Tan0016661 (gene) Snake gourd v1

Overview


Name	Tan0016661
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Flap endonuclease 1
Location	LG09: 1281830 .. 1283248 (-)
RNA-Seq Expression	Tan0016661
Synteny	Tan0016661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATTAAGGTATCTGCCTTCTCTCTCTACATCATTCTCCGCTCCCTCGCTCTCCCGCTCTTGTTTTCCACTTTCCCATTTTGACGTCCCTGGTTTTCTTAGGGTTTAACCAAGCTTTTAGCTGACAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAAAATCGCAATCGATGCAAGCATGAGTATTTATCAATTTCTTGTCAGTACCTTTTTCCCCAGTTTTTCTTTTTTTTTTTTTCCAATTAAAAACTACTCTGGGTATCTCATATCTCTCTGTGAACTAATGCAGATTGTCGTGGGAAGAAGTGGGACTGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGGTTGGCCTTTAGAAAAATTTCTACATTCTGTTTGAATTCAAAAATTTCTACATGCTTTTGCTTGATGTGTTCGATTTTTTCATGTTAATTTCATGATTTCTGTAATGTTAAACTGTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTGTAATTTCTTTCTGTGTCCTGGCATTTCGTTTTCGAGTTTTGTCATGAAAATTTTGTCTGATATGGTTTTCCTTTTATGTGAACAAATGTACTCAGCTATGTCTTTGACGGAAAGCCTCCCGATTTGAAAAAACAAGAACTTGCAAAACGGTAACTATGCTATCTCATTGTATGTCCTTTATAACGTTCAAAGGGGCAGCCATGATCATCATGCCTTCCATGTAAATTATGTATGCAGTTTCTCAAAGAGAGCAGATGCTACTGAAGACCTGGCAGATGCAATCGAGGTAGTTTCATTCCTTTACTTTTGTGTTTTGTTCCTTGTTAAGCACATAAGACAGTGAATTATTTCTAGCAACTGCTCCTTTCGTCATTCTAGGTTGGCAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTGAAGGTTAGTTATATGCTTTAACATTTTTCCTCAAGTAACGTACACATTACATTGTAAATCAATTTATATACTCTCACAAATGATCAGTAAAGGGATTGGAGCAGCACACAAATATTCTGGAAGTTGTATAATATTGAAATAAATCGTATACACATCATATAATTTGTGGTTAAACTTGCAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATCGAGGTGACTGTACACAATACTACATATGTTCGTTCAAGTAATCTATTGCTTCAGTTGTAAGTTGTAACATGTTTGAGTACATTGCAATTATTTTTGGATGTTGCAGGCTCCCTCGGAAGCTGAGGCACAATGTGCCGTGCTTTGCAAGTTAGGAAAGGCAAGTACCCCTCTCCTGCATGATAATGCTTCTTTTGTTTCTTGA

mRNA sequence

ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAAAATCGCAATCGATGCAAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGACGGAAAGCCTCCCGATTTGAAAAAACAAGAACTTGCAAAACGTTTCTCAAAGAGAGCAGATGCTACTGAAGACCTGGCAGATGCAATCGAGGTTGGCAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTGAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCCGTGCTTTGCAAGTTAGGAAAGGCAAGTACCCCTCTCCTGCATGATAATGCTTCTTTTGTTTCTTGA

Coding sequence (CDS)

ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAAAATCGCAATCGATGCAAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGACGGAAAGCCTCCCGATTTGAAAAAACAAGAACTTGCAAAACGTTTCTCAAAGAGAGCAGATGCTACTGAAGACCTGGCAGATGCAATCGAGGTTGGCAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTGAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCCGTGCTTTGCAAGTTAGGAAAGGCAAGTACCCCTCTCCTGCATGATAATGCTTCTTTTGTTTCTTGA

Protein sequence

MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGKASTPLLHDNASFVS

Homology

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BLAST of Tan0016661 vs. ExPASy Swiss-Prot
Match: C6TEX6 (Flap endonuclease 1 OS=Glycine max OX=3847 GN=FEN1 PE=2 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.2e-86
Identity = 159/172 (92.44%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKE KFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMF+RTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRA+ATEDL++A+E  N
Sbjct: 61  VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPV+EAPSEAEAQCA LCK GK
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGK 172

[Close]

BLAST of Tan0016661 vs. ExPASy Swiss-Prot
Match: O65251 (Flap endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=FEN1 PE=3 SV=2)

HSP 1 Score: 312.4 bits (799), Expect = 3.5e-84
Identity = 156/172 (90.70%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPP+LK+QELAKR+SKRADAT DL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+EA SEAEAQCA LCK GK
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGK 172

[Close]

BLAST of Tan0016661 vs. ExPASy Swiss-Prot
Match: C5YUK3 (Flap endonuclease 1-A OS=Sorghum bicolor OX=4558 GN=FEN1-A PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.0e-80
Identity = 149/172 (86.63%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGRKIAIDASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPD+KK+ELAKRFSKR DAT DL +A+E G+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKEELAKRFSKREDATNDLKEAVEAGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           K+ +EK SKRTVKVT QHNDDCKRLLRLMGVPV+EAPSEAEA+CA LCK  K
Sbjct: 121 KDAVEKLSKRTVKVTAQHNDDCKRLLRLMGVPVVEAPSEAEAECAALCKNDK 172

[Close]

BLAST of Tan0016661 vs. ExPASy Swiss-Prot
Match: B4FHY0 (Flap endonuclease 1 OS=Zea mays OX=4577 GN=FEN1 PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.3e-80
Identity = 147/168 (87.50%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPD+KKQELAKR+SKR DAT+DL +A+EVG+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLTEAVEVGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLC 169
           K+ IEK SKRTVKVT+QHN+DCKRLLRLMGVPV+EAPSEAEA+CA LC
Sbjct: 121 KDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALC 168

[Close]

BLAST of Tan0016661 vs. ExPASy Swiss-Prot
Match: B8AW67 (Flap endonuclease 1-A OS=Oryza sativa subsp. indica OX=39946 GN=FEN1a PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.4e-79
Identity = 145/168 (86.31%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGR+IA+DASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKR DAT++L +A+E G+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLC 169
           K+ IEKFSKRTVKVTKQHN++CKRLLRLMGVPV+EAP EAEA+CA LC
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALC 168

[Close]

BLAST of Tan0016661 vs. NCBI nr
Match: KAA0050979.1 (flap endonuclease 1 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 341.7 bits (875), Expect = 4.1e-90
Identity = 178/186 (95.70%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-APSEAEAQCAVLCKLGKASTPLLH 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE APSEAEAQCA LCKLGKAS  LL 
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEQAPSEAEAQCAALCKLGKASA-LLL 180

Query: 181 DNASFV 186
           D+ASFV
Sbjct: 181 DHASFV 185

[Close]

BLAST of Tan0016661 vs. NCBI nr
Match: TYK10325.1 (flap endonuclease 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 335.9 bits (860), Expect = 2.2e-88
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCA LCKLGK
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 172

[Close]

BLAST of Tan0016661 vs. NCBI nr
Match: XP_008450492.1 (PREDICTED: flap endonuclease 1 isoform X2 [Cucumis melo])

HSP 1 Score: 335.9 bits (860), Expect = 2.2e-88
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCA LCKLGK
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 172

[Close]

BLAST of Tan0016661 vs. NCBI nr
Match: KGN66474.2 (hypothetical protein Csa_007122 [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 5.0e-88
Identity = 168/172 (97.67%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           K+DIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCA LCKLGK
Sbjct: 121 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 172

[Close]

BLAST of Tan0016661 vs. NCBI nr
Match: XP_031740577.1 (flap endonuclease 1 [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 5.0e-88
Identity = 168/172 (97.67%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           K+DIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCA LCKLGK
Sbjct: 121 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 172

[Close]

BLAST of Tan0016661 vs. ExPASy TrEMBL
Match: A0A5A7UBR8 (Flap endonuclease 1 OS=Cucumis melo var. makuwa OX=1194695 GN=FEN1 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.0e-90
Identity = 178/186 (95.70%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE-APSEAEAQCAVLCKLGKASTPLLH 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIE APSEAEAQCA LCKLGKAS  LL 
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEQAPSEAEAQCAALCKLGKASA-LLL 180

Query: 181 DNASFV 186
           D+ASFV
Sbjct: 181 DHASFV 185

[Close]

BLAST of Tan0016661 vs. ExPASy TrEMBL
Match: A0A5D3CFP9 (Flap endonuclease 1 OS=Cucumis melo var. makuwa OX=1194695 GN=FEN1 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCA LCKLGK
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 172

[Close]

BLAST of Tan0016661 vs. ExPASy TrEMBL
Match: A0A1S3BQ01 (Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRADATEDLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCA LCKLGK
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 172

[Close]

BLAST of Tan0016661 vs. ExPASy TrEMBL
Match: A0A0A0LWA2 (Flap endonuclease 1 OS=Cucumis sativus OX=3659 GN=FEN1 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.4e-88
Identity = 168/172 (97.67%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFE+YFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 41  MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 100

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKR+SKRADATEDLADAIEVGN
Sbjct: 101 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGN 160

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           K+DIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCA LCKLGK
Sbjct: 161 KDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 212

[Close]

BLAST of Tan0016661 vs. ExPASy TrEMBL
Match: A0A6J1I0P7 (Flap endonuclease 1 OS=Cucurbita maxima OX=3661 GN=LOC111468704 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.2e-88
Identity = 168/172 (97.67%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKR+SKRADAT DLADAIEVGN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCA LCKLGK
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 172

[Close]

BLAST of Tan0016661 vs. TAIR 10
Match: AT5G26680.1 (5'-3' exonuclease family protein )

HSP 1 Score: 312.4 bits (799), Expect = 2.5e-85
Identity = 156/172 (90.70%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPP+LK+QELAKR+SKRADAT DL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+EA SEAEAQCA LCK GK
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGK 172

[Close]

BLAST of Tan0016661 vs. TAIR 10
Match: AT5G26680.2 (5'-3' exonuclease family protein )

HSP 1 Score: 312.4 bits (799), Expect = 2.5e-85
Identity = 156/172 (90.70%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPP+LK+QELAKR+SKRADAT DL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGK 173
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+EA SEAEAQCA LCK GK
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGK 172

[Close]

BLAST of Tan0016661 vs. TAIR 10
Match: AT3G28030.1 (5'-3' exonuclease family protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-10
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MG++GL +LL   AP G +    E+   +++AIDAS+ + QF+  +     +M+ N    
Sbjct: 1   MGVQGLWELL---APVG-RRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQN---- 60

Query: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDL---ADAIE 120
             +HL G F R  +LL    KP++VFDG  P LK++ +  R  +R +A   +   A+ + 
Sbjct: 61  --AHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLL 120

Query: 121 VGNKEDIE-KFSKRTVKVTKQHNDDCKRLLRLMGVPVIE 156
           +   +DI  K   + +K  +   DD  R+ + +    +E
Sbjct: 121 LNRLKDIRLKEQAKDIKNQRLKQDDSDRVKKRVSSDSVE 149

[Close]

BLAST of Tan0016661 vs. TAIR 10
Match: AT1G01880.1 (5'-3' exonuclease family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-09
Identity = 49/168 (29.17%), Postives = 75/168 (44.64%), Query Frame = 0


Query: 19  KEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLL-E 78
           ++Q F+    +++A+D S  I Q    V          +   +  HL+  F RTI L  +
Sbjct: 16  QQQGFDFLRNKRVAVDLSFWIVQHETAV----------KGFVLKPHLRLTFFRTINLFSK 75

Query: 79  AGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQ 138
            G  PV+V DG P  LK Q    RF + +         I+ G   +  K     V+    
Sbjct: 76  FGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWVR---- 135

Query: 139 HNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGKASTPLLHDNASFV 186
              +C  LL L+G+PV++A  EAEA CA L   G     +  D+ +F+
Sbjct: 136 ---ECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFL 166

[Close]

BLAST of Tan0016661 vs. TAIR 10
Match: AT1G01880.2 (5'-3' exonuclease family protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-08
Identity = 49/168 (29.17%), Postives = 76/168 (45.24%), Query Frame = 0


Query: 19  KEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLL-E 78
           ++Q F+    +++A+D S  I Q    V          +   +  HL+  F RTI L  +
Sbjct: 16  QQQGFDFLRNKRVAVDLSFWIVQHETAV----------KGFVLKPHLRLTFFRTINLFSK 75

Query: 79  AGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQ 138
            G  PV+V DG P  LK Q    RF + +         I+ G   +  K     V+    
Sbjct: 76  FGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWVR---- 135

Query: 139 HNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGKASTPLLHDNASFV 186
              +C+ LL L+G+PV++A  EAEA CA L   G     +  D+ +F+
Sbjct: 136 ---ECE-LLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFL 165

The following BLAST results are available for this feature:

BLAST of Tan0016661 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C6TEX6	2.2e-86	92.44	Flap endonuclease 1 OS=Glycine max OX=3847 GN=FEN1 PE=2 SV=1	[more]
O65251	3.5e-84	90.70	Flap endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=FEN1 PE=3 SV=2	[more]
C5YUK3	1.0e-80	86.63	Flap endonuclease 1-A OS=Sorghum bicolor OX=4558 GN=FEN1-A PE=3 SV=1	[more]
B4FHY0	2.3e-80	87.50	Flap endonuclease 1 OS=Zea mays OX=4577 GN=FEN1 PE=2 SV=1	[more]
B8AW67	3.4e-79	86.31	Flap endonuclease 1-A OS=Oryza sativa subsp. indica OX=39946 GN=FEN1a PE=3 SV=1	[more]

BLAST of Tan0016661 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050979.1	4.1e-90	95.70	flap endonuclease 1 isoform X3 [Cucumis melo var. makuwa]	[more]
TYK10325.1	2.2e-88	98.26	flap endonuclease 1 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008450492.1	2.2e-88	98.26	PREDICTED: flap endonuclease 1 isoform X2 [Cucumis melo]	[more]
KGN66474.2	5.0e-88	97.67	hypothetical protein Csa_007122 [Cucumis sativus]	[more]
XP_031740577.1	5.0e-88	97.67	flap endonuclease 1 [Cucumis sativus]	[more]

BLAST of Tan0016661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBR8	2.0e-90	95.70	Flap endonuclease 1 OS=Cucumis melo var. makuwa OX=1194695 GN=FEN1 PE=3 SV=1	[more]
A0A5D3CFP9	1.1e-88	98.26	Flap endonuclease 1 OS=Cucumis melo var. makuwa OX=1194695 GN=FEN1 PE=3 SV=1	[more]
A0A1S3BQ01	1.1e-88	98.26	Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1	[more]
A0A0A0LWA2	2.4e-88	97.67	Flap endonuclease 1 OS=Cucumis sativus OX=3659 GN=FEN1 PE=3 SV=1	[more]
A0A6J1I0P7	3.2e-88	97.67	Flap endonuclease 1 OS=Cucurbita maxima OX=3661 GN=LOC111468704 PE=3 SV=1	[more]

BLAST of Tan0016661 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26680.1	2.5e-85	90.70	5'-3' exonuclease family protein	[more]
AT5G26680.2	2.5e-85	90.70	5'-3' exonuclease family protein	[more]
AT3G28030.1	7.6e-10	29.56	5'-3' exonuclease family protein	[more]
AT1G01880.1	1.7e-09	29.17	5'-3' exonuclease family protein	[more]
AT1G01880.2	1.9e-08	29.17	5'-3' exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006084	XPG/Rad2 endonuclease	PRINTS	PR00853	XPGRADSUPER	coord: 82..101 score: 57.5 coord: 28..42 score: 49.38 coord: 146..163 score: 61.28
IPR006084	XPG/Rad2 endonuclease	PANTHER	PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	coord: 1..175
IPR006085	XPG, N-terminal	SMART	SM00485	xpgn3	coord: 1..108 e-value: 6.0E-55 score: 198.5
IPR006085	XPG, N-terminal	PFAM	PF00752	XPG_N	coord: 1..107 e-value: 6.1E-31 score: 106.9
None	No IPR available	GENE3D	3.40.50.1010		coord: 2..185 e-value: 5.3E-63 score: 214.6
None	No IPR available	PANTHER	PTHR11081:SF9	FLAP ENDONUCLEASE 1	coord: 1..175
None	No IPR available	CDD	cd09867	PIN_FEN1	coord: 4..173 e-value: 1.37199E-100 score: 288.529
IPR006086	XPG-I domain	PFAM	PF00867	XPG_I	coord: 147..175 e-value: 1.6E-8 score: 34.8
IPR019974	XPG conserved site	PROSITE	PS00842	XPG_2	coord: 150..164
IPR019974	XPG conserved site	PROSITE	PS00841	XPG_1	coord: 80..94
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 2..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016661.1	Tan0016661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0043137	DNA replication, removal of RNA primer
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0008409	5'-3' exonuclease activity
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0004518	nuclease activity