Tan0016788 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTAGCTGAGAAATTACCAAATTCATGCCTAGAACAAAACACAATCGAATGCAAGGTCAGAACTCTAAAAAAACAATACAATACTATTGCAGAGATGCTTAGTAATGCATGCAGTGGCTTCGGCTGGAACGAAGAGTTCAAGTGTGTTGAGGAAGAGAAGGAGGTGTTCGATGCATGGGTTAAGGTGAGATAATAATATTATAGCATATTGTTATTATCGTTCATTGTACGTATGTGTAATATATCTATTCACATGCAGAGCCATACAAACGCAAAGGGGATGAGGAATAAGCCATTTCCGCAATATGATGACCTCGCATTTGTGTTCGAAAAAGATAGAGCTACAGGAATAGGCGCAGAGACCCCAATGGAAATGGCATCTAGCGCTGTAGAACAAATGGAGGAGGAGATTCGTTTGGGATCACAAGACTTCATGGGAGTGGAACAACGAACAATGGAGAATCTAAGAATTGGTGACATAGGGGAAGATGACTTGCCAGACACTCCTACTAGCATGCGTAATACATCTGGCATGTCTTCTAGATGTATTGGGAGCAAAAGAAAATGA ATGCTAGCTGAGAAATTACCAAATTCATGCCTAGAACAAAACACAATCGAATGCAAGGTCAGAACTCTAAAAAAACAATACAATACTATTGCAGAGATGCTTAGTAATGCATGCAGTGGCTTCGGCTGGAACGAAGAGTTCAAGTGTGTTGAGGAAGAGAAGGAGGTGTTCGATGCATGGGTTAAGAGCCATACAAACGCAAAGGGGATGAGGAATAAGCCATTTCCGCAATATGATGACCTCGCATTTGTGTTCGAAAAAGATAGAGCTACAGGAATAGGCGCAGAGACCCCAATGGAAATGGCATCTAGCGCTGTAGAACAAATGGAGGAGGAGATTCGTTTGGGATCACAAGACTTCATGGGAGTGGAACAACGAACAATGGAGAATCTAAGAATTGGTGACATAGGGGAAGATGACTTGCCAGACACTCCTACTAGCATGCGTAATACATCTGGCATGTCTTCTAGATGTATTGGGAGCAAAAGAAAATGA ATGCTAGCTGAGAAATTACCAAATTCATGCCTAGAACAAAACACAATCGAATGCAAGGTCAGAACTCTAAAAAAACAATACAATACTATTGCAGAGATGCTTAGTAATGCATGCAGTGGCTTCGGCTGGAACGAAGAGTTCAAGTGTGTTGAGGAAGAGAAGGAGGTGTTCGATGCATGGGTTAAGAGCCATACAAACGCAAAGGGGATGAGGAATAAGCCATTTCCGCAATATGATGACCTCGCATTTGTGTTCGAAAAAGATAGAGCTACAGGAATAGGCGCAGAGACCCCAATGGAAATGGCATCTAGCGCTGTAGAACAAATGGAGGAGGAGATTCGTTTGGGATCACAAGACTTCATGGGAGTGGAACAACGAACAATGGAGAATCTAAGAATTGGTGACATAGGGGAAGATGACTTGCCAGACACTCCTACTAGCATGCGTAATACATCTGGCATGTCTTCTAGATGTATTGGGAGCAAAAGAAAATGA MLAEKLPNSCLEQNTIECKVRTLKKQYNTIAEMLSNACSGFGWNEEFKCVEEEKEVFDAWVKSHTNAKGMRNKPFPQYDDLAFVFEKDRATGIGAETPMEMASSAVEQMEEEIRLGSQDFMGVEQRTMENLRIGDIGEDDLPDTPTSMRNTSGMSSRCIGSKRK Homology
BLAST of Tan0016788 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida]) HSP 1 Score: 161.0 bits (406), Expect = 8.7e-36 Identity = 88/164 (53.66%), Postives = 108/164 (65.85%), Query Frame = 0
BLAST of Tan0016788 vs. NCBI nr
Match: XP_038880837.1 (uncharacterized protein LOC120072528 [Benincasa hispida]) HSP 1 Score: 152.1 bits (383), Expect = 4.1e-33 Identity = 74/119 (62.18%), Postives = 89/119 (74.79%), Query Frame = 0
BLAST of Tan0016788 vs. NCBI nr
Match: XP_038889264.1 (uncharacterized protein At2g29880-like [Benincasa hispida]) HSP 1 Score: 150.6 bits (379), Expect = 1.2e-32 Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 0
BLAST of Tan0016788 vs. NCBI nr
Match: XP_038875070.1 (uncharacterized protein LOC120067596 [Benincasa hispida]) HSP 1 Score: 150.6 bits (379), Expect = 1.2e-32 Identity = 77/145 (53.10%), Postives = 100/145 (68.97%), Query Frame = 0
BLAST of Tan0016788 vs. NCBI nr
Match: XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida]) HSP 1 Score: 147.9 bits (372), Expect = 7.6e-32 Identity = 75/128 (58.59%), Postives = 90/128 (70.31%), Query Frame = 0
BLAST of Tan0016788 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 6.1e-27 Identity = 70/168 (41.67%), Postives = 103/168 (61.31%), Query Frame = 0
BLAST of Tan0016788 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 6.1e-27 Identity = 70/168 (41.67%), Postives = 103/168 (61.31%), Query Frame = 0
BLAST of Tan0016788 vs. ExPASy TrEMBL
Match: A0A5D3D9Q6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00360 PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26 Identity = 64/154 (41.56%), Postives = 101/154 (65.58%), Query Frame = 0
BLAST of Tan0016788 vs. ExPASy TrEMBL
Match: A0A5A7TC56 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00560 PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26 Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 0
BLAST of Tan0016788 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 4.0e-26 Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 0
BLAST of Tan0016788 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 1.7e-05 Identity = 20/73 (27.40%), Postives = 42/73 (57.53%), Query Frame = 0
BLAST of Tan0016788 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 47.0 bits (110), Expect = 1.7e-05 Identity = 20/73 (27.40%), Postives = 42/73 (57.53%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|