Tan0016638 (gene) Snake gourd v1

Overview
NameTan0016638
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy1-copia retrotransposon protein
LocationLG04: 19383740 .. 19384045 (-)
RNA-Seq ExpressionTan0016638
SyntenyTan0016638
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAACCACTCGATGGAGCAAATTACCGTCATTGGTCCCAGAAGCTGTTGATTTTCTTCGAGCAACTGGAGGTGGACTATGTTCTGACCATAGAATATTCAAATCGGGACCGATCCGACCTTGCTGATCCGGCCGCATCTACTGACACACAAACTGTCCCTGCTCTTCCTGATCTTGAAAAATTTGAGAAAGATAACAAGACAGTAAGGGGTCATCTGCTCAACCATATGACAAATTCTTTGTTTGATCTATTCGTCATTTAG

mRNA sequence

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAACCACTCGATGGAGCAAATTACCGTCATTGGTCCCAGAAGCTGTTGATTTTCTTCGAGCAACTGGAGGTGGACTATGTTCTGACCATAGAATATTCAAATCGGGACCGATCCGACCTTGCTGATCCGGCCGCATCTACTGACACACAAACTGTCCCTGCTCTTCCTGATCTTGAAAAATTTGAGAAAGATAACAAGACAGTAAGGGGTCATCTGCTCAACCATATGACAAATTCTTTGTTTGATCTATTCGTCATTTAG

Coding sequence (CDS)

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAACCACTCGATGGAGCAAATTACCGTCATTGGTCCCAGAAGCTGTTGATTTTCTTCGAGCAACTGGAGGTGGACTATGTTCTGACCATAGAATATTCAAATCGGGACCGATCCGACCTTGCTGATCCGGCCGCATCTACTGACACACAAACTGTCCCTGCTCTTCCTGATCTTGAAAAATTTGAGAAAGATAACAAGACAGTAAGGGGTCATCTGCTCAACCATATGACAAATTCTTTGTTTGATCTATTCGTCATTTAG

Protein sequence

MSIKSGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRDRSDLADPAASTDTQTVPALPDLEKFEKDNKTVRGHLLNHMTNSLFDLFVI
Homology
[Close]
BLAST of Tan0016638 vs. NCBI nr
Match: KAA0041580.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 70/115 (60.87%), Postives = 82/115 (71.30%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYRHWSQKLLIFFEQLEVDYVLT +  + D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRHWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTY 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           ++P +ST + T  A+ D          EK+ KDNKTVRGHLLNHM+  +FDLFV+
Sbjct: 61  SNPESSTGSPTTVAVADQVKKDQVIDPEKYAKDNKTVRGHLLNHMSEPMFDLFVV 115

[Close]
BLAST of Tan0016638 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 8.6e-26
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIFFEQLEVDYVLT +    D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           +DP +ST   T  A+ D          EK+ KDNKTVRGHLLNHM++ +FDLFV+
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVV 115

[Close]
BLAST of Tan0016638 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 8.6e-26
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIFFEQLEVDYVLT +    D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           +DP +ST   T  A+ D          EK+ KDNKTVRGHLLNHM++ +FDLFV+
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVV 115

[Close]
BLAST of Tan0016638 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 8.6e-26
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIFFEQLEVDYVLT +    D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           +DP +ST   T  A+ D          EK+ KDNKTVRGHLLNHM++ +FDLFV+
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVV 115

[Close]
BLAST of Tan0016638 vs. NCBI nr
Match: KAA0055836.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 8.6e-26
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIFFEQLEVDYVLT +    D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           +DP +ST   T  A+ D          EK+ KDNKTVRGHLLNHM++ +FDLFV+
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVV 115

[Close]
BLAST of Tan0016638 vs. ExPASy TrEMBL
Match: A0A5D3D7X7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00700 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.4e-27
Identity = 70/115 (60.87%), Postives = 82/115 (71.30%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYRHWSQKLLIFFEQLEVDYVLT +  + D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRHWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTY 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           ++P +ST + T  A+ D          EK+ KDNKTVRGHLLNHM+  +FDLFV+
Sbjct: 61  SNPESSTGSPTTVAVADQVKKDQVIDPEKYAKDNKTVRGHLLNHMSEPMFDLFVV 115

[Close]
BLAST of Tan0016638 vs. ExPASy TrEMBL
Match: A0A5A7SKK3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004780 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.2e-26
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIFFEQLEVDYVLT +    D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           +DP +ST   T  A+ D          EK+ KDNKTVRGHLLNHM++ +FDLFV+
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVV 115

[Close]
BLAST of Tan0016638 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.2e-26
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIFFEQLEVDYVLT +    D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           +DP +ST   T  A+ D          EK+ KDNKTVRGHLLNHM++ +FDLFV+
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVV 115

[Close]
BLAST of Tan0016638 vs. ExPASy TrEMBL
Match: A0A5A7V1I1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004050 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.2e-26
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIFFEQLEVDYVLT +    D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           +DP +ST   T  A+ D          EK+ KDNKTVRGHLLNHM++ +FDLFV+
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVV 115

[Close]
BLAST of Tan0016638 vs. ExPASy TrEMBL
Match: A0A5A7UNH1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold104G00100 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.2e-26
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 0 

Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRHWSQKLLIFFEQLEVDYVLTIEYSNRD----RSDL 60
           MSIK S K+LPDLSKLEPLDG NYR WSQKLLIFFEQLEVDYVLT +    D     S  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  ADPAASTDTQTVPALPDL---------EKFEKDNKTVRGHLLNHMTNSLFDLFVI 102
           +DP +ST   T  A+ D          EK+ KDNKTVRGHLLNHM++ +FDLFV+
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVV 115

The following BLAST results are available for this feature:
BLAST of Tan0016638 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0016638 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041580.11.3e-2660.87ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-cop... [more]
TYK04394.18.6e-2660.87ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0056761.18.6e-2660.87ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK06518.18.6e-2660.87ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0055836.18.6e-2660.87ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Tan0016638 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D7X76.4e-2760.87Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SKK34.2e-2660.87Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3C5T24.2e-2660.87Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7V1I14.2e-2660.87Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7UNH14.2e-2660.87Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Tan0016638 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016638.1Tan0016638.1mRNA