGHGK 125

[Close]

BLAST of Tan0016881 vs. NCBI nr
Match: XP_016899784.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo] >KAA0035121.1 glycine-rich cell wall structural protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 109/127 (85.83%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG------GSGS 60
           MGSLKSLVLAA LVS+  VVS+SR+ARKDLGLDLGGVGIG+G GIGIGLG      GSGS
Sbjct: 1   MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSG 120
           GSGS SSSSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS GRGG GGGSGYGGGYGSG
Sbjct: 61  GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 122
           YGGGHGK
Sbjct: 121 YGGGHGK 127

[Close]

BLAST of Tan0016881 vs. ExPASy TrEMBL
Match: A0A6J1E2L6 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430017 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.2e-29
Identity = 113/127 (88.98%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG------GSGS 60
           MGS KSL+LAA LVS+LLVVSESR+ARKDLGLDLGGVG+GIGAGIGIGLG      GSGS
Sbjct: 1   MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSG 120
           GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR  GGGGSGYGGGYGSG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--GGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 122
           YGGGHGK
Sbjct: 121 YGGGHGK 125

[Close]

BLAST of Tan0016881 vs. ExPASy TrEMBL
Match: A0A6J1JMR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111485795 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG------GSGS 60
           MG LKSLVLAA LVS+LLVVSESR+ARKDLGLDLGGVG+GIGAGIGIGLG      GSGS
Sbjct: 1   MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSG 120
           GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG  G GGGGSGYGGGYGSG
Sbjct: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG--GSGGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 122
           YGGGHGK
Sbjct: 121 YGGGHGK 125

[Close]

BLAST of Tan0016881 vs. ExPASy TrEMBL
Match: A0A5A7T0K2 (Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002000 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.3e-28
Identity = 109/127 (85.83%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG------GSGS 60
           MGSLKSLVLAA LVS+  VVS+SR+ARKDLGLDLGGVGIG+G GIGIGLG      GSGS
Sbjct: 1   MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSG 120
           GSGS SSSSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS GRGG GGGSGYGGGYGSG
Sbjct: 61  GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 122
           YGGGHGK
Sbjct: 121 YGGGHGK 127

[Close]

BLAST of Tan0016881 vs. ExPASy TrEMBL
Match: A0A1S4DUX4 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990650 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.3e-28
Identity = 109/127 (85.83%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG------GSGS 60
           MGSLKSLVLAA LVS+  VVS+SR+ARKDLGLDLGGVGIG+G GIGIGLG      GSGS
Sbjct: 1   MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60

Query: 61  GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGYGSG 120
           GSGS SSSSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS GRGG GGGSGYGGGYGSG
Sbjct: 61  GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120

Query: 121 YGGGHGK 122
           YGGGHGK
Sbjct: 121 YGGGHGK 127

[Close]

BLAST of Tan0016881 vs. ExPASy TrEMBL
Match: A0A0A0LWP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.9e-27
Identity = 111/130 (85.38%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVV-SESRLARKDLGLDLGGVGIGIGAGIGIGLG--------G 60
           MGSLKSLVLAA LVS+L VV S+SR+ARKDLGLDLGGVGIG+GAG+GIGLG        G
Sbjct: 1   MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60

Query: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGY 120
           SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR  GG GSGYGGGY
Sbjct: 61  SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--GGEGSGYGGGY 120

Query: 121 GSGYGGGHGK 122
           GSGYGGGHGK
Sbjct: 121 GSGYGGGHGK 128

[Close]

BLAST of Tan0016881 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-16
Identity = 85/129 (65.89%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MGSLKSLVLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLGGSGSGS---- 60
           + +  SL+L   +++T ++VSESR+ARKDLGLDLGG+G GIG GIGIG GGSGSG+    
Sbjct: 4   LNNSSSLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGS 63

Query: 61  -----GSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGGGSGYGGGY 120
                GSSSSSSSSSSSSSSS G G D+GSEAGSYAGS AGSGSGGR G G G G GGG 
Sbjct: 64  GSGGGGSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGG 123

[Close]

BLAST of Tan0016881 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-16
Identity = 67/98 (68.37%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 8   VLAAFLVSTLLVVSESRLARKDLGLDLGGVGIGIGAGIGIGLG---------GSGSGSGS 67
           +L   ++S+L++++ESRLARKDLG+DLGG+GIG+G G+GIGLG         GSGSGSGS
Sbjct: 9   LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68

Query: 68  SSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG 97
            SSSSSSSSSSSSSSGSG  +GS AGS+AGSRAGSGSG
Sbjct: 69  RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

The following BLAST results are available for this feature:

BLAST of Tan0016881 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016881 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515822.1	2.6e-29	90.40	counting factor 45-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022921886.1	4.5e-29	88.98	glycine-rich cell wall structural protein 2-like [Cucurbita moschata]	[more]
KAG6589747.1	1.0e-28	91.06	hypothetical protein SDJN03_15170, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022988598.1	2.2e-28	88.98	glycine-rich cell wall structural protein 2-like [Cucurbita maxima]	[more]
XP_016899784.1	1.1e-27	85.83	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo] >KAA0...	[more]

BLAST of Tan0016881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2L6	2.2e-29	88.98	glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JMR8	1.1e-28	88.98	glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5A7T0K2	5.3e-28	85.83	Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S4DUX4	5.3e-28	85.83	glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LWP0	5.9e-27	85.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1	[more]

BLAST of Tan0016881 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	1.2e-16	65.89	glycine-rich protein	[more]
AT4G30450.1	2.7e-16	68.37	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..121
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 1..120
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016881.1	Tan0016881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane