Tan0016764 (gene) Snake gourd v1

Overview


Name	Tan0016764
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L28
Location	LG10: 5308985 .. 5310015 (+)
RNA-Seq Expression	Tan0016764
Synteny	Tan0016764

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAACCATAGGCTTCCAAAGTGACAAGATAACGATAACTGAGAACTCTGCTCACTAACAATGGCAGCTTCCGTAATCTTAGGCTTGTCGCCGGTAAATACTTCCGGCGTCATAGCAGCGTCGTCAACGAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCCCAATTGAGTGGCATCAAAATCTCCTCCAGTCACTCCCTCATCTCGCCCACTCCCATTTCCGCTCCTCTCAGACCTGCGCTTCAACCCATTGCTCGTAATCTCCACTTCTCAACTCTTTCTTACTTTAACTTTTTCTGTTATTTGATTTTTCGACTCTTTTCGTTCTCTAATTGTATGGCTGAAAATGCAAGTTGATCGAAAGAAGTTTGGTGTTCTGAATTCATTCTTGAGGATTTTGTATTTGTATTAGGTTTCCAATCAGCCATGTTCTAATTCCATTTTGGCTATCTAAAATTGCTATTGGTTTAAATTCCCAGATGCCCAATTCCTTTTGGTGCGCTAATTGATTAATAGCTGCTTCTTTGAATGGTGAGAAATGGAAATTGGGAAGTATCTCAAACTTTGTGTATAATTTTCTGTTTCAGGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAATTTGGTTTCTTTCTCCAATCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAAGTTTGGTGGGAAGCTGGGAAGCGTTATGTCAAACTGCGTTTGTCAACAAAGGCATTGAAGACCATTGAGAAAAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGATATGACATATGGTAATTCATGACTTTTAATTTTACTCTTAGAATTTGAAGAAGATTTGTCTGATTACAAAATCATGTTGTATCCTGCTGTTTTTGGGTTAGTAATGTGTTTATTTTTAATGATCACAATGTTCTTGTGTCTTTGCTTTCCCCCATTTGGCAATGAAGCTGAAATCCATCCCTTGTTCTTTC

mRNA sequence

AACAAAACCATAGGCTTCCAAAGTGACAAGATAACGATAACTGAGAACTCTGCTCACTAACAATGGCAGCTTCCGTAATCTTAGGCTTGTCGCCGGTAAATACTTCCGGCGTCATAGCAGCGTCGTCAACGAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCCCAATTGAGTGGCATCAAAATCTCCTCCAGTCACTCCCTCATCTCGCCCACTCCCATTTCCGCTCCTCTCAGACCTGCGCTTCAACCCATTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAATTTGGTTTCTTTCTCCAATCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAAGTTTGGTGGGAAGCTGGGAAGCGTTATGTCAAACTGCGTTTGTCAACAAAGGCATTGAAGACCATTGAGAAAAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGATATGACATATGGTAATTCATGACTTTTAATTTTACTCTTAGAATTTGAAGAAGATTTGTCTGATTACAAAATCATGTTGTATCCTGCTGTTTTTGGGTTAGTAATGTGTTTATTTTTAATGATCACAATGTTCTTGTGTCTTTGCTTTCCCCCATTTGGCAATGAAGCTGAAATCCATCCCTTGTTCTTTC

Coding sequence (CDS)

ATGGCAGCTTCCGTAATCTTAGGCTTGTCGCCGGTAAATACTTCCGGCGTCATAGCAGCGTCGTCAACGAAACTTCACTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTTCTCACTTCCCAATTGAGTGGCATCAAAATCTCCTCCAGTCACTCCCTCATCTCGCCCACTCCCATTTCCGCTCCTCTCAGACCTGCGCTTCAACCCATTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAATTTGGTTTCTTTCTCCAATCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAAGTTTGGTGGGAAGCTGGGAAGCGTTATGTCAAACTGCGTTTGTCAACAAAGGCATTGAAGACCATTGAGAAAAATGGACTTGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGTAAGGAGTGA

Protein sequence

MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Homology

[Close]

BLAST of Tan0016764 vs. ExPASy Swiss-Prot
Match: P30956 (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.9e-47
Identity = 91/121 (75.21%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 28  RTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPIARRVCPFTGKKANKKNL 87
           ++K +SEL F+TSQLSG+KISS+H + S  P+S P +P+LQP+ARR+CPFTGKK+N+ N 
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQPVARRICPFTGKKSNRANK 90

Query: 88  VSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 147
           VS SNHKTKKLQFVNLQYK++WWEAGKRYVKLRLSTKA+KTIEKNGLDAVAKKAGIDL K
Sbjct: 91  VSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSK 150

Query: 148 E 149
           +
Sbjct: 151 K 151

[Close]

BLAST of Tan0016764 vs. ExPASy Swiss-Prot
Match: P82245 (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 2.5e-45
Identity = 108/150 (72.00%), Postives = 120/150 (80.00%), Query Frame = 0


Query: 1   MAASVILGLSPVNTSGVIAASSTKLHFRTKAN-SELGFLTSQLSGIKISSSHSL-ISPTP 60
           MAAS +L  +P N        S  L  + KA  SELGFLTSQLSGI+IS S    I   P
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSL--KPKATVSELGFLTSQLSGIQISPSPLFPIISKP 60

Query: 61  ISAPLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVK 120
           ISAPL+P+LQP+ARR+CPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKR+VK
Sbjct: 61  ISAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Tan0016764 vs. ExPASy Swiss-Prot
Match: O22795 (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL28 PE=2 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 5.9e-42
Identity = 94/132 (71.21%), Postives = 109/132 (82.58%), Query Frame = 0


Query: 18  IAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPI-ARRVCP 77
           + +S+  +   T  + ELGFLTSQLSG++IS + S +    IS P  P +QPI ARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVI-NRISLPSFPGIQPIVARRICP 72

Query: 78  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDA 137
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKR+VKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 138 VAKKAGIDLRKE 149
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

[Close]

BLAST of Tan0016764 vs. ExPASy Swiss-Prot
Match: Q8DG62 (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 73  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 132
           RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]

BLAST of Tan0016764 vs. ExPASy Swiss-Prot
Match: B8HUV7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmB PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 73  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 132
           RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]

BLAST of Tan0016764 vs. NCBI nr
Match: XP_022979375.1 (50S ribosomal protein L28, chloroplastic [Cucurbita maxima])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 132/148 (89.19%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS 60
           MA S +LG +PV++SGV+AASS+KLHFRTK N ELGFL+SQLSGIKISS+HSLISP+PIS
Sbjct: 1   MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLR 120
           APLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Tan0016764 vs. NCBI nr
Match: XP_022145908.1 (50S ribosomal protein L28, chloroplastic [Momordica charantia])

HSP 1 Score: 255.0 bits (650), Expect = 4.0e-64
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS 60
           MAASV+LGLSP NTSGV+AASST+LHFRTK NSELGFLTSQL GIKISS++S I   PIS
Sbjct: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60

Query: 61  APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLR 120
           APLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Tan0016764 vs. NCBI nr
Match: XP_038885053.1 (50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida])

HSP 1 Score: 254.2 bits (648), Expect = 6.8e-64
Identity = 132/148 (89.19%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS 60
           MAA V+LG +P  +SGV+AASSTKL F TK NSELGFLTSQL+GIKISS+HSLISP+PIS
Sbjct: 1   MAAFVVLGFTPATSSGVMAASSTKLQFTTKPNSELGFLTSQLAGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLR 120
           APLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Tan0016764 vs. NCBI nr
Match: KAG7018806.1 (50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 131/148 (88.51%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS 60
           MA S +LG +PV +SGV+AASS+KLHFR+KAN ELGFL+SQLSGIKISS+HSLIS +PIS
Sbjct: 39  MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 98

Query: 61  APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLR 120
           APLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLR
Sbjct: 99  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 158

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 159 LSTKALKTIEKNGLDAVAKKAGIDLRKE 186

[Close]

BLAST of Tan0016764 vs. NCBI nr
Match: XP_022924246.1 (50S ribosomal protein L28, chloroplastic [Cucurbita moschata] >KAG6582404.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 131/148 (88.51%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS 60
           MA S +LG +PV +SGV+AASS+KLHFR+KAN ELGFL+SQLSGIKISS+HSLIS +PIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 60

Query: 61  APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLR 120
           APLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Tan0016764 vs. ExPASy TrEMBL
Match: A0A6J1IT28 (50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479118 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.1e-65
Identity = 132/148 (89.19%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS 60
           MA S +LG +PV++SGV+AASS+KLHFRTK N ELGFL+SQLSGIKISS+HSLISP+PIS
Sbjct: 1   MAVSAVLGFTPVSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPIS 60

Query: 61  APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLR 120
           APLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Tan0016764 vs. ExPASy TrEMBL
Match: A0A6J1CX73 (50S ribosomal protein L28, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015252 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.9e-64
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS 60
           MAASV+LGLSP NTSGV+AASST+LHFRTK NSELGFLTSQL GIKISS++S I   PIS
Sbjct: 1   MAASVVLGLSPGNTSGVMAASSTRLHFRTKLNSELGFLTSQLGGIKISSNNSPIPSAPIS 60

Query: 61  APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLR 120
           APLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Tan0016764 vs. ExPASy TrEMBL
Match: A0A6J1E916 (50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431774 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.6e-64
Identity = 131/148 (88.51%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MAASVILGLSPVNTSGVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPIS 60
           MA S +LG +PV +SGV+AASS+KLHFR+KAN ELGFL+SQLSGIKISS+HSLIS +PIS
Sbjct: 1   MAVSAVLGFTPVCSSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPIS 60

Query: 61  APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLR 120
           APLRPALQP+ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VKLR
Sbjct: 61  APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of Tan0016764 vs. ExPASy TrEMBL
Match: A0A5A7U1W6 (50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001850 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.0e-62
Identity = 132/150 (88.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MAASVILGLSPVNTS-GVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPI 60
           MAASV+ G +P  TS GV+A SSTKLHFRTK NS+LGFL SQLSGIKISS+HSLISP+PI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  S-APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVK 120
           S APLRP+LQPIARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of Tan0016764 vs. ExPASy TrEMBL
Match: A0A1S3AWK5 (50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.0e-62
Identity = 132/150 (88.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MAASVILGLSPVNTS-GVIAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPI 60
           MAASV+ G +P  TS GV+A SSTKLHFRTK NS+LGFL SQLSGIKISS+HSLISP+PI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  S-APLRPALQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVK 120
           S APLRP+LQPIARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKR+VK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of Tan0016764 vs. TAIR 10
Match: AT2G33450.1 (Ribosomal L28 family )

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-43
Identity = 94/132 (71.21%), Postives = 109/132 (82.58%), Query Frame = 0


Query: 18  IAASSTKLHFRTKANSELGFLTSQLSGIKISSSHSLISPTPISAPLRPALQPI-ARRVCP 77
           + +S+  +   T  + ELGFLTSQLSG++IS + S +    IS P  P +QPI ARR+CP
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVI-NRISLPSFPGIQPIVARRICP 72

Query: 78  FTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDA 137
           FTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKR+VKLRLSTKALKTIEKNGLDA
Sbjct: 73  FTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDA 132

Query: 138 VAKKAGIDLRKE 149
           VAKKAGIDLRK+
Sbjct: 133 VAKKAGIDLRKK 143

The following BLAST results are available for this feature:

BLAST of Tan0016764 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30956	7.9e-47	75.21	50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P...	[more]
P82245	2.5e-45	72.00	50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P...	[more]
O22795	5.9e-42	71.21	50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
Q8DG62	2.8e-20	64.00	50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972...	[more]
B8HUV7	4.8e-20	64.00	50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of Tan0016764 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979375.1	1.1e-64	89.19	50S ribosomal protein L28, chloroplastic [Cucurbita maxima]	[more]
XP_022145908.1	4.0e-64	90.54	50S ribosomal protein L28, chloroplastic [Momordica charantia]	[more]
XP_038885053.1	6.8e-64	89.19	50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S...	[more]
KAG7018806.1	2.0e-63	88.51	50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022924246.1	2.0e-63	88.51	50S ribosomal protein L28, chloroplastic [Cucurbita moschata] >KAG6582404.1 50S ...	[more]

BLAST of Tan0016764 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IT28	5.1e-65	89.19	50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1CX73	1.9e-64	90.54	50S ribosomal protein L28, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1E916	9.6e-64	88.51	50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7U1W6	4.0e-62	88.00	50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AWK5	4.0e-62	88.00	50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567...	[more]

BLAST of Tan0016764 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33450.1	4.2e-43	71.21	Ribosomal L28 family	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	TIGRFAM	TIGR00009	TIGR00009	coord: 73..128 e-value: 9.0E-16 score: 56.1
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 70..146 score: 14.028874
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 73..131 e-value: 2.6E-18 score: 65.9
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 23..148
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	2.30.170.40	Ribosomal protein L28/L24	coord: 72..148 e-value: 4.6E-28 score: 99.0
None	No IPR available	PANTHER	PTHR13528:SF6	50S RIBOSOMAL PROTEIN L28, CHLOROPLASTIC	coord: 23..148
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 73..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016764.1	Tan0016764.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome